Wall clock time and date at job start Thu Apr 9 2020 13:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 120.00050 * 2 1 4 4 H 1.48499 * 109.47009 * 269.99470 * 3 2 1 5 5 H 1.48497 * 109.47089 * 29.99781 * 3 2 1 6 6 H 1.48497 * 109.46915 * 149.99639 * 3 2 1 7 7 C 1.38810 * 119.99648 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99746 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00350 * 0.02562 * 7 2 1 10 10 C 1.47631 * 126.59429 * 180.02562 * 9 7 2 11 11 C 1.54382 * 105.76686 * 178.90840 * 10 9 7 12 12 N 1.48821 * 103.35831 * 337.54601 * 11 10 9 13 13 C 1.47508 * 126.47649 * 0.02562 * 9 7 2 14 14 H 0.96995 * 119.99549 * 0.02562 * 1 2 3 15 15 H 1.08998 * 110.17346 * 59.84042 * 10 9 7 16 16 H 1.08993 * 110.25672 * 298.02102 * 10 9 7 17 17 H 1.09003 * 110.64616 * 219.07854 * 11 10 9 18 18 H 1.09003 * 110.77962 * 96.08259 * 11 10 9 19 19 H 1.00896 * 111.00306 * 155.84034 * 12 11 10 20 20 H 1.09002 * 110.26244 * 85.49488 * 13 9 7 21 21 H 1.09000 * 110.26113 * 323.54499 * 13 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 1.9120 -3.7429 0.0016 11 6 0.7154 -4.7180 0.0294 12 7 -0.3871 -3.8933 0.5944 13 6 -0.1401 -2.5545 -0.0005 14 1 -0.4849 0.8400 -0.0004 15 1 2.5323 -3.8833 0.8868 16 1 2.5034 -3.8988 -0.9005 17 1 0.9283 -5.5695 0.6758 18 1 0.4669 -5.0541 -0.9773 19 1 -1.2875 -4.2526 0.3145 20 1 -0.5235 -2.5177 -1.0202 21 1 -0.6084 -1.7796 0.6064 RHF calculation, no. of doubly occupied orbitals= 26 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104623444.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:55:49 Heat of formation + Delta-G solvation = 38.570905 kcal Electronic energy + Delta-G solvation = -7387.825728 eV Core-core repulsion = 5878.873457 eV Total energy + Delta-G solvation = -1508.952271 eV No. of doubly occupied orbitals = 26 Molecular weight (most abundant/longest-lived isotopes) = 142.080 amu Computer time = 0.05 seconds Orbital eigenvalues (eV) -37.32756 -32.82971 -30.08235 -27.86771 -24.83593 -21.00666 -20.26999 -17.08641 -15.17569 -14.94939 -14.03256 -12.70033 -12.51236 -12.28333 -11.40755 -11.14729 -11.01515 -10.78442 -10.34556 -9.96165 -9.71923 -8.79766 -7.77730 -6.84544 -5.71346 -3.09355 3.40820 3.44867 3.47952 4.46754 5.22705 5.48495 5.56301 5.78535 5.96409 6.23372 6.54907 6.79100 6.84759 7.23523 7.68319 7.86845 8.16734 8.31885 9.19877 9.78902 10.48089 11.37697 Molecular weight = 142.08amu Principal moments of inertia in cm(-1) A = 0.134139 B = 0.021991 C = 0.019364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 208.688385 B = 1272.961518 C = 1445.653331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.014 4.014 3 Si 0.922 3.078 4 H -0.289 1.289 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.219 4.219 8 H 0.081 0.919 9 N -0.604 5.604 10 C 0.128 3.872 11 C 0.024 3.976 12 N -0.683 5.683 13 C 0.300 3.700 14 H 0.255 0.745 15 H 0.031 0.969 16 H 0.025 0.975 17 H 0.071 0.929 18 H 0.032 0.968 19 H 0.325 0.675 20 H -0.011 1.011 21 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.737 -4.663 -0.640 4.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.209 4.209 3 Si 0.752 3.248 4 H -0.216 1.216 5 H -0.215 1.215 6 H -0.206 1.206 7 C -0.347 4.347 8 H 0.099 0.901 9 N -0.331 5.331 10 C 0.002 3.998 11 C -0.106 4.106 12 N -0.314 5.314 13 C 0.086 3.914 14 H 0.065 0.935 15 H 0.049 0.951 16 H 0.043 0.957 17 H 0.089 0.911 18 H 0.050 0.950 19 H 0.139 0.861 20 H 0.007 0.993 21 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.988 -4.295 0.063 4.407 hybrid contribution 0.164 0.627 -1.083 1.262 sum 1.152 -3.668 -1.021 3.978 Atomic orbital electron populations 1.69688 1.05024 1.25134 1.57638 1.24836 0.95828 0.97953 1.02325 0.85951 0.78463 0.82826 0.77541 1.21581 1.21537 1.20586 1.19074 0.90534 0.81949 1.43161 0.90075 1.44658 1.01607 1.00114 1.86756 1.21579 0.94243 0.86032 0.97964 1.23102 0.93951 0.96712 0.96853 1.64503 1.03947 1.05279 1.57653 1.22681 0.85549 0.87913 0.95270 0.93478 0.95131 0.95747 0.91104 0.95001 0.86094 0.99317 0.86057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.82 10.17 55.49 0.56 -27.26 14 2 C -0.01 -0.41 5.49 -17.43 -0.10 -0.51 14 3 Si 0.92 22.51 29.55 -169.99 -5.02 17.48 14 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 14 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 14 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 14 7 C -0.22 -6.39 10.34 -15.06 -0.16 -6.55 14 8 H 0.08 2.26 7.83 -52.48 -0.41 1.85 14 9 N -0.60 -16.76 3.45 -173.22 -0.60 -17.36 14 10 C 0.13 2.92 7.50 -2.70 -0.02 2.90 14 11 C 0.02 0.47 7.59 -2.03 -0.02 0.45 14 12 N -0.68 -14.81 7.76 -113.14 -0.88 -15.69 14 13 C 0.30 7.90 6.61 -60.36 -0.40 7.50 14 14 H 0.25 7.34 8.31 -40.82 -0.34 7.00 14 15 H 0.03 0.69 8.14 -51.93 -0.42 0.27 14 16 H 0.02 0.53 8.14 -51.93 -0.42 0.11 14 17 H 0.07 1.20 8.14 -51.93 -0.42 0.77 14 18 H 0.03 0.57 8.14 -51.93 -0.42 0.15 14 19 H 0.33 5.97 8.92 -39.29 -0.35 5.62 14 20 H -0.01 -0.29 8.14 -51.93 -0.42 -0.71 14 21 H 0.12 3.56 5.91 -51.93 -0.31 3.26 14 LS Contribution 181.47 15.07 2.73 2.73 Total: -1.00 -31.28 181.47 -6.20 -37.48 By element: Atomic # 1 Polarization: 1.14 SS G_CDS: -2.32 Total: -1.17 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -0.69 Total: 3.79 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: -0.91 Total: -60.31 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 2.73 Total: 2.73 kcal Total: -31.28 -6.20 -37.48 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104623444.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.050 kcal (2) G-P(sol) polarization free energy of solvation -31.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.05 seconds