Wall clock time and date at job start Thu Apr 9 2020 13:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 112.88927 * 2 1 4 4 C 1.54370 * 113.66635 * 228.52688 * 2 1 3 5 5 H 1.08998 * 114.01420 * 26.87019 * 4 2 1 6 6 C 1.53011 * 111.26563 * 156.27481 * 4 2 1 7 7 C 1.54281 * 108.52416 * 143.45242 * 6 4 2 8 8 C 1.52605 * 109.52081 * 297.36048 * 7 6 4 9 9 C 1.51630 * 111.07509 * 63.52599 * 8 7 6 10 10 C 1.50502 * 114.39682 * 313.09659 * 9 8 7 11 11 H 1.08999 * 110.66634 * 162.23877 * 10 9 8 12 12 C 1.53229 * 115.71425 * 290.07155 * 10 9 8 13 13 H 1.09005 * 113.84370 * 32.89538 * 12 10 9 14 14 N 1.46900 * 113.74942 * 261.58052 * 12 10 9 15 15 C 1.46900 * 110.99865 * 108.88808 * 14 12 10 16 16 C 1.53001 * 109.46760 * 174.98680 * 15 14 12 17 17 C 1.50698 * 115.55282 * 280.07649 * 16 15 14 18 18 H 1.07994 * 120.00579 * 144.16697 * 17 16 15 19 19 C 1.37882 * 120.00016 * 324.16345 * 17 16 15 20 20 N 1.31519 * 119.99728 * 333.61244 * 19 17 16 21 21 Si 1.86798 * 120.00009 * 153.60216 * 19 17 16 22 22 H 1.48498 * 109.46834 * 90.00627 * 21 19 17 23 23 H 1.48503 * 109.47006 * 210.00291 * 21 19 17 24 24 H 1.48495 * 109.47503 * 330.00318 * 21 19 17 25 25 C 1.53000 * 117.49919 * 134.36908 * 16 15 14 26 26 C 1.53001 * 117.50070 * 65.74397 * 16 15 14 27 27 H 1.08996 * 109.46948 * 285.91754 * 1 2 3 28 28 H 1.08993 * 109.46878 * 45.91684 * 1 2 3 29 29 H 1.08999 * 109.46653 * 165.91829 * 1 2 3 30 30 H 1.08999 * 109.47378 * 183.71232 * 3 2 1 31 31 H 1.09000 * 109.47044 * 303.72181 * 3 2 1 32 32 H 1.09004 * 109.47073 * 63.71249 * 3 2 1 33 33 H 1.08998 * 109.51939 * 263.99795 * 6 4 2 34 34 H 1.09000 * 109.51628 * 24.17417 * 6 4 2 35 35 H 1.09004 * 109.37337 * 177.26336 * 7 6 4 36 36 H 1.08997 * 109.19557 * 57.35504 * 7 6 4 37 37 H 1.08989 * 109.15972 * 303.10969 * 8 7 6 38 38 H 1.08999 * 109.14940 * 183.93256 * 8 7 6 39 39 H 1.08997 * 108.49781 * 191.81519 * 9 8 7 40 40 H 1.09007 * 108.49737 * 74.36538 * 9 8 7 41 41 H 1.00901 * 111.00001 * 344.93009 * 14 12 10 42 42 H 1.08999 * 109.47141 * 294.98157 * 15 14 12 43 43 H 1.08994 * 109.47489 * 54.99295 * 15 14 12 44 44 H 0.96997 * 119.99823 * 185.04468 * 20 19 17 45 45 H 1.09005 * 117.50078 * 359.97438 * 25 16 15 46 46 H 1.09004 * 117.50044 * 145.02074 * 25 16 15 47 47 H 1.09003 * 117.50159 * 214.97612 * 26 16 15 48 48 H 1.08997 * 117.49783 * 0.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1251 1.4095 0.0000 4 6 2.1497 -0.9364 -1.0594 5 1 1.5143 -1.1044 -1.9289 6 6 3.5680 -0.4961 -1.4275 7 6 4.4257 -1.7560 -1.6673 8 6 4.5109 -2.5677 -0.3778 9 6 3.1437 -3.0730 0.0398 10 6 2.0568 -2.0329 -0.0031 11 1 1.0736 -2.5036 -0.0029 12 6 2.1480 -0.9317 1.0584 13 1 3.1694 -0.6678 1.3329 14 7 1.2827 -1.1598 2.2234 15 6 2.0770 -1.5082 3.4090 16 6 1.1562 -1.6152 4.6262 17 6 0.7657 -0.3064 5.2630 18 1 -0.2233 -0.1818 5.6784 19 6 1.6712 0.7321 5.3153 20 7 2.9619 0.4799 5.3122 21 14 1.0646 2.4973 5.3901 22 1 0.8948 2.9026 6.8086 23 1 2.0551 3.3893 4.7356 24 1 -0.2384 2.6033 4.6857 25 6 1.3412 -2.8223 5.5480 26 6 0.1192 -2.7402 4.6309 27 1 -0.3633 0.2818 0.9882 28 1 -0.3633 0.7149 -0.7382 29 1 -0.3632 -0.9968 -0.2500 30 1 3.2112 1.3454 -0.0665 31 1 1.7408 1.9662 -0.8548 32 1 1.8471 1.9213 0.9214 33 1 3.5366 0.1183 -2.3273 34 1 3.9951 0.0801 -0.6067 35 1 5.4270 -1.4580 -1.9781 36 1 3.9649 -2.3597 -2.4491 37 1 4.9173 -1.9391 0.4143 38 1 5.1743 -3.4184 -0.5341 39 1 3.2134 -3.4588 1.0568 40 1 2.8624 -3.8945 -0.6193 41 1 0.5935 -1.8704 2.0283 42 1 2.5748 -2.4639 3.2449 43 1 2.8243 -0.7347 3.5858 44 1 3.5978 1.2040 5.4226 45 1 2.1186 -3.5404 5.2870 46 1 1.1806 -2.6699 6.6153 47 1 -0.8453 -2.5337 5.0949 48 1 0.0932 -3.4043 3.7670 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926345834.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:56:21 Heat of formation + Delta-G solvation = 17.790070 kcal Electronic energy + Delta-G solvation = -23560.540140 eV Core-core repulsion = 20615.359423 eV Total energy + Delta-G solvation = -2945.180717 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.05965 -38.64414 -36.20123 -34.39808 -34.16329 -31.90475 -30.39571 -28.31393 -27.80196 -26.73278 -24.86736 -23.53929 -22.95508 -22.53217 -20.83717 -20.08888 -18.79194 -17.80617 -16.84696 -16.60877 -16.15243 -15.94576 -15.69880 -15.16558 -14.95905 -14.75200 -14.54475 -14.37659 -13.67550 -13.56096 -13.53708 -13.15171 -13.00338 -12.89033 -12.83674 -12.75831 -12.55408 -12.33206 -12.25122 -12.12911 -12.05299 -11.84561 -11.62409 -11.49281 -11.18925 -11.04256 -10.80605 -10.54552 -10.52605 -10.40114 -9.88128 -8.78973 -8.12018 -6.02270 1.37710 1.43878 1.54780 2.44885 3.00480 3.43163 3.53071 3.62135 3.76032 3.79120 4.01530 4.14177 4.20086 4.28975 4.38198 4.46247 4.51781 4.56678 4.62027 4.68741 4.69302 4.77278 4.80862 4.89119 4.91107 4.92160 4.94937 5.04160 5.06382 5.09451 5.11704 5.18882 5.19878 5.27239 5.28870 5.31821 5.36080 5.44413 5.46252 5.56051 5.57719 5.65869 5.71580 5.84122 6.05198 6.47154 6.56405 6.89091 6.91364 7.51553 8.93009 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.016813 B = 0.006513 C = 0.005649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.016279 B = 4298.081179 C = 4955.209424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.077 4.077 3 C -0.136 4.136 4 C -0.078 4.078 5 H 0.089 0.911 6 C -0.108 4.108 7 C -0.110 4.110 8 C -0.115 4.115 9 C -0.103 4.103 10 C -0.119 4.119 11 H 0.082 0.918 12 C 0.078 3.922 13 H 0.065 0.935 14 N -0.662 5.662 15 C 0.113 3.887 16 C 0.039 3.961 17 C -0.504 4.504 18 H 0.044 0.956 19 C 0.049 3.951 20 N -0.890 5.890 21 Si 0.931 3.069 22 H -0.280 1.280 23 H -0.284 1.284 24 H -0.273 1.273 25 C -0.212 4.212 26 C -0.185 4.185 27 H 0.047 0.953 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.028 0.972 33 H 0.080 0.920 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.038 0.962 38 H 0.070 0.930 39 H 0.037 0.963 40 H 0.068 0.932 41 H 0.331 0.669 42 H -0.011 1.011 43 H 0.077 0.923 44 H 0.261 0.739 45 H 0.070 0.930 46 H 0.064 0.936 47 H 0.073 0.927 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.203 -3.870 -16.581 17.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.078 4.078 3 C -0.193 4.193 4 C -0.097 4.097 5 H 0.107 0.893 6 C -0.145 4.145 7 C -0.147 4.147 8 C -0.152 4.152 9 C -0.140 4.140 10 C -0.139 4.139 11 H 0.100 0.900 12 C -0.033 4.033 13 H 0.083 0.917 14 N -0.291 5.291 15 C -0.015 4.015 16 C 0.038 3.962 17 C -0.541 4.541 18 H 0.062 0.938 19 C -0.153 4.153 20 N -0.527 5.527 21 Si 0.757 3.243 22 H -0.206 1.206 23 H -0.209 1.209 24 H -0.198 1.198 25 C -0.250 4.250 26 C -0.223 4.223 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.047 0.953 33 H 0.098 0.902 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.057 0.943 38 H 0.089 0.911 39 H 0.056 0.944 40 H 0.087 0.913 41 H 0.150 0.850 42 H 0.007 0.993 43 H 0.095 0.905 44 H 0.070 0.930 45 H 0.089 0.911 46 H 0.083 0.917 47 H 0.092 0.908 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.340 -3.103 -16.439 16.783 hybrid contribution 0.039 -0.032 0.760 0.761 sum 1.378 -3.135 -15.680 16.049 Atomic orbital electron populations 1.21382 0.92998 1.01473 1.01411 1.22228 0.95998 0.94145 0.95466 1.21791 1.00876 0.95991 1.00643 1.22158 0.97008 0.94600 0.95920 0.89281 1.21789 0.93620 0.97525 1.01550 1.21559 0.99977 0.96255 0.96903 1.21107 0.96424 0.99891 0.97825 1.20526 0.94984 0.98165 1.00360 1.22331 0.99115 0.94866 0.97625 0.89971 1.23060 0.95060 0.96629 0.88507 0.91710 1.60161 1.16051 1.49896 1.02975 1.21288 0.95170 0.96561 0.88531 1.19006 0.95499 0.87931 0.93774 1.20489 0.98211 0.96723 1.38650 0.93820 1.25341 0.94515 1.01500 0.93924 1.70088 1.01881 1.32839 1.47852 0.86000 0.78645 0.81831 0.77803 1.20573 1.20943 1.19815 1.22968 1.00046 1.05386 0.96610 1.22769 0.93324 1.04796 1.01384 0.93429 0.92160 0.92322 0.91931 0.91406 0.95325 0.90165 0.92528 0.91181 0.91057 0.94267 0.91113 0.94398 0.91329 0.85016 0.99293 0.90521 0.93008 0.91129 0.91748 0.90831 0.89570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.21 8.55 71.98 0.62 -2.59 16 2 C -0.08 -2.20 1.32 -51.43 -0.07 -2.27 16 3 C -0.14 -3.94 8.66 71.98 0.62 -3.32 16 4 C -0.08 -1.79 3.72 -10.48 -0.04 -1.83 16 5 H 0.09 1.79 8.12 -2.39 -0.02 1.77 16 6 C -0.11 -2.26 4.76 31.03 0.15 -2.11 16 7 C -0.11 -2.07 5.90 30.90 0.18 -1.88 16 8 C -0.11 -2.60 5.78 30.01 0.17 -2.43 16 9 C -0.10 -2.55 5.50 29.34 0.16 -2.38 16 10 C -0.12 -3.12 3.03 -11.72 -0.04 -3.16 16 11 H 0.08 2.12 6.91 -2.39 -0.02 2.10 16 12 C 0.08 2.62 2.84 45.32 0.13 2.74 16 13 H 0.06 2.49 7.11 -2.38 -0.02 2.47 16 14 N -0.66 -26.37 5.49 -489.50 -2.69 -29.06 16 15 C 0.11 5.31 5.24 86.30 0.45 5.77 16 16 C 0.04 1.93 1.93 -52.93 -0.10 1.83 16 17 C -0.50 -28.24 8.94 25.60 0.23 -28.01 16 18 H 0.04 2.49 7.94 -2.91 -0.02 2.47 16 19 C 0.05 2.72 4.92 84.66 0.42 3.14 16 20 N -0.89 -50.77 11.44 21.45 0.25 -50.53 16 21 Si 0.93 44.56 29.62 68.60 2.03 46.60 16 22 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 23 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 24 H -0.27 -13.07 7.11 99.48 0.71 -12.37 16 25 C -0.21 -9.89 9.88 30.60 0.30 -9.58 16 26 C -0.19 -7.96 9.60 30.60 0.29 -7.66 16 27 H 0.05 1.61 7.67 -2.39 -0.02 1.59 16 28 H 0.06 1.45 8.13 -2.39 -0.02 1.43 16 29 H 0.06 1.46 7.07 -2.39 -0.02 1.45 16 30 H 0.06 1.73 5.49 -2.39 -0.01 1.72 16 31 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.03 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.06 1.40 5.11 -2.39 -0.01 1.38 16 35 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.04 1.04 7.95 -2.39 -0.02 1.03 16 38 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 41 H 0.33 12.26 7.73 -89.69 -0.69 11.56 16 42 H -0.01 -0.50 7.95 -2.39 -0.02 -0.52 16 43 H 0.08 4.15 5.52 -2.39 -0.01 4.13 16 44 H 0.26 14.21 8.32 -92.71 -0.77 13.44 16 45 H 0.07 3.10 8.09 -2.38 -0.02 3.08 16 46 H 0.06 3.11 8.14 -2.39 -0.02 3.09 16 47 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 48 H 0.09 3.25 8.05 -2.39 -0.02 3.23 16 Total: -1.00 -58.65 357.02 3.29 -55.36 By element: Atomic # 1 Polarization: 31.16 SS G_CDS: 0.22 Total: 31.38 kcal Atomic # 6 Polarization: -57.23 SS G_CDS: 3.48 Total: -53.75 kcal Atomic # 7 Polarization: -77.15 SS G_CDS: -2.44 Total: -79.59 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.60 kcal Total: -58.65 3.29 -55.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926345834.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.151 kcal (2) G-P(sol) polarization free energy of solvation -58.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds