Wall clock time and date at job start Thu Apr 9 2020 13:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 120.00364 * 2 1 4 4 H 1.48497 * 109.47420 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46991 * 300.00090 * 3 2 1 6 6 H 1.48509 * 109.47030 * 59.99905 * 3 2 1 7 7 C 1.37881 * 119.99677 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99740 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99831 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46728 * 179.97438 * 9 7 2 11 11 C 1.53786 * 113.61503 * 85.86370 * 10 9 7 12 12 C 1.54049 * 86.98426 * 140.01654 * 11 10 9 13 13 C 1.53781 * 113.61337 * 183.47164 * 10 9 7 14 14 H 0.96997 * 119.99610 * 0.02562 * 1 2 3 15 15 H 1.09000 * 109.47223 * 60.00109 * 9 7 2 16 16 H 1.08997 * 109.47305 * 299.99769 * 9 7 2 17 17 H 1.09002 * 112.85017 * 314.66753 * 10 9 7 18 18 H 1.08992 * 113.61675 * 254.61398 * 11 10 9 19 19 H 1.09000 * 113.60973 * 25.51686 * 11 10 9 20 20 H 1.09005 * 113.62125 * 220.02158 * 12 11 10 21 21 H 1.09003 * 113.61268 * 89.11946 * 12 11 10 22 22 H 1.08999 * 113.61567 * 334.48261 * 13 10 9 23 23 H 1.09000 * 113.61379 * 105.30384 * 13 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 2.7227 -4.0644 1.4059 12 6 2.6241 -5.5269 0.9322 13 6 1.5764 -5.0443 -0.0848 14 1 -0.4849 0.8401 -0.0004 15 1 0.6246 -2.5571 -0.8897 16 1 0.6239 -2.5567 0.8903 17 1 3.0569 -3.5250 -0.7138 18 1 3.7402 -3.7440 1.6297 19 1 2.0152 -3.8127 2.1961 20 1 2.2216 -6.2039 1.6858 21 1 3.5395 -5.8996 0.4726 22 1 0.5561 -5.0601 0.2986 23 1 1.6679 -5.5139 -1.0642 RHF calculation, no. of doubly occupied orbitals= 26 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107217025.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:55:52 Heat of formation + Delta-G solvation = -2.573609 kcal Electronic energy + Delta-G solvation = -6938.000916 eV Core-core repulsion = 5558.116307 eV Total energy + Delta-G solvation = -1379.884609 eV No. of doubly occupied orbitals = 26 Molecular weight (most abundant/longest-lived isotopes) = 140.090 amu Computer time = 0.05 seconds Orbital eigenvalues (eV) -37.92771 -32.80452 -28.92954 -24.89806 -24.26455 -21.12338 -18.48295 -16.21262 -14.80374 -14.47883 -13.56448 -12.38544 -12.27317 -11.70924 -11.21707 -11.01279 -10.83754 -10.40911 -10.21713 -9.72667 -9.43946 -8.97564 -8.71387 -8.27913 -5.93905 -3.95281 3.34257 3.41462 3.46081 4.50912 5.37022 5.42408 5.45699 5.53439 5.82676 6.16267 6.44601 6.46697 6.50168 6.68408 6.97216 7.08916 7.29139 7.75889 7.91903 8.07047 8.51773 9.12006 9.68113 11.17524 Molecular weight = 140.09amu Principal moments of inertia in cm(-1) A = 0.129096 B = 0.017051 C = 0.015884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 216.841455 B = 1641.719353 C = 1762.337254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.054 3.946 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.028 3.972 10 C -0.098 4.098 11 C -0.129 4.129 12 C -0.147 4.147 13 C -0.143 4.143 14 H 0.259 0.741 15 H 0.016 0.984 16 H 0.017 0.983 17 H 0.073 0.927 18 H 0.054 0.946 19 H 0.075 0.925 20 H 0.054 0.946 21 H 0.069 0.931 22 H 0.074 0.926 23 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.710 -5.862 1.017 7.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.552 4.552 8 H 0.073 0.927 9 C -0.009 4.009 10 C -0.117 4.117 11 C -0.166 4.166 12 C -0.184 4.184 13 C -0.181 4.181 14 H 0.068 0.932 15 H 0.034 0.966 16 H 0.035 0.965 17 H 0.092 0.908 18 H 0.073 0.927 19 H 0.094 0.906 20 H 0.073 0.927 21 H 0.088 0.912 22 H 0.093 0.907 23 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.565 -5.746 1.018 6.838 hybrid contribution 0.408 0.989 0.001 1.070 sum 3.974 -4.757 1.019 6.282 Atomic orbital electron populations 1.69981 1.06045 1.26332 1.51435 1.25042 0.94834 0.99207 0.95578 0.86562 0.80140 0.83957 0.77503 1.19778 1.21085 1.21091 1.21317 0.93037 0.91091 1.49706 0.92730 1.19100 0.93532 0.91193 0.97047 1.22576 0.99009 0.94478 0.95591 1.22905 1.00702 0.94453 0.98588 1.22903 0.99184 0.97198 0.99132 1.22982 0.98340 0.98655 0.98095 0.93165 0.96615 0.96485 0.90849 0.92684 0.90614 0.92689 0.91212 0.90747 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.66 13.29 55.43 0.74 -26.92 14 2 C 0.05 1.58 5.46 -17.82 -0.10 1.49 14 3 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 14 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 14 5 H -0.28 -6.98 7.11 56.52 0.40 -6.58 14 6 H -0.28 -6.99 7.11 56.52 0.40 -6.59 14 7 C -0.51 -14.95 9.10 -34.44 -0.31 -15.26 14 8 H 0.05 1.55 7.74 -52.49 -0.41 1.15 14 9 C 0.03 0.76 4.80 -27.88 -0.13 0.62 14 10 C -0.10 -2.13 3.58 -89.80 -0.32 -2.45 14 11 C -0.13 -2.48 7.65 -25.77 -0.20 -2.68 14 12 C -0.15 -2.39 8.09 -25.78 -0.21 -2.60 14 13 C -0.14 -2.61 7.64 -25.92 -0.20 -2.81 14 14 H 0.26 7.48 8.31 -40.82 -0.34 7.14 14 15 H 0.02 0.44 8.14 -51.93 -0.42 0.02 14 16 H 0.02 0.48 7.88 -51.93 -0.41 0.07 14 17 H 0.07 1.59 8.13 -51.93 -0.42 1.17 14 18 H 0.05 1.01 8.14 -51.93 -0.42 0.59 14 19 H 0.08 1.50 7.92 -51.93 -0.41 1.09 14 20 H 0.05 0.80 8.14 -51.93 -0.42 0.38 14 21 H 0.07 1.03 8.14 -51.93 -0.42 0.61 14 22 H 0.07 1.36 8.10 -51.93 -0.42 0.94 14 23 H 0.05 0.90 8.14 -51.93 -0.42 0.47 14 LS Contribution 199.26 15.07 3.00 3.00 Total: -1.00 -30.21 199.26 -6.07 -36.28 By element: Atomic # 1 Polarization: -2.45 SS G_CDS: -3.32 Total: -5.77 kcal Atomic # 6 Polarization: -22.22 SS G_CDS: -1.47 Total: -23.69 kcal Atomic # 7 Polarization: -27.66 SS G_CDS: 0.74 Total: -26.92 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 3.00 Total: 3.00 kcal Total: -30.21 -6.07 -36.28 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107217025.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.710 kcal (2) G-P(sol) polarization free energy of solvation -30.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.05 seconds