Wall clock time and date at job start Thu Apr 9 2020 13:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47183 * 2 1 4 4 C 1.34957 * 126.03329 * 124.97448 * 3 2 1 5 5 C 1.35317 * 107.74055 * 179.97438 * 4 3 2 6 6 C 1.50701 * 126.03591 * 180.02562 * 5 4 3 7 7 N 1.46896 * 109.47493 * 259.95009 * 6 5 4 8 8 C 1.46852 * 110.99969 * 66.04548 * 7 6 5 9 9 C 1.53030 * 109.52543 * 185.83899 * 8 7 6 10 10 C 1.53119 * 109.27958 * 300.82384 * 9 8 7 11 11 C 1.53122 * 109.16092 * 57.65305 * 10 9 8 12 12 H 1.08995 * 109.50004 * 62.29186 * 11 10 9 13 13 C 1.50704 * 109.50026 * 182.36804 * 11 10 9 14 14 H 1.07997 * 120.00072 * 120.00453 * 13 11 10 15 15 C 1.37877 * 119.99876 * 299.99656 * 13 11 10 16 16 N 1.31515 * 120.00267 * 0.02562 * 15 13 11 17 17 Si 1.86795 * 120.00008 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47319 * 90.00073 * 17 15 13 19 19 H 1.48498 * 109.47411 * 209.99899 * 17 15 13 20 20 H 1.48503 * 109.47062 * 329.99883 * 17 15 13 21 21 C 1.46849 * 111.00286 * 190.25660 * 7 6 5 22 22 C 1.39868 * 107.92640 * 0.02562 * 5 4 3 23 23 C 1.50696 * 125.90209 * 180.26118 * 22 5 4 24 24 N 1.30844 * 108.19764 * 359.97438 * 22 5 4 25 25 H 1.09001 * 109.47142 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46871 * 299.99950 * 1 2 3 27 27 H 1.08999 * 109.47317 * 59.99347 * 1 2 3 28 28 H 1.09001 * 109.46871 * 240.00049 * 2 1 3 29 29 H 1.08999 * 109.47317 * 120.00653 * 2 1 3 30 30 H 1.07995 * 126.12756 * 0.02562 * 4 3 2 31 31 H 1.09004 * 109.46985 * 19.95523 * 6 5 4 32 32 H 1.09001 * 109.46900 * 139.94874 * 6 5 4 33 33 H 1.09001 * 109.46481 * 305.86173 * 8 7 6 34 34 H 1.09000 * 109.45893 * 65.82723 * 8 7 6 35 35 H 1.09004 * 109.50258 * 60.76178 * 9 8 7 36 36 H 1.08999 * 109.50425 * 180.87790 * 9 8 7 37 37 H 1.09007 * 109.52375 * 177.56161 * 10 9 8 38 38 H 1.08998 * 109.52428 * 297.68378 * 10 9 8 39 39 H 0.96995 * 120.00428 * 179.97438 * 16 15 13 40 40 H 1.09000 * 109.46216 * 294.17606 * 21 7 6 41 41 H 1.08992 * 109.45937 * 54.14556 * 21 7 6 42 42 H 1.09005 * 109.46832 * 269.71640 * 23 22 5 43 43 H 1.09004 * 109.46837 * 29.71446 * 23 22 5 44 44 H 1.08992 * 109.47200 * 149.71544 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8728 1.9211 0.8943 5 6 3.0720 3.2134 0.5459 6 6 3.9556 4.1995 1.2656 7 7 3.1305 5.0634 2.1204 8 6 2.5110 4.2925 3.2059 9 6 1.5480 5.1903 3.9859 10 6 2.3195 6.3830 4.5576 11 6 2.9948 7.1409 3.4112 12 1 2.2341 7.5311 2.7351 13 6 3.8040 8.2825 3.9707 14 1 4.8690 8.3256 3.7968 15 6 3.1847 9.2720 4.7043 16 7 1.8878 9.2194 4.9163 17 14 4.1876 10.6874 5.3972 18 1 4.2319 11.7938 4.4077 19 1 3.5593 11.1713 6.6527 20 1 5.5688 10.2225 5.6821 21 6 3.9159 6.1865 2.6479 22 6 2.3129 3.4723 -0.6000 23 6 2.2408 4.7865 -1.3339 24 7 1.6811 2.3745 -0.9282 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.3184 1.4127 1.7364 31 1 4.6757 3.6603 1.8811 32 1 4.4869 4.8109 0.5362 33 1 1.9621 3.4498 2.7856 34 1 3.2863 3.9224 3.8768 35 1 0.7645 5.5498 3.3187 36 1 1.1001 4.6220 4.8011 37 1 1.6296 7.0478 5.0774 38 1 3.0769 6.0261 5.2555 39 1 1.4521 9.9153 5.4328 40 1 4.6846 5.8075 3.3214 41 1 4.3873 6.7195 1.8223 42 1 1.4281 5.3868 -0.9250 43 1 3.1831 5.3213 -1.2148 44 1 2.0591 4.6019 -2.3926 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895313510.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:55:45 Heat of formation + Delta-G solvation = 46.646153 kcal Electronic energy + Delta-G solvation = -22045.478920 eV Core-core repulsion = 18998.009153 eV Total energy + Delta-G solvation = -3047.469767 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.18042 -39.61336 -36.09498 -35.26642 -33.61223 -32.27053 -31.68099 -30.81096 -28.56335 -26.86454 -26.65175 -23.88962 -23.35460 -22.91131 -21.53005 -20.33084 -20.03619 -18.37574 -17.59172 -16.80574 -16.49482 -16.05719 -15.65848 -15.39741 -15.07250 -14.86349 -14.75321 -14.40190 -14.08695 -13.96392 -13.75510 -13.52680 -13.26167 -12.99736 -12.93926 -12.83025 -12.75680 -12.64476 -12.50854 -12.24125 -12.13994 -11.80227 -11.66564 -11.41755 -11.24990 -10.82677 -10.61071 -10.34152 -10.05704 -9.26801 -8.93323 -8.03822 -6.17918 1.00345 1.43818 1.44207 1.54318 1.70456 1.82514 2.46318 3.23041 3.34515 3.61543 3.96329 4.09662 4.16100 4.19739 4.28784 4.32873 4.38909 4.43602 4.47932 4.66975 4.68207 4.75929 4.81369 4.83653 4.85479 4.92671 4.95444 5.04509 5.13249 5.13883 5.17289 5.23756 5.26568 5.31050 5.43666 5.57598 5.67588 5.83137 6.03509 6.19020 6.24246 6.29023 6.48855 6.54246 6.86958 6.95856 7.49911 9.00655 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.032383 B = 0.003829 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.446463 B = 7310.044574 C = 7602.698329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.124 3.876 3 N -0.376 5.376 4 C 0.063 3.937 5 C -0.238 4.238 6 C 0.138 3.862 7 N -0.542 5.542 8 C 0.076 3.924 9 C -0.110 4.110 10 C -0.102 4.102 11 C 0.053 3.947 12 H -0.006 1.006 13 C -0.533 4.533 14 H 0.053 0.947 15 C 0.013 3.987 16 N -0.917 5.917 17 Si 0.954 3.046 18 H -0.277 1.277 19 H -0.285 1.285 20 H -0.267 1.267 21 C 0.083 3.917 22 C 0.078 3.922 23 C -0.065 4.065 24 N -0.332 5.332 25 H 0.100 0.900 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.092 0.908 29 H 0.125 0.875 30 H 0.199 0.801 31 H 0.043 0.957 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.028 0.972 35 H 0.041 0.959 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.024 0.976 39 H 0.259 0.741 40 H 0.017 0.983 41 H 0.059 0.941 42 H 0.067 0.933 43 H 0.080 0.920 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.245 -19.230 -8.092 20.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.005 3.995 3 N -0.158 5.158 4 C -0.084 4.084 5 C -0.250 4.250 6 C 0.010 3.990 7 N -0.267 5.267 8 C -0.051 4.051 9 C -0.148 4.148 10 C -0.140 4.140 11 C 0.035 3.965 12 H 0.012 0.988 13 C -0.572 4.572 14 H 0.071 0.929 15 C -0.186 4.186 16 N -0.556 5.556 17 Si 0.780 3.220 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.192 1.192 21 C -0.044 4.044 22 C -0.087 4.087 23 C -0.124 4.124 24 N -0.155 5.155 25 H 0.119 0.881 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.110 0.890 29 H 0.143 0.857 30 H 0.216 0.784 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.046 0.954 35 H 0.060 0.940 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.043 0.957 39 H 0.068 0.932 40 H 0.035 0.965 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.124 -19.674 -9.121 21.686 hybrid contribution 1.299 1.208 1.599 2.389 sum 1.175 -18.466 -7.522 19.974 Atomic orbital electron populations 1.22009 0.94018 1.03841 1.01897 1.22006 0.95970 0.76016 1.05509 1.48837 1.35442 1.10736 1.20774 1.22744 0.95056 0.94334 0.96279 1.19905 1.09184 0.95085 1.00839 1.20207 0.91970 0.92228 0.94598 1.61888 1.33866 1.10071 1.20841 1.21867 0.96478 0.95337 0.91456 1.21567 0.97907 0.96841 0.98438 1.21440 0.98443 0.95510 0.98588 1.18572 0.93495 0.91943 0.92537 0.98771 1.21547 0.94589 1.07898 1.33149 0.92861 1.25727 0.95840 1.00391 0.96635 1.70048 1.10084 1.34555 1.40963 0.85624 0.79056 0.79632 0.77725 1.20239 1.21079 1.19176 1.21955 0.94305 0.91386 0.96762 1.22448 0.95153 0.95241 0.95882 1.20104 1.03374 0.90050 0.98842 1.77165 1.25158 0.97587 1.15632 0.88091 0.93377 0.93368 0.89001 0.85698 0.78389 0.93909 0.90471 0.90769 0.95413 0.93986 0.91736 0.92671 0.95747 0.93204 0.96527 0.92277 0.91401 0.90096 0.90666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 10.10 71.98 0.73 -1.58 16 2 C 0.12 1.71 7.23 86.38 0.62 2.33 16 3 N -0.38 -8.63 3.68 -348.07 -1.28 -9.91 16 4 C 0.06 1.42 10.51 83.54 0.88 2.30 16 5 C -0.24 -6.60 4.71 -20.14 -0.09 -6.69 16 6 C 0.14 4.03 5.17 85.56 0.44 4.47 16 7 N -0.54 -19.64 4.65 -900.94 -4.19 -23.83 16 8 C 0.08 2.63 5.31 86.32 0.46 3.09 16 9 C -0.11 -4.40 6.09 30.64 0.19 -4.21 16 10 C -0.10 -4.97 5.02 30.67 0.15 -4.82 16 11 C 0.05 2.75 2.26 -11.49 -0.03 2.73 16 12 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 13 C -0.53 -29.80 8.57 25.60 0.22 -29.58 16 14 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 15 C 0.01 0.70 5.30 84.65 0.45 1.15 16 16 N -0.92 -54.11 11.35 21.45 0.24 -53.86 16 17 Si 0.95 44.09 29.54 68.60 2.03 46.11 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 19 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 20 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 21 C 0.08 3.52 4.68 86.32 0.40 3.93 16 22 C 0.08 2.33 7.22 43.10 0.31 2.64 16 23 C -0.07 -1.75 10.26 71.23 0.73 -1.02 16 24 N -0.33 -9.78 12.42 -47.39 -0.59 -10.37 16 25 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.09 1.07 8.14 -2.39 -0.02 1.06 16 29 H 0.12 0.91 8.07 -2.39 -0.02 0.89 16 30 H 0.20 2.99 8.06 -2.91 -0.02 2.97 16 31 H 0.04 1.13 8.12 -2.38 -0.02 1.12 16 32 H 0.08 2.21 7.43 -2.39 -0.02 2.19 16 33 H 0.07 2.31 6.46 -2.39 -0.02 2.30 16 34 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 36 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.05 3.07 6.15 -2.38 -0.01 3.05 16 38 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 40 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.06 2.45 8.01 -2.39 -0.02 2.44 16 42 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 43 H 0.08 2.06 7.50 -2.39 -0.02 2.05 16 44 H 0.07 1.77 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -67.65 348.93 2.63 -65.02 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: 0.95 Total: 12.10 kcal Atomic # 6 Polarization: -30.72 SS G_CDS: 5.46 Total: -25.26 kcal Atomic # 7 Polarization: -92.16 SS G_CDS: -5.81 Total: -97.97 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Total: -67.65 2.63 -65.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895313510.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.666 kcal (2) G-P(sol) polarization free energy of solvation -67.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds