Wall clock time and date at job start Thu Apr 9 2020 13:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 112.88927 * 2 1 4 4 C 1.54370 * 113.66635 * 228.52688 * 2 1 3 5 5 H 1.08998 * 114.01420 * 26.87019 * 4 2 1 6 6 C 1.53011 * 111.26563 * 156.27481 * 4 2 1 7 7 C 1.54281 * 108.52416 * 143.45242 * 6 4 2 8 8 C 1.52605 * 109.52081 * 297.36048 * 7 6 4 9 9 C 1.51630 * 111.07509 * 63.52599 * 8 7 6 10 10 C 1.50502 * 114.39682 * 313.09659 * 9 8 7 11 11 H 1.08999 * 110.66634 * 162.23877 * 10 9 8 12 12 C 1.53229 * 115.71425 * 290.07155 * 10 9 8 13 13 H 1.09005 * 113.84370 * 32.89538 * 12 10 9 14 14 N 1.46900 * 113.74942 * 261.58052 * 12 10 9 15 15 C 1.46900 * 110.99865 * 108.88808 * 14 12 10 16 16 C 1.53001 * 109.46760 * 174.98680 * 15 14 12 17 17 C 1.50698 * 115.55282 * 280.07649 * 16 15 14 18 18 H 1.07994 * 120.00579 * 144.16697 * 17 16 15 19 19 C 1.37882 * 120.00016 * 324.16345 * 17 16 15 20 20 N 1.31519 * 119.99728 * 333.61244 * 19 17 16 21 21 Si 1.86798 * 120.00009 * 153.60216 * 19 17 16 22 22 H 1.48498 * 109.46834 * 90.00627 * 21 19 17 23 23 H 1.48503 * 109.47006 * 210.00291 * 21 19 17 24 24 H 1.48495 * 109.47503 * 330.00318 * 21 19 17 25 25 C 1.53000 * 117.49919 * 134.36908 * 16 15 14 26 26 C 1.53001 * 117.50070 * 65.74397 * 16 15 14 27 27 H 1.08996 * 109.46948 * 285.91754 * 1 2 3 28 28 H 1.08993 * 109.46878 * 45.91684 * 1 2 3 29 29 H 1.08999 * 109.46653 * 165.91829 * 1 2 3 30 30 H 1.08999 * 109.47378 * 183.71232 * 3 2 1 31 31 H 1.09000 * 109.47044 * 303.72181 * 3 2 1 32 32 H 1.09004 * 109.47073 * 63.71249 * 3 2 1 33 33 H 1.08998 * 109.51939 * 263.99795 * 6 4 2 34 34 H 1.09000 * 109.51628 * 24.17417 * 6 4 2 35 35 H 1.09004 * 109.37337 * 177.26336 * 7 6 4 36 36 H 1.08997 * 109.19557 * 57.35504 * 7 6 4 37 37 H 1.08989 * 109.15972 * 303.10969 * 8 7 6 38 38 H 1.08999 * 109.14940 * 183.93256 * 8 7 6 39 39 H 1.08997 * 108.49781 * 191.81519 * 9 8 7 40 40 H 1.09007 * 108.49737 * 74.36538 * 9 8 7 41 41 H 1.00901 * 111.00001 * 344.93009 * 14 12 10 42 42 H 1.08999 * 109.47141 * 294.98157 * 15 14 12 43 43 H 1.08994 * 109.47489 * 54.99295 * 15 14 12 44 44 H 0.96997 * 119.99823 * 185.04468 * 20 19 17 45 45 H 1.09005 * 117.50078 * 359.97438 * 25 16 15 46 46 H 1.09004 * 117.50044 * 145.02074 * 25 16 15 47 47 H 1.09003 * 117.50159 * 214.97612 * 26 16 15 48 48 H 1.08997 * 117.49783 * 0.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1251 1.4095 0.0000 4 6 2.1497 -0.9364 -1.0594 5 1 1.5143 -1.1044 -1.9289 6 6 3.5680 -0.4961 -1.4275 7 6 4.4257 -1.7560 -1.6673 8 6 4.5109 -2.5677 -0.3778 9 6 3.1437 -3.0730 0.0398 10 6 2.0568 -2.0329 -0.0031 11 1 1.0736 -2.5036 -0.0029 12 6 2.1480 -0.9317 1.0584 13 1 3.1694 -0.6678 1.3329 14 7 1.2827 -1.1598 2.2234 15 6 2.0770 -1.5082 3.4090 16 6 1.1562 -1.6152 4.6262 17 6 0.7657 -0.3064 5.2630 18 1 -0.2233 -0.1818 5.6784 19 6 1.6712 0.7321 5.3153 20 7 2.9619 0.4799 5.3122 21 14 1.0646 2.4973 5.3901 22 1 0.8948 2.9026 6.8086 23 1 2.0551 3.3893 4.7356 24 1 -0.2384 2.6033 4.6857 25 6 1.3412 -2.8223 5.5480 26 6 0.1192 -2.7402 4.6309 27 1 -0.3633 0.2818 0.9882 28 1 -0.3633 0.7149 -0.7382 29 1 -0.3632 -0.9968 -0.2500 30 1 3.2112 1.3454 -0.0665 31 1 1.7408 1.9662 -0.8548 32 1 1.8471 1.9213 0.9214 33 1 3.5366 0.1183 -2.3273 34 1 3.9951 0.0801 -0.6067 35 1 5.4270 -1.4580 -1.9781 36 1 3.9649 -2.3597 -2.4491 37 1 4.9173 -1.9391 0.4143 38 1 5.1743 -3.4184 -0.5341 39 1 3.2134 -3.4588 1.0568 40 1 2.8624 -3.8945 -0.6193 41 1 0.5935 -1.8704 2.0283 42 1 2.5748 -2.4639 3.2449 43 1 2.8243 -0.7347 3.5858 44 1 3.5978 1.2040 5.4226 45 1 2.1186 -3.5404 5.2870 46 1 1.1806 -2.6699 6.6153 47 1 -0.8453 -2.5337 5.0949 48 1 0.0932 -3.4043 3.7670 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926345834.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:56:22 Heat of formation + Delta-G solvation = 29.901756 kcal Electronic energy + Delta-G solvation = -23560.014938 eV Core-core repulsion = 20615.359423 eV Total energy + Delta-G solvation = -2944.655515 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.89843 -36.82036 -35.10473 -32.94768 -32.08107 -30.74915 -29.30890 -27.13922 -25.91405 -25.08164 -23.52973 -22.37263 -21.59899 -20.92596 -19.01647 -18.90028 -17.40968 -16.01409 -15.70848 -14.86587 -14.69364 -14.52556 -14.37619 -13.77424 -13.59631 -13.41089 -13.05488 -12.93651 -12.51246 -12.24811 -12.01765 -11.84677 -11.68790 -11.56889 -11.40347 -11.08237 -11.03475 -10.85777 -10.75185 -10.62841 -10.48494 -10.40027 -10.19558 -10.10783 -9.82419 -9.62973 -9.44150 -9.12834 -8.92096 -8.58082 -7.88214 -7.25448 -6.03239 -3.88627 3.34166 3.43105 3.51933 4.48225 4.62722 4.66940 4.79543 4.92066 5.06861 5.12357 5.24408 5.27845 5.32998 5.54862 5.61771 5.63654 5.68702 5.72403 5.77057 5.89563 5.96160 6.01455 6.07516 6.10435 6.15648 6.19921 6.21740 6.28396 6.32531 6.35645 6.38807 6.47034 6.47817 6.57281 6.65260 6.71721 6.74232 6.78436 6.89276 6.96063 7.04342 7.15647 7.41422 7.69644 8.04700 8.16867 8.36435 8.61530 9.00123 9.63744 11.02538 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.016813 B = 0.006513 C = 0.005649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.016279 B = 4298.081179 C = 4955.209424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.075 4.075 3 C -0.138 4.138 4 C -0.095 4.095 5 H 0.069 0.931 6 C -0.107 4.107 7 C -0.115 4.115 8 C -0.115 4.115 9 C -0.104 4.104 10 C -0.129 4.129 11 H 0.079 0.921 12 C 0.090 3.910 13 H 0.090 0.910 14 N -0.656 5.656 15 C 0.095 3.905 16 C 0.069 3.931 17 C -0.484 4.484 18 H 0.057 0.943 19 C 0.085 3.915 20 N -0.868 5.868 21 Si 0.879 3.121 22 H -0.285 1.285 23 H -0.286 1.286 24 H -0.271 1.271 25 C -0.207 4.207 26 C -0.212 4.212 27 H 0.077 0.923 28 H 0.042 0.958 29 H 0.046 0.954 30 H 0.057 0.943 31 H 0.045 0.955 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.049 0.951 41 H 0.326 0.674 42 H -0.010 1.010 43 H 0.111 0.889 44 H 0.260 0.740 45 H 0.059 0.941 46 H 0.076 0.924 47 H 0.073 0.927 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.615 -3.348 -13.989 14.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.076 4.076 3 C -0.195 4.195 4 C -0.114 4.114 5 H 0.088 0.912 6 C -0.144 4.144 7 C -0.153 4.153 8 C -0.152 4.152 9 C -0.141 4.141 10 C -0.149 4.149 11 H 0.097 0.903 12 C -0.022 4.022 13 H 0.108 0.892 14 N -0.284 5.284 15 C -0.033 4.033 16 C 0.068 3.932 17 C -0.521 4.521 18 H 0.075 0.925 19 C -0.118 4.118 20 N -0.504 5.504 21 Si 0.706 3.294 22 H -0.212 1.212 23 H -0.212 1.212 24 H -0.196 1.196 25 C -0.246 4.246 26 C -0.249 4.249 27 H 0.096 0.904 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.144 0.856 42 H 0.008 0.992 43 H 0.128 0.872 44 H 0.070 0.930 45 H 0.078 0.922 46 H 0.095 0.905 47 H 0.091 0.909 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.756 -2.579 -13.845 14.192 hybrid contribution -0.094 -0.176 -0.089 0.219 sum 1.662 -2.756 -13.934 14.301 Atomic orbital electron populations 1.21438 0.93307 1.00331 1.02657 1.22170 0.95758 0.94193 0.95473 1.21799 1.00367 0.95888 1.01411 1.22217 0.96257 0.96661 0.96270 0.91216 1.21766 0.94334 0.96926 1.01371 1.21587 0.99247 0.96890 0.97530 1.21097 0.96945 0.99498 0.97662 1.20536 0.94550 0.97905 1.01137 1.22415 0.98635 0.95110 0.98764 0.90310 1.23005 0.96548 0.93909 0.88695 0.89226 1.60216 1.15635 1.49773 1.02750 1.21689 0.95990 0.97938 0.87674 1.18882 0.93309 0.88240 0.92775 1.20281 0.98823 0.94856 1.38091 0.92460 1.24806 0.94401 0.98661 0.93957 1.70007 1.01211 1.32124 1.47104 0.86824 0.79378 0.85441 0.77750 1.21196 1.21197 1.19577 1.22999 0.98667 1.05748 0.97187 1.22788 0.94204 1.06545 1.01401 0.90401 0.93888 0.93513 0.92388 0.93552 0.92158 0.92052 0.90832 0.92466 0.92444 0.92094 0.92464 0.92249 0.93175 0.85626 0.99215 0.87169 0.93018 0.92230 0.90550 0.90867 0.92079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.76 8.55 37.16 0.32 -1.44 16 2 C -0.07 -1.11 1.32 -153.35 -0.20 -1.31 16 3 C -0.14 -2.04 8.66 37.16 0.32 -1.71 16 4 C -0.10 -1.22 3.72 -90.14 -0.34 -1.56 16 5 H 0.07 0.86 8.12 -51.93 -0.42 0.44 16 6 C -0.11 -1.26 4.76 -26.05 -0.12 -1.38 16 7 C -0.12 -1.26 5.90 -26.26 -0.15 -1.41 16 8 C -0.11 -1.39 5.78 -27.63 -0.16 -1.55 16 9 C -0.10 -1.37 5.50 -28.67 -0.16 -1.53 16 10 C -0.13 -1.80 3.03 -92.05 -0.28 -2.08 16 11 H 0.08 1.11 6.91 -51.93 -0.36 0.75 16 12 C 0.09 1.50 2.84 -67.09 -0.19 1.31 16 13 H 0.09 1.65 7.11 -51.93 -0.37 1.28 16 14 N -0.66 -12.90 5.49 -106.07 -0.58 -13.48 16 15 C 0.10 2.17 5.24 -3.82 -0.02 2.15 16 16 C 0.07 1.70 1.93 -155.66 -0.30 1.40 16 17 C -0.48 -13.26 8.94 -34.44 -0.31 -13.57 16 18 H 0.06 1.60 7.94 -52.49 -0.42 1.18 16 19 C 0.09 2.33 4.92 -17.82 -0.09 2.24 16 20 N -0.87 -24.09 11.44 55.43 0.63 -23.45 16 21 Si 0.88 21.26 29.62 -169.99 -5.03 16.22 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 25 C -0.21 -4.84 9.88 -26.73 -0.26 -5.10 16 26 C -0.21 -4.64 9.60 -26.73 -0.26 -4.89 16 27 H 0.08 1.33 7.67 -51.93 -0.40 0.93 16 28 H 0.04 0.57 8.13 -51.93 -0.42 0.14 16 29 H 0.05 0.64 7.07 -51.93 -0.37 0.27 16 30 H 0.06 0.81 5.49 -51.93 -0.29 0.53 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.95 5.11 -51.93 -0.27 0.68 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.81 7.95 -51.94 -0.41 0.40 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.05 0.61 8.14 -51.92 -0.42 0.18 16 41 H 0.33 6.09 7.73 -39.29 -0.30 5.79 16 42 H -0.01 -0.23 7.95 -51.93 -0.41 -0.64 16 43 H 0.11 2.85 5.52 -51.93 -0.29 2.57 16 44 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 45 H 0.06 1.31 8.09 -51.93 -0.42 0.89 16 46 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 47 H 0.07 1.60 8.14 -51.93 -0.42 1.17 16 48 H 0.06 1.21 8.05 -51.93 -0.42 0.79 16 LS Contribution 357.02 15.07 5.38 5.38 Total: -1.00 -26.87 357.02 -10.72 -37.60 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -8.92 Total: 8.17 kcal Atomic # 6 Polarization: -28.24 SS G_CDS: -2.20 Total: -30.44 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.05 Total: -36.93 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -26.87 -10.72 -37.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926345834.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.501 kcal (2) G-P(sol) polarization free energy of solvation -26.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds