Wall clock time and date at job start Thu Apr 9 2020 13:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47239 * 2 1 4 4 C 1.53002 * 109.47327 * 239.99813 * 2 1 3 5 5 C 1.50696 * 109.46919 * 64.99798 * 4 2 1 6 6 H 1.07999 * 120.00202 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99746 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99573 * 0.27650 * 7 5 4 9 9 Si 1.86800 * 119.99781 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 89.99934 * 9 7 5 11 11 H 1.48499 * 109.47026 * 209.99782 * 9 7 5 12 12 H 1.48496 * 109.47474 * 329.99818 * 9 7 5 13 13 C 1.52999 * 109.47107 * 119.99444 * 2 1 3 14 14 N 1.46903 * 109.47368 * 295.00343 * 13 2 1 15 15 C 1.46898 * 111.00043 * 179.97438 * 14 13 2 16 16 C 1.50697 * 109.47119 * 179.97438 * 15 14 13 17 17 C 1.39874 * 125.89507 * 94.71554 * 16 15 14 18 18 C 1.35316 * 107.91640 * 179.86510 * 17 16 15 19 19 C 1.50704 * 126.12460 * 180.14640 * 18 17 16 20 20 C 1.53000 * 117.49882 * 34.04063 * 19 18 17 21 21 C 1.52999 * 117.50071 * 325.37811 * 19 18 17 22 22 N 1.34949 * 107.74865 * 0.39465 * 18 17 16 23 23 C 1.46494 * 126.03847 * 179.75280 * 22 18 17 24 24 N 1.30832 * 125.90071 * 275.02403 * 16 15 14 25 25 H 1.08997 * 109.46686 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47004 * 300.00313 * 1 2 3 27 27 H 1.08997 * 109.47105 * 60.00166 * 1 2 3 28 28 H 1.09000 * 109.46497 * 305.00064 * 4 2 1 29 29 H 1.08999 * 109.46623 * 185.00128 * 4 2 1 30 30 H 0.97001 * 120.00651 * 359.71956 * 8 7 5 31 31 H 1.09008 * 109.47057 * 55.00147 * 13 2 1 32 32 H 1.09005 * 109.47222 * 174.99830 * 13 2 1 33 33 H 1.00898 * 110.99650 * 303.95303 * 14 13 2 34 34 H 1.09006 * 109.47224 * 299.99867 * 15 14 13 35 35 H 1.09009 * 109.47278 * 59.99601 * 15 14 13 36 36 H 1.08001 * 126.04321 * 359.97438 * 17 16 15 37 37 H 1.08999 * 115.54894 * 179.70729 * 19 18 17 38 38 H 1.08997 * 117.50007 * 359.97438 * 20 19 18 39 39 H 1.08998 * 117.49679 * 145.02077 * 20 19 18 40 40 H 1.09000 * 117.49680 * 214.98118 * 21 19 18 41 41 H 1.09001 * 117.49606 * 359.97438 * 21 19 18 42 42 H 1.08996 * 109.47279 * 270.02208 * 23 22 18 43 43 H 1.08999 * 109.47273 * 30.02152 * 23 22 18 44 44 H 1.09002 * 109.47470 * 150.02427 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0569 -2.4765 6 1 1.0800 0.9740 -2.3757 7 6 1.9925 -0.4024 -3.7283 8 7 2.6705 -1.5225 -3.8513 9 14 1.4976 0.5619 -5.2497 10 1 2.5628 1.5414 -5.5830 11 1 1.3103 -0.3724 -6.3887 12 1 0.2265 1.2832 -4.9870 13 6 2.0400 -0.7211 1.2493 14 7 1.6514 0.0376 2.4457 15 6 2.1247 -0.6269 3.6673 16 6 1.7087 0.1789 4.8708 17 6 0.5579 -0.0281 5.6385 18 6 0.5449 0.8962 6.6267 19 6 -0.5108 1.0430 7.6921 20 6 -1.1800 -0.2340 8.2042 21 6 -1.9565 0.7287 7.3022 22 7 1.6438 1.6665 6.4840 23 6 2.0223 2.7948 7.3383 24 7 2.3586 1.1965 5.3748 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6054 -1.7198 -1.2950 29 1 3.1264 -0.7995 -1.2054 30 1 2.9272 -2.0234 -3.0613 31 1 1.6054 -1.7197 1.2953 32 1 3.1264 -0.7994 1.2057 33 1 1.9881 0.9874 2.3966 34 1 1.6903 -1.6247 3.7298 35 1 3.2117 -0.7049 3.6406 36 1 -0.1875 -0.7918 5.4729 37 1 -0.3465 1.8474 8.4091 38 1 -0.8570 -1.1803 7.7702 39 1 -1.4563 -0.2696 9.2580 40 1 -2.7432 1.3260 7.7629 41 1 -2.1440 0.4161 6.2749 42 1 1.5893 3.7127 6.9408 43 1 1.6508 2.6259 8.3490 44 1 3.1083 2.8853 7.3607 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897232196.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:56:00 Heat of formation + Delta-G solvation = 80.750106 kcal Electronic energy + Delta-G solvation = -20756.963964 eV Core-core repulsion = 17710.973056 eV Total energy + Delta-G solvation = -3045.990909 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.46675 -37.50560 -36.89876 -34.62185 -33.15023 -31.74925 -29.95203 -28.04381 -26.36527 -25.57014 -23.96584 -23.64883 -22.76647 -22.18367 -20.22053 -19.46054 -19.08790 -17.25577 -16.64494 -15.72087 -15.40879 -15.32538 -14.79664 -14.42272 -14.29239 -13.94337 -13.66792 -13.36569 -13.07036 -12.81501 -12.70019 -12.18216 -12.00749 -11.93241 -11.61474 -11.58780 -11.35151 -11.23079 -11.04284 -10.93988 -10.63084 -10.54458 -10.16464 -10.04942 -9.75353 -9.43316 -9.12831 -8.53619 -8.41048 -8.24215 -8.11332 -6.27339 -3.94892 1.64063 2.32162 2.61885 3.48266 3.52188 3.57691 3.67835 4.06720 4.26535 4.47268 4.53939 4.58769 4.60533 4.68032 4.86580 4.93099 5.12215 5.19006 5.25194 5.30786 5.48976 5.53563 5.56512 5.66274 5.73699 5.75088 5.79207 5.89939 6.10341 6.12324 6.37654 6.50466 6.56710 6.66490 6.86783 6.95438 7.13216 7.18346 7.31980 7.48015 7.59937 7.65774 7.69980 8.33254 8.56592 8.98417 9.76367 11.13272 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.030587 B = 0.002694 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.198264 B =10389.966167 C =10601.414830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.075 4.075 3 H 0.054 0.946 4 C 0.014 3.986 5 C -0.592 4.592 6 H 0.050 0.950 7 C 0.012 3.988 8 N -0.917 5.917 9 Si 1.070 2.930 10 H -0.289 1.289 11 H -0.285 1.285 12 H -0.289 1.289 13 C 0.063 3.937 14 N -0.680 5.680 15 C 0.138 3.862 16 C 0.089 3.911 17 C -0.251 4.251 18 C 0.112 3.888 19 C -0.107 4.107 20 C -0.161 4.161 21 C -0.159 4.159 22 N -0.374 5.374 23 C 0.102 3.898 24 N -0.293 5.293 25 H 0.039 0.961 26 H 0.043 0.957 27 H 0.054 0.946 28 H 0.008 0.992 29 H 0.003 0.997 30 H 0.268 0.732 31 H 0.068 0.932 32 H 0.025 0.975 33 H 0.341 0.659 34 H 0.089 0.911 35 H 0.042 0.958 36 H 0.145 0.855 37 H 0.113 0.887 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.969 5.065 27.381 28.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.094 4.094 3 H 0.073 0.927 4 C -0.024 4.024 5 C -0.631 4.631 6 H 0.068 0.932 7 C -0.191 4.191 8 N -0.554 5.554 9 Si 0.899 3.101 10 H -0.216 1.216 11 H -0.211 1.211 12 H -0.215 1.215 13 C -0.065 4.065 14 N -0.312 5.312 15 C 0.008 3.992 16 C -0.078 4.078 17 C -0.280 4.280 18 C -0.015 4.015 19 C -0.127 4.127 20 C -0.198 4.198 21 C -0.197 4.197 22 N -0.156 5.156 23 C -0.039 4.039 24 N -0.115 5.115 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.026 0.974 29 H 0.021 0.979 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.159 0.841 34 H 0.108 0.892 35 H 0.060 0.940 36 H 0.163 0.837 37 H 0.131 0.869 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.123 0.877 42 H 0.092 0.908 43 H 0.102 0.898 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.422 5.668 25.750 26.918 hybrid contribution 0.263 -0.159 1.821 1.847 sum -5.159 5.509 27.571 28.585 Atomic orbital electron populations 1.21574 0.95488 1.00543 1.00296 1.21056 0.96175 0.98856 0.93322 0.92730 1.19255 0.95138 0.95641 0.92331 1.22068 1.38482 1.10250 0.92266 0.93188 1.25822 0.94807 0.97152 1.01367 1.70744 1.36469 1.14714 1.33508 0.83534 0.75963 0.75230 0.75412 1.21599 1.21090 1.21507 1.22187 0.97229 0.97754 0.89342 1.60522 1.63919 1.05970 1.00740 1.20237 0.97736 0.96008 0.85264 1.22166 0.93885 0.94718 0.96999 1.20981 1.02224 1.05562 0.99252 1.20087 0.89846 0.93877 0.97675 1.20401 0.92017 1.01537 0.98701 1.23087 1.02743 0.93932 1.00078 1.23107 0.92295 1.02645 1.01613 1.48293 1.17657 1.25914 1.23745 1.21793 1.02964 0.86457 0.92718 1.77352 1.19680 1.14578 0.99896 0.94214 0.93776 0.92712 0.97418 0.97853 0.92148 0.91362 0.95689 0.84130 0.89244 0.94030 0.83727 0.86935 0.87924 0.88112 0.88059 0.87712 0.90839 0.89818 0.89339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.49 8.89 37.16 0.33 -2.16 16 2 C -0.08 -1.60 2.48 -90.62 -0.22 -1.83 16 3 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 4 C 0.01 0.36 3.76 -27.88 -0.10 0.26 16 5 C -0.59 -17.16 8.41 -34.44 -0.29 -17.45 16 6 H 0.05 1.43 7.06 -52.49 -0.37 1.06 16 7 C 0.01 0.34 5.46 -17.82 -0.10 0.25 16 8 N -0.92 -28.77 13.65 55.43 0.76 -28.01 16 9 Si 1.07 26.03 29.90 -169.99 -5.08 20.94 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.06 1.14 5.07 -3.82 -0.02 1.12 16 14 N -0.68 -10.85 5.94 -115.05 -0.68 -11.53 16 15 C 0.14 1.94 6.24 -4.98 -0.03 1.91 16 16 C 0.09 1.26 6.73 -82.41 -0.55 0.70 16 17 C -0.25 -3.15 9.74 -40.01 -0.39 -3.54 16 18 C 0.11 1.24 6.62 -82.26 -0.54 0.70 16 19 C -0.11 -0.81 5.97 -91.77 -0.55 -1.36 16 20 C -0.16 -1.00 10.05 -26.69 -0.27 -1.27 16 21 C -0.16 -1.06 10.05 -26.69 -0.27 -1.33 16 22 N -0.37 -4.44 4.01 -63.89 -0.26 -4.70 16 23 C 0.10 0.74 11.22 59.84 0.67 1.41 16 24 N -0.29 -4.32 12.58 33.67 0.42 -3.90 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.04 0.82 7.75 -51.93 -0.40 0.42 16 27 H 0.05 1.20 6.95 -51.93 -0.36 0.84 16 28 H 0.01 0.21 8.00 -51.93 -0.42 -0.21 16 29 H 0.00 0.09 8.01 -51.93 -0.42 -0.33 16 30 H 0.27 8.37 7.22 -40.82 -0.29 8.08 16 31 H 0.07 1.21 8.14 -51.92 -0.42 0.79 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.34 5.59 8.72 -39.29 -0.34 5.24 16 34 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.04 0.58 8.14 -51.92 -0.42 0.16 16 36 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 37 H 0.11 0.65 7.24 -51.93 -0.38 0.28 16 38 H 0.10 0.69 7.94 -51.93 -0.41 0.28 16 39 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.10 0.81 7.95 -51.93 -0.41 0.40 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.08 0.39 7.22 -51.93 -0.37 0.01 16 44 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 361.65 15.07 5.45 5.45 Total: -1.00 -33.67 361.65 -9.36 -43.03 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -7.63 Total: 1.31 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: -2.34 Total: -22.59 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: 0.24 Total: -48.14 kcal Atomic # 14 Polarization: 26.03 SS G_CDS: -5.08 Total: 20.94 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.67 -9.36 -43.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897232196.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.780 kcal (2) G-P(sol) polarization free energy of solvation -33.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds