Wall clock time and date at job start Thu Apr 9 2020 13:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46632 * 110.99795 * 2 1 4 4 C 1.52892 * 108.31147 * 188.11123 * 3 2 1 5 5 C 1.52977 * 109.63521 * 295.28939 * 4 3 2 6 6 H 1.09002 * 111.11916 * 284.86259 * 5 4 3 7 7 C 1.55157 * 107.06324 * 162.37385 * 5 4 3 8 8 N 1.47780 * 104.99174 * 272.63195 * 7 5 4 9 9 C 1.46894 * 111.00046 * 207.66978 * 8 7 5 10 10 C 1.53001 * 109.47189 * 185.37066 * 9 8 7 11 11 H 1.09003 * 109.47081 * 305.25508 * 10 9 8 12 12 C 1.47198 * 109.47222 * 65.25140 * 10 9 8 13 13 N 6.38261 * 137.68435 * 229.51164 * 2 1 3 14 14 C 1.53003 * 109.47380 * 185.25512 * 10 9 8 15 15 C 1.50701 * 109.47095 * 174.99652 * 14 10 9 16 16 H 1.08003 * 120.00031 * 0.02562 * 15 14 10 17 17 C 1.37878 * 119.99639 * 179.97438 * 15 14 10 18 18 N 1.31508 * 120.00080 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99476 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47634 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46913 * 120.00613 * 19 17 15 22 22 H 1.48509 * 109.47097 * 240.00162 * 19 17 15 23 23 C 1.47627 * 107.60177 * 329.30930 * 8 7 5 24 24 C 1.52205 * 111.78643 * 49.71353 * 5 4 3 25 25 H 1.08997 * 105.37296 * 207.35200 * 24 5 4 26 26 C 1.45353 * 111.00317 * 125.61185 * 2 1 3 27 27 H 1.08994 * 109.47278 * 63.95340 * 1 2 3 28 28 H 1.09002 * 109.47123 * 183.95596 * 1 2 3 29 29 H 1.09004 * 109.46780 * 303.95289 * 1 2 3 30 30 H 1.08998 * 109.69782 * 68.40759 * 3 2 1 31 31 H 1.09003 * 109.72960 * 307.83783 * 3 2 1 32 32 H 1.09001 * 109.43393 * 55.32941 * 4 3 2 33 33 H 1.08996 * 109.43724 * 175.24330 * 4 3 2 34 34 H 1.09007 * 110.33287 * 153.76687 * 7 5 4 35 35 H 1.08999 * 110.35805 * 31.52114 * 7 5 4 36 36 H 1.09005 * 109.47113 * 305.36867 * 9 8 7 37 37 H 1.08994 * 109.47388 * 65.36919 * 9 8 7 38 38 H 1.09000 * 109.46391 * 294.99718 * 14 10 9 39 39 H 1.09001 * 109.47077 * 54.99397 * 14 10 9 40 40 H 0.97006 * 119.99998 * 179.97438 * 18 17 15 41 41 H 1.08999 * 109.92395 * 258.79506 * 23 8 7 42 42 H 1.08997 * 109.93087 * 137.45903 * 23 8 7 43 43 H 1.09006 * 108.22297 * 309.46988 * 26 2 1 44 44 H 1.09005 * 108.21951 * 66.19649 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9945 1.3689 0.0000 4 6 3.5081 1.3025 -0.2048 5 6 4.1580 0.6002 0.9888 6 1 4.1898 1.2545 1.8599 7 6 5.5776 0.1620 0.5415 8 7 5.3905 -1.1677 -0.0757 9 6 6.6087 -1.9798 0.0442 10 6 6.4237 -3.2925 -0.7197 11 1 5.5247 -3.7961 -0.3642 12 6 6.2910 -3.0089 -2.1579 13 7 6.1886 -2.7899 -3.2679 14 6 7.6385 -4.1933 -0.4874 15 6 7.4027 -5.5322 -1.1377 16 1 6.4790 -5.7216 -1.6644 17 6 8.3666 -6.5150 -1.0612 18 7 9.4916 -6.2843 -0.4203 19 14 8.0740 -8.1749 -1.8667 20 1 6.7400 -8.1804 -2.5189 21 1 9.1243 -8.4219 -2.8869 22 1 8.1255 -9.2418 -0.8349 23 6 4.2520 -1.8184 0.6024 24 6 3.4667 -0.7161 1.3147 25 1 3.6322 -0.8732 2.3805 26 6 1.9900 -0.7901 1.1032 27 1 -0.3633 0.4512 -0.9232 28 1 -0.3633 -1.0252 0.0709 29 1 -0.3633 0.5740 0.8525 30 1 1.7735 1.8473 0.9542 31 1 1.5387 1.9380 -0.8103 32 1 3.7267 0.7460 -1.1162 33 1 3.9070 2.3131 -0.2924 34 1 6.2408 0.0894 1.4035 35 1 5.9792 0.8651 -0.1882 36 1 7.4532 -1.4320 -0.3741 37 1 6.8000 -2.1950 1.0954 38 1 8.5235 -3.7289 -0.9223 39 1 7.7893 -4.3310 0.5833 40 1 10.1696 -6.9759 -0.3661 41 1 4.6178 -2.5432 1.3297 42 1 3.6158 -2.3129 -0.1315 43 1 1.4977 -0.4630 2.0191 44 1 1.7220 -1.8328 0.9320 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931430222.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:56:32 Heat of formation + Delta-G solvation = 4.992120 kcal Electronic energy + Delta-G solvation = -21937.371249 eV Core-core repulsion = 18888.095227 eV Total energy + Delta-G solvation = -3049.276021 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.25308 -38.81243 -37.41712 -35.63672 -34.48583 -33.07266 -32.37466 -29.42804 -28.22897 -27.15722 -25.13162 -23.96821 -23.62832 -22.78558 -21.84825 -19.66863 -18.54658 -18.04469 -17.15386 -16.71506 -16.40260 -16.30129 -15.85622 -15.61370 -15.19354 -14.88574 -14.40499 -14.16843 -13.95367 -13.82039 -13.77063 -13.65147 -13.50492 -13.11764 -13.02511 -13.00122 -12.76523 -12.57861 -12.45433 -12.36478 -12.17738 -11.93663 -11.78518 -11.59830 -11.34619 -11.23956 -11.12179 -10.96122 -10.55596 -9.19137 -9.08024 -8.19663 -6.27758 1.38851 1.42034 1.52737 2.07407 2.15031 2.41669 3.02430 3.10176 3.16059 3.36127 3.61586 3.64506 3.76872 4.17214 4.18622 4.23731 4.35370 4.42906 4.47588 4.56627 4.60820 4.70267 4.71951 4.72561 4.78104 4.83082 4.86892 4.92824 4.98201 5.01176 5.03913 5.06245 5.18077 5.21559 5.35819 5.46064 5.56493 5.61630 5.78953 6.11357 6.12786 6.24571 6.25522 6.30074 6.83098 6.93922 7.40843 8.91504 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.026276 B = 0.003792 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.352209 B = 7381.949037 C = 7668.377114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.567 5.567 3 C 0.062 3.938 4 C -0.106 4.106 5 C -0.078 4.078 6 H 0.100 0.900 7 C 0.045 3.955 8 N -0.540 5.540 9 C 0.068 3.932 10 C 0.023 3.977 11 H 0.111 0.889 12 C 0.266 3.734 13 N -0.514 5.514 14 C 0.039 3.961 15 C -0.538 4.538 16 H 0.052 0.948 17 C 0.013 3.987 18 N -0.923 5.923 19 Si 0.948 3.052 20 H -0.270 1.270 21 H -0.284 1.284 22 H -0.271 1.271 23 C 0.049 3.951 24 C -0.090 4.090 25 H 0.076 0.924 26 C 0.081 3.919 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.032 0.968 30 H 0.040 0.960 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.054 0.946 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.002 0.998 39 H 0.035 0.965 40 H 0.264 0.736 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.034 0.966 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.192 15.933 9.306 23.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.292 5.292 3 C -0.066 4.066 4 C -0.143 4.143 5 C -0.097 4.097 6 H 0.118 0.882 7 C -0.082 4.082 8 N -0.264 5.264 9 C -0.061 4.061 10 C 0.001 3.999 11 H 0.128 0.872 12 C -0.050 4.050 13 N -0.192 5.192 14 C 0.000 4.000 15 C -0.577 4.577 16 H 0.070 0.930 17 C -0.186 4.186 18 N -0.563 5.563 19 Si 0.774 3.226 20 H -0.195 1.195 21 H -0.211 1.211 22 H -0.196 1.196 23 C -0.079 4.079 24 C -0.109 4.109 25 H 0.094 0.906 26 C -0.047 4.047 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.020 0.980 39 H 0.054 0.946 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.052 0.948 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.137 16.007 6.741 23.039 hybrid contribution 0.259 -1.081 1.266 1.685 sum -14.878 14.926 8.007 22.544 Atomic orbital electron populations 1.22341 0.86009 1.02185 1.01193 1.60927 1.08387 1.14088 1.45812 1.21975 0.95551 0.88531 1.00499 1.21551 0.94248 1.00467 0.98076 1.21705 0.93650 0.95783 0.98586 0.88205 1.23183 0.96984 0.90233 0.97785 1.63833 1.04280 1.03356 1.54948 1.22214 0.92946 0.91724 0.99219 1.19160 1.02479 0.97073 0.81176 0.87169 1.29335 0.90435 0.89931 0.95261 1.80963 1.11702 1.12372 1.14152 1.18996 0.91128 0.92304 0.97590 1.21564 1.02618 0.99133 1.34341 0.93009 1.25695 0.94944 1.02161 0.95835 1.70034 1.07715 1.35164 1.43369 0.85648 0.78113 0.80340 0.78506 1.19492 1.21056 1.19649 1.22743 0.92309 0.96360 0.96492 1.20608 0.94275 0.95215 1.00804 0.90602 1.20804 0.93717 0.98509 0.91660 0.91063 0.91342 0.94934 0.94200 0.90525 0.92798 0.90374 0.92744 0.90395 0.90650 0.91147 0.97994 0.94630 0.92680 0.92358 0.91980 0.94761 0.91244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 9.54 127.69 1.22 1.69 16 2 N -0.57 -11.17 4.88 -934.76 -4.56 -15.73 16 3 C 0.06 1.06 5.49 86.32 0.47 1.53 16 4 C -0.11 -1.97 5.22 30.55 0.16 -1.81 16 5 C -0.08 -1.37 3.41 -10.32 -0.04 -1.40 16 6 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 7 C 0.05 0.95 5.94 86.87 0.52 1.47 16 8 N -0.54 -14.45 4.92 -887.51 -4.37 -18.82 16 9 C 0.07 2.02 3.97 86.30 0.34 2.36 16 10 C 0.02 0.86 2.16 -12.60 -0.03 0.84 16 11 H 0.11 3.91 7.14 -2.39 -0.02 3.90 16 12 C 0.27 11.59 13.67 89.44 1.22 12.82 16 13 N -0.51 -24.38 18.54 20.01 0.37 -24.01 16 14 C 0.04 1.82 4.42 29.85 0.13 1.95 16 15 C -0.54 -29.07 8.60 25.60 0.22 -28.85 16 16 H 0.05 2.80 7.59 -2.91 -0.02 2.78 16 17 C 0.01 0.70 5.46 84.66 0.46 1.16 16 18 N -0.92 -53.30 13.29 21.45 0.28 -53.02 16 19 Si 0.95 43.93 29.54 68.60 2.03 45.95 16 20 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 21 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 23 C 0.05 1.17 5.26 86.15 0.45 1.62 16 24 C -0.09 -1.68 2.55 -12.24 -0.03 -1.71 16 25 H 0.08 1.22 8.06 -2.39 -0.02 1.20 16 26 C 0.08 1.50 4.93 85.43 0.42 1.92 16 27 H 0.07 1.03 8.14 -2.39 -0.02 1.02 16 28 H 0.07 1.02 8.08 -2.39 -0.02 1.00 16 29 H 0.03 0.43 8.14 -2.38 -0.02 0.41 16 30 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.08 1.23 8.11 -2.39 -0.02 1.21 16 32 H 0.05 1.37 7.94 -2.39 -0.02 1.35 16 33 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.05 1.02 7.89 -2.38 -0.02 1.00 16 35 H 0.08 1.67 7.84 -2.39 -0.02 1.65 16 36 H 0.07 2.29 8.13 -2.38 -0.02 2.27 16 37 H 0.07 1.86 7.96 -2.39 -0.02 1.84 16 38 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 39 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.26 14.42 8.31 -92.70 -0.77 13.65 16 41 H 0.06 1.33 7.46 -2.39 -0.02 1.32 16 42 H 0.06 1.72 7.71 -2.39 -0.02 1.71 16 43 H 0.03 0.55 8.03 -2.38 -0.02 0.53 16 44 H 0.07 1.35 7.72 -2.38 -0.02 1.33 16 Total: -1.00 -64.68 348.04 0.23 -64.45 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: 0.95 Total: 7.60 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: 5.53 Total: -6.43 kcal Atomic # 7 Polarization: -103.30 SS G_CDS: -8.27 Total: -111.57 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -64.68 0.23 -64.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931430222.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.438 kcal (2) G-P(sol) polarization free energy of solvation -64.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds