Wall clock time and date at job start Thu Apr 9 2020 13:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46907 * 113.08645 * 2 1 4 4 C 1.53669 * 113.82625 * 228.06146 * 2 1 3 5 5 C 1.51413 * 87.41006 * 220.14467 * 4 2 1 6 6 C 1.37871 * 136.32053 * 206.00195 * 5 4 2 7 7 N 1.31516 * 119.99826 * 359.72996 * 6 5 4 8 8 Si 1.86800 * 120.00406 * 180.02562 * 6 5 4 9 9 H 1.48501 * 109.47364 * 179.72558 * 8 6 5 10 10 H 1.48508 * 109.46883 * 299.72681 * 8 6 5 11 11 H 1.48497 * 109.46870 * 59.72491 * 8 6 5 12 12 C 1.51407 * 87.36595 * 26.26450 * 5 4 2 13 13 H 1.09004 * 109.47005 * 191.93875 * 1 2 3 14 14 H 1.09001 * 109.47331 * 311.93761 * 1 2 3 15 15 H 1.08994 * 109.47657 * 71.94086 * 1 2 3 16 16 H 1.00896 * 110.99857 * 48.06322 * 3 2 1 17 17 H 1.00895 * 110.99632 * 172.01735 * 3 2 1 18 18 H 1.08999 * 113.55768 * 105.52056 * 4 2 1 19 19 H 1.08992 * 113.56123 * 334.78088 * 4 2 1 20 20 H 0.97000 * 120.00236 * 0.27947 * 7 6 5 21 21 H 1.08996 * 113.56466 * 88.36399 * 12 5 4 22 22 H 1.08994 * 113.56122 * 219.10659 * 12 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.1060 1.3514 0.0000 4 6 2.1507 -0.9395 -1.0457 5 6 3.1808 -1.3109 0.0001 6 6 4.4777 -1.7787 0.0002 7 7 5.0945 -2.0070 -1.1388 8 14 5.3562 -2.0961 1.6179 9 1 6.7273 -2.5977 1.3466 10 1 5.4358 -0.8325 2.3941 11 1 4.6036 -3.1103 2.3991 12 6 2.1485 -0.9458 1.0458 13 1 -0.3633 -1.0055 0.2126 14 1 -0.3634 0.6868 0.7644 15 1 -0.3634 0.3185 -0.9770 16 1 1.6687 1.9309 0.7007 17 1 3.1059 1.3182 0.1308 18 1 2.5713 -0.4175 -1.9052 19 1 1.4999 -1.7665 -1.3292 20 1 4.6383 -1.8424 -1.9788 21 1 1.4970 -1.7745 1.3230 22 1 2.5671 -0.4290 1.9094 RHF calculation, no. of doubly occupied orbitals= 26 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104641234.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:55:50 Heat of formation + Delta-G solvation = -14.895075 kcal Electronic energy + Delta-G solvation = -7279.587083 eV Core-core repulsion = 5833.742264 eV Total energy + Delta-G solvation = -1445.844819 eV No. of doubly occupied orbitals = 26 Molecular weight (most abundant/longest-lived isotopes) = 141.085 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -39.60102 -34.30321 -31.43279 -29.42687 -26.22525 -24.11590 -20.14130 -18.29333 -16.55191 -16.10648 -15.56121 -14.95833 -14.40739 -13.63925 -13.14416 -12.81351 -12.70779 -12.49205 -11.98862 -11.68166 -11.11871 -10.61720 -10.18260 -9.36074 -8.73520 -6.28803 1.49235 1.56513 1.77067 2.50181 3.04653 3.77408 4.08342 4.41211 4.54215 4.92419 4.96294 5.02881 5.14585 5.20242 5.22688 5.47869 5.68505 6.01847 6.41259 6.62072 6.88447 7.53184 8.66809 Molecular weight = 141.08amu Principal moments of inertia in cm(-1) A = 0.090474 B = 0.025162 C = 0.023043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 309.407675 B = 1112.541977 C = 1214.830050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.107 3.893 3 N -0.821 5.821 4 C -0.034 4.034 5 C -0.612 4.612 6 C 0.000 4.000 7 N -0.932 5.932 8 Si 1.116 2.884 9 H -0.283 1.283 10 H -0.264 1.264 11 H -0.271 1.271 12 C -0.066 4.066 13 H 0.057 0.943 14 H 0.069 0.931 15 H 0.053 0.947 16 H 0.342 0.658 17 H 0.340 0.660 18 H -0.006 1.006 19 H 0.019 0.981 20 H 0.252 0.748 21 H 0.032 0.968 22 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.160 3.364 6.189 8.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.013 3.987 3 N -0.349 5.349 4 C -0.071 4.071 5 C -0.631 4.631 6 C -0.197 4.197 7 N -0.569 5.569 8 Si 0.937 3.063 9 H -0.209 1.209 10 H -0.189 1.189 11 H -0.196 1.196 12 C -0.106 4.106 13 H 0.076 0.924 14 H 0.088 0.912 15 H 0.072 0.928 16 H 0.156 0.844 17 H 0.153 0.847 18 H 0.012 0.988 19 H 0.037 0.963 20 H 0.061 0.939 21 H 0.051 0.949 22 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -4.036 2.917 6.071 7.852 hybrid contribution -1.021 0.009 -0.320 1.070 sum -5.057 2.927 5.751 8.198 Atomic orbital electron populations 1.21597 0.92889 1.01664 1.01793 1.21560 0.92880 0.87560 0.96655 1.58644 1.09516 1.11003 1.55783 1.21048 0.96922 0.94872 0.94294 1.22761 0.98561 1.47181 0.94641 1.26600 0.94731 0.92190 1.06193 1.70947 1.40257 1.47332 0.98315 0.82924 0.75051 0.77928 0.70419 1.20894 1.18920 1.19605 1.21893 0.97329 0.96899 0.94515 0.92417 0.91223 0.92760 0.84450 0.84744 0.98789 0.96303 0.93938 0.94940 0.95671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.19 9.43 71.98 0.68 -3.51 14 2 C 0.11 4.61 1.82 4.07 0.01 4.62 14 3 N -0.82 -32.56 9.47 -149.40 -1.41 -33.98 14 4 C -0.03 -1.77 7.12 30.16 0.21 -1.56 14 5 C -0.61 -33.89 6.18 -16.09 -0.10 -33.98 14 6 C 0.00 -0.02 5.47 84.65 0.46 0.45 14 7 N -0.93 -58.10 13.70 21.45 0.29 -57.81 14 8 Si 1.12 50.04 29.55 68.60 2.03 52.07 14 9 H -0.28 -12.73 7.11 99.48 0.71 -12.03 14 10 H -0.26 -10.83 7.11 99.48 0.71 -10.12 14 11 H -0.27 -11.37 7.11 99.48 0.71 -10.66 14 12 C -0.07 -3.10 6.67 30.26 0.20 -2.90 14 13 H 0.06 1.93 7.92 -2.38 -0.02 1.91 14 14 H 0.07 2.01 8.13 -2.39 -0.02 1.99 14 15 H 0.05 1.81 8.14 -2.39 -0.02 1.79 14 16 H 0.34 11.04 8.98 -89.70 -0.81 10.23 14 17 H 0.34 14.64 8.43 -89.70 -0.76 13.88 14 18 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 14 19 H 0.02 0.99 8.10 -2.39 -0.02 0.97 14 20 H 0.25 16.17 8.55 -92.71 -0.79 15.38 14 21 H 0.03 1.48 7.95 -2.39 -0.02 1.46 14 22 H 0.02 1.10 8.10 -2.39 -0.02 1.09 14 Total: -1.00 -63.12 193.17 2.00 -61.12 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -0.37 Total: 15.49 kcal Atomic # 6 Polarization: -38.36 SS G_CDS: 1.47 Total: -36.89 kcal Atomic # 7 Polarization: -90.66 SS G_CDS: -1.12 Total: -91.78 kcal Atomic # 14 Polarization: 50.04 SS G_CDS: 2.03 Total: 52.07 kcal Total: -63.12 2.00 -61.12 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104641234.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.221 kcal (2) G-P(sol) polarization free energy of solvation -63.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds