Wall clock time and date at job start Thu Apr 9 2020 13:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46834 * 111.00565 * 2 1 4 4 C 1.53179 * 109.46275 * 187.69166 * 3 2 1 5 5 C 1.52912 * 108.99327 * 302.93483 * 4 3 2 6 6 C 1.53189 * 113.47113 * 283.64529 * 5 4 3 7 7 C 1.53567 * 83.46681 * 270.78949 * 6 5 4 8 8 N 1.47095 * 113.54570 * 184.77444 * 5 4 3 9 9 C 1.46903 * 110.99825 * 336.51354 * 8 5 4 10 10 C 1.52999 * 109.47368 * 187.39177 * 9 8 5 11 11 H 1.09001 * 109.46617 * 55.00168 * 10 9 8 12 12 C 1.47200 * 109.46851 * 295.00226 * 10 9 8 13 13 N 7.73719 * 160.70853 * 25.84059 * 2 1 3 14 14 C 1.53002 * 109.47329 * 174.99975 * 10 9 8 15 15 C 1.50696 * 109.46919 * 185.00033 * 14 10 9 16 16 H 1.07999 * 120.00202 * 359.97438 * 15 14 10 17 17 C 1.37884 * 119.99746 * 180.02562 * 15 14 10 18 18 N 1.31514 * 119.99573 * 0.27650 * 17 15 14 19 19 Si 1.86800 * 119.99781 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46758 * 89.99934 * 19 17 15 21 21 H 1.48499 * 109.47026 * 209.99782 * 19 17 15 22 22 H 1.48496 * 109.47474 * 329.99818 * 19 17 15 23 23 C 1.52908 * 112.43865 * 54.11901 * 5 4 3 24 24 C 1.46827 * 110.99934 * 124.52204 * 2 1 3 25 25 H 1.09004 * 109.46708 * 59.99652 * 1 2 3 26 26 H 1.08993 * 109.47384 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46894 * 300.00254 * 1 2 3 28 28 H 1.09004 * 109.46681 * 67.69479 * 3 2 1 29 29 H 1.08996 * 109.47285 * 307.69519 * 3 2 1 30 30 H 1.09004 * 109.55604 * 183.07390 * 4 3 2 31 31 H 1.09004 * 109.55032 * 62.78187 * 4 3 2 32 32 H 1.08997 * 114.18102 * 157.16977 * 6 5 4 33 33 H 1.08993 * 114.36464 * 24.42186 * 6 5 4 34 34 H 1.09008 * 113.46331 * 219.48615 * 7 6 5 35 35 H 1.09005 * 113.46784 * 89.06141 * 7 6 5 36 36 H 1.09008 * 109.46872 * 67.39259 * 9 8 5 37 37 H 1.09005 * 109.47368 * 307.39601 * 9 8 5 38 38 H 1.09000 * 109.46497 * 65.00298 * 14 10 9 39 39 H 1.08999 * 109.46623 * 305.00362 * 14 10 9 40 40 H 0.97001 * 120.00651 * 359.71956 * 18 17 15 41 41 H 1.08999 * 109.54855 * 65.73529 * 23 5 4 42 42 H 1.08996 * 109.55200 * 186.03227 * 23 5 4 43 43 H 1.09002 * 109.47440 * 292.30738 * 24 2 1 44 44 H 1.09007 * 109.46840 * 52.30622 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3708 0.0000 4 6 3.5144 1.3342 -0.1933 5 6 4.1362 0.4791 0.9114 6 6 4.2099 1.1913 2.2657 7 6 5.5734 1.6672 1.7436 8 7 5.6069 0.4664 0.8871 9 6 6.1141 0.7896 -0.4532 10 6 7.6303 0.5876 -0.4872 11 1 7.8690 -0.4260 -0.1650 12 6 8.2745 1.5544 0.4166 13 7 8.7717 2.3006 1.1142 14 6 8.1417 0.8032 -1.9130 15 6 9.6134 0.4848 -1.9723 16 1 10.1323 0.1615 -1.0820 17 6 10.2979 0.6074 -3.1630 18 7 9.6674 1.0073 -4.2456 19 14 12.1224 0.2135 -3.2362 20 1 12.3058 -1.2230 -3.5652 21 1 12.7671 1.0471 -4.2824 22 1 12.7447 0.5031 -1.9194 23 6 3.5143 -0.9156 0.9898 24 6 1.9951 -0.7768 1.1294 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.7614 1.8497 0.9508 29 1 1.5390 1.9352 -0.8131 30 1 3.9136 2.3470 -0.1390 31 1 3.7481 0.9001 -1.1655 32 1 4.2693 0.5186 3.1213 33 1 3.4780 1.9886 2.3948 34 1 6.3511 1.6774 2.5074 35 1 5.5216 2.5999 1.1817 36 1 5.8805 1.8279 -0.6893 37 1 5.6437 0.1354 -1.1873 38 1 7.9826 1.8419 -2.2028 39 1 7.6004 0.1484 -2.5960 40 1 8.7200 1.2122 -4.2075 41 1 3.7480 -1.4707 0.0813 42 1 3.9133 -1.4448 1.8551 43 1 1.7612 -0.2650 2.0629 44 1 1.5387 -1.7667 1.1335 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899911059.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:56:12 Heat of formation + Delta-G solvation = 53.578440 kcal Electronic energy + Delta-G solvation = -22172.526329 eV Core-core repulsion = 19125.357169 eV Total energy + Delta-G solvation = -3047.169160 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.35483 -37.87824 -36.39198 -34.08037 -32.51665 -31.50039 -31.16611 -29.03979 -26.34693 -25.41984 -23.88387 -23.05494 -22.56819 -21.88495 -21.07917 -18.02434 -17.16492 -16.69424 -16.24519 -15.64145 -15.29955 -15.22891 -15.03730 -14.53557 -13.79005 -13.55661 -13.41733 -13.23498 -12.95785 -12.73272 -12.50577 -12.32761 -12.17563 -11.98408 -11.83467 -11.61442 -11.40262 -11.30077 -11.22111 -11.06824 -10.91761 -10.79426 -10.56810 -10.30738 -10.13269 -9.99613 -9.78326 -8.77482 -8.63107 -8.52626 -8.38336 -6.41232 -4.11965 3.43558 3.48140 3.58398 3.63068 3.65410 3.67842 3.92685 4.34502 4.49370 4.52434 4.67594 4.76831 4.87585 4.96922 5.03622 5.12906 5.20489 5.27245 5.28095 5.31204 5.36325 5.37391 5.46082 5.53206 5.59258 5.62149 5.67207 5.74378 5.81069 5.87442 5.94340 6.04072 6.08684 6.20797 6.31852 6.44259 6.50691 6.81025 6.85127 7.12763 7.14826 7.28669 8.06376 8.35802 8.45688 8.81713 9.59043 10.99602 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.026617 B = 0.003963 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.699120 B = 7064.233345 C = 7623.116740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.544 5.544 3 C 0.063 3.937 4 C -0.122 4.122 5 C 0.060 3.940 6 C -0.139 4.139 7 C -0.002 4.002 8 N -0.461 5.461 9 C 0.028 3.972 10 C 0.020 3.980 11 H 0.109 0.891 12 C 0.248 3.752 13 N -0.478 5.478 14 C 0.019 3.981 15 C -0.605 4.605 16 H 0.051 0.949 17 C 0.020 3.980 18 N -0.910 5.910 19 Si 1.068 2.932 20 H -0.286 1.286 21 H -0.284 1.284 22 H -0.289 1.289 23 C -0.091 4.091 24 C 0.059 3.941 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.022 0.978 28 H 0.033 0.967 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.050 0.950 37 H 0.092 0.908 38 H 0.014 0.986 39 H 0.029 0.971 40 H 0.269 0.731 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.032 0.968 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.698 -2.301 9.887 22.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.269 5.269 3 C -0.065 4.065 4 C -0.161 4.161 5 C -0.031 4.031 6 C -0.177 4.177 7 C -0.131 4.131 8 N -0.181 5.181 9 C -0.102 4.102 10 C -0.002 4.002 11 H 0.126 0.874 12 C -0.069 4.069 13 N -0.154 5.154 14 C -0.020 4.020 15 C -0.643 4.643 16 H 0.069 0.931 17 C -0.184 4.184 18 N -0.545 5.545 19 Si 0.897 3.103 20 H -0.212 1.212 21 H -0.210 1.210 22 H -0.215 1.215 23 C -0.129 4.129 24 C -0.069 4.069 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.041 0.959 28 H 0.051 0.949 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.110 0.890 38 H 0.032 0.968 39 H 0.047 0.953 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.051 0.949 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.061 -2.054 9.675 19.720 hybrid contribution -2.044 0.937 1.088 2.498 sum -19.105 -1.117 10.763 21.956 Atomic orbital electron populations 1.22340 0.87365 1.02021 1.00490 1.61802 1.07372 1.13733 1.43985 1.22021 0.95134 0.89066 1.00313 1.21902 0.94655 0.99851 0.99714 1.22454 0.89897 0.95913 0.94827 1.23242 0.97174 1.00089 0.97181 1.23801 0.97862 0.93400 0.97998 1.68948 1.08453 1.30546 1.10203 1.22791 0.94925 1.00609 0.91852 1.19037 0.90896 0.95314 0.94917 0.87358 1.29109 0.92257 0.93371 0.92122 1.80999 1.10177 1.11571 1.12699 1.19282 0.97522 0.97169 0.88013 1.21999 0.93871 1.50354 0.98073 0.93093 1.25787 1.06351 0.94067 0.92194 1.70773 1.12118 1.41794 1.29860 0.83544 0.74538 0.76713 0.75554 1.21230 1.20952 1.21509 1.21400 0.92898 0.95397 1.03183 1.22099 0.95748 0.97890 0.91170 0.91389 0.91376 0.95916 0.94887 0.90645 0.91125 0.89702 0.89090 0.91206 0.89984 0.91503 0.93219 0.89015 0.96798 0.95283 0.92045 0.90674 0.90634 0.94938 0.90668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.58 60.06 0.58 0.77 16 2 N -0.54 -5.19 4.87 -242.79 -1.18 -6.37 16 3 C 0.06 0.59 5.40 -3.77 -0.02 0.57 16 4 C -0.12 -1.31 3.86 -26.68 -0.10 -1.42 16 5 C 0.06 0.67 0.74 -136.39 -0.10 0.57 16 6 C -0.14 -1.48 7.26 -26.34 -0.19 -1.67 16 7 C 0.00 -0.02 5.98 -8.08 -0.05 -0.07 16 8 N -0.46 -6.40 6.04 -230.39 -1.39 -7.79 16 9 C 0.03 0.43 3.36 -3.82 -0.01 0.41 16 10 C 0.02 0.39 2.42 -93.41 -0.23 0.17 16 11 H 0.11 2.08 8.14 -51.93 -0.42 1.66 16 12 C 0.25 5.26 12.37 -20.76 -0.26 5.00 16 13 N -0.48 -10.75 18.54 42.15 0.78 -9.97 16 14 C 0.02 0.44 3.74 -27.88 -0.10 0.34 16 15 C -0.60 -16.61 8.60 -34.44 -0.30 -16.90 16 16 H 0.05 1.42 7.59 -52.49 -0.40 1.02 16 17 C 0.02 0.58 5.46 -17.82 -0.10 0.48 16 18 N -0.91 -27.05 13.65 55.43 0.76 -26.29 16 19 Si 1.07 25.41 29.90 -169.99 -5.08 20.33 16 20 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 23 C -0.09 -0.94 5.57 -26.68 -0.15 -1.09 16 24 C 0.06 0.53 5.40 -3.77 -0.02 0.51 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.46 8.07 -51.93 -0.42 0.04 16 27 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.03 0.30 7.55 -51.93 -0.39 -0.09 16 29 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 30 H 0.07 0.76 6.54 -51.93 -0.34 0.42 16 31 H 0.08 1.00 6.97 -51.93 -0.36 0.64 16 32 H 0.09 0.93 8.07 -51.93 -0.42 0.51 16 33 H 0.07 0.66 7.55 -51.93 -0.39 0.27 16 34 H 0.08 1.22 8.10 -51.92 -0.42 0.80 16 35 H 0.07 0.91 6.65 -51.93 -0.35 0.57 16 36 H 0.05 0.76 6.27 -51.92 -0.33 0.43 16 37 H 0.09 1.34 7.34 -51.93 -0.38 0.96 16 38 H 0.01 0.34 8.00 -51.93 -0.42 -0.07 16 39 H 0.03 0.68 8.01 -51.93 -0.42 0.27 16 40 H 0.27 7.84 7.22 -40.82 -0.29 7.55 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 43 H 0.03 0.28 8.03 -51.93 -0.42 -0.13 16 44 H 0.07 0.61 8.05 -51.92 -0.42 0.19 16 LS Contribution 342.83 15.07 5.17 5.17 Total: -1.00 -30.63 342.83 -9.49 -40.12 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -7.48 Total: -2.86 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -1.05 Total: -12.32 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: -1.04 Total: -50.43 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -5.08 Total: 20.33 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.63 -9.49 -40.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899911059.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.694 kcal (2) G-P(sol) polarization free energy of solvation -30.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds