Wall clock time and date at job start Thu Apr 9 2020 13:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 120.00364 * 2 1 4 4 H 1.48497 * 109.47420 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46991 * 300.00090 * 3 2 1 6 6 H 1.48509 * 109.47030 * 59.99905 * 3 2 1 7 7 C 1.37881 * 119.99677 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99740 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99831 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46728 * 179.97438 * 9 7 2 11 11 C 1.53786 * 113.61503 * 85.86370 * 10 9 7 12 12 C 1.54049 * 86.98426 * 140.01654 * 11 10 9 13 13 C 1.53781 * 113.61337 * 183.47164 * 10 9 7 14 14 H 0.96997 * 119.99610 * 0.02562 * 1 2 3 15 15 H 1.09000 * 109.47223 * 60.00109 * 9 7 2 16 16 H 1.08997 * 109.47305 * 299.99769 * 9 7 2 17 17 H 1.09002 * 112.85017 * 314.66753 * 10 9 7 18 18 H 1.08992 * 113.61675 * 254.61398 * 11 10 9 19 19 H 1.09000 * 113.60973 * 25.51686 * 11 10 9 20 20 H 1.09005 * 113.62125 * 220.02158 * 12 11 10 21 21 H 1.09003 * 113.61268 * 89.11946 * 12 11 10 22 22 H 1.08999 * 113.61567 * 334.48261 * 13 10 9 23 23 H 1.09000 * 113.61379 * 105.30384 * 13 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 2.7227 -4.0644 1.4059 12 6 2.6241 -5.5269 0.9322 13 6 1.5764 -5.0443 -0.0848 14 1 -0.4849 0.8401 -0.0004 15 1 0.6246 -2.5571 -0.8897 16 1 0.6239 -2.5567 0.8903 17 1 3.0569 -3.5250 -0.7138 18 1 3.7402 -3.7440 1.6297 19 1 2.0152 -3.8127 2.1961 20 1 2.2216 -6.2039 1.6858 21 1 3.5395 -5.8996 0.4726 22 1 0.5561 -5.0601 0.2986 23 1 1.6679 -5.5139 -1.0642 RHF calculation, no. of doubly occupied orbitals= 26 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107217025.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:55:52 Heat of formation + Delta-G solvation = -20.640211 kcal Electronic energy + Delta-G solvation = -6938.784343 eV Core-core repulsion = 5558.116307 eV Total energy + Delta-G solvation = -1380.668035 eV No. of doubly occupied orbitals = 26 Molecular weight (most abundant/longest-lived isotopes) = 140.090 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -39.50566 -35.01762 -30.98944 -26.52008 -26.14227 -22.96048 -20.08788 -18.44469 -16.67426 -16.18357 -15.20107 -14.44938 -14.15617 -13.22896 -13.10959 -12.85961 -12.73869 -12.26206 -12.01410 -11.42796 -11.20459 -10.88208 -10.58412 -10.46900 -8.19344 -6.30220 1.38917 1.39433 1.53082 2.41043 3.12906 3.93880 3.99512 4.05437 4.22608 4.84437 4.90130 4.99249 5.09706 5.15526 5.23867 5.39756 5.45606 5.66023 5.78360 5.92221 6.28574 6.86873 7.38710 8.92730 Molecular weight = 140.09amu Principal moments of inertia in cm(-1) A = 0.129096 B = 0.017051 C = 0.015884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 216.841455 B = 1641.719353 C = 1762.337254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.005 4.005 3 Si 0.967 3.033 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.536 4.536 8 H 0.058 0.942 9 C 0.032 3.968 10 C -0.112 4.112 11 C -0.132 4.132 12 C -0.122 4.122 13 C -0.140 4.140 14 H 0.263 0.737 15 H -0.015 1.015 16 H -0.010 1.010 17 H 0.073 0.927 18 H 0.062 0.938 19 H 0.062 0.938 20 H 0.078 0.922 21 H 0.093 0.907 22 H 0.067 0.933 23 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.097 -6.248 1.179 8.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.202 4.202 3 Si 0.791 3.209 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.574 4.574 8 H 0.076 0.924 9 C -0.005 4.005 10 C -0.131 4.131 11 C -0.170 4.170 12 C -0.159 4.159 13 C -0.177 4.177 14 H 0.072 0.928 15 H 0.004 0.996 16 H 0.009 0.991 17 H 0.092 0.908 18 H 0.081 0.919 19 H 0.081 0.919 20 H 0.096 0.904 21 H 0.111 0.889 22 H 0.086 0.914 23 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.960 -6.148 1.181 7.987 hybrid contribution -0.065 1.109 -0.062 1.113 sum 4.894 -5.039 1.119 7.113 Atomic orbital electron populations 1.70115 1.07870 1.27643 1.52146 1.26029 0.95794 1.03470 0.94884 0.85376 0.79051 0.78681 0.77799 1.18580 1.20317 1.20331 1.21722 0.93420 0.92384 1.49826 0.92394 1.18995 0.93995 0.93230 0.94248 1.22574 0.98368 0.94323 0.97788 1.22892 1.00575 0.97045 0.96482 1.22808 0.99289 0.95357 0.98480 1.22947 0.98519 0.96274 0.99968 0.92824 0.99620 0.99137 0.90837 0.91942 0.91915 0.90360 0.88875 0.91442 0.91063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.76 13.29 21.45 0.28 -58.47 14 2 C 0.00 -0.28 5.46 84.65 0.46 0.18 14 3 Si 0.97 45.39 29.54 68.60 2.03 47.42 14 4 H -0.26 -11.71 7.11 99.48 0.71 -11.01 14 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 14 6 H -0.28 -12.66 7.11 99.48 0.71 -11.95 14 7 C -0.54 -31.61 9.10 25.60 0.23 -31.38 14 8 H 0.06 3.29 7.74 -2.91 -0.02 3.27 14 9 C 0.03 1.79 4.80 29.85 0.14 1.93 14 10 C -0.11 -4.82 3.58 -10.26 -0.04 -4.86 14 11 C -0.13 -4.90 7.65 31.21 0.24 -4.67 14 12 C -0.12 -3.56 8.09 31.21 0.25 -3.30 14 13 C -0.14 -4.85 7.64 31.12 0.24 -4.61 14 14 H 0.26 15.38 8.31 -92.71 -0.77 14.61 14 15 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 14 16 H -0.01 -0.58 7.88 -2.39 -0.02 -0.60 14 17 H 0.07 3.13 8.13 -2.39 -0.02 3.11 14 18 H 0.06 2.19 8.14 -2.39 -0.02 2.17 14 19 H 0.06 2.46 7.92 -2.39 -0.02 2.44 14 20 H 0.08 1.97 8.14 -2.38 -0.02 1.95 14 21 H 0.09 2.33 8.14 -2.39 -0.02 2.31 14 22 H 0.07 2.42 8.10 -2.39 -0.02 2.40 14 23 H 0.07 2.21 8.14 -2.39 -0.02 2.19 14 Total: -1.00 -64.70 199.26 5.00 -59.70 By element: Atomic # 1 Polarization: -3.10 SS G_CDS: 1.15 Total: -1.95 kcal Atomic # 6 Polarization: -48.24 SS G_CDS: 1.53 Total: -46.70 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: 0.28 Total: -58.47 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -64.70 5.00 -59.70 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107217025.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.064 kcal (2) G-P(sol) polarization free energy of solvation -64.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds