Wall clock time and date at job start Thu Apr 9 2020 13:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30682 * 1 3 3 Si 1.86794 * 119.99895 * 2 1 4 4 H 1.48497 * 109.47330 * 274.97750 * 3 2 1 5 5 H 1.48505 * 109.47470 * 34.97993 * 3 2 1 6 6 H 1.48505 * 109.46967 * 154.97700 * 3 2 1 7 7 C 1.40051 * 119.99795 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99887 * 186.15360 * 7 2 1 9 9 C 1.46370 * 120.00032 * 6.15856 * 7 2 1 10 10 O 1.21697 * 120.00163 * 353.91919 * 9 7 2 11 11 N 1.34771 * 120.00032 * 173.92313 * 9 7 2 12 12 C 1.47069 * 136.05994 * 359.61918 * 11 9 7 13 13 C 1.53494 * 87.98606 * 153.14198 * 12 11 9 14 14 N 1.46896 * 114.38491 * 139.67451 * 13 12 11 15 15 C 1.47071 * 136.05912 * 179.97438 * 11 9 7 16 16 H 0.97001 * 119.99803 * 0.02562 * 1 2 3 17 17 H 1.08991 * 113.46981 * 267.92755 * 12 11 9 18 18 H 1.09009 * 113.46322 * 38.36065 * 12 11 9 19 19 H 1.08998 * 114.20658 * 272.48055 * 13 12 11 20 20 H 1.00893 * 111.00741 * 86.31210 * 14 13 12 21 21 H 1.00897 * 111.00177 * 210.27328 * 14 13 12 22 22 H 1.09005 * 113.46726 * 321.64156 * 15 11 9 23 23 H 1.09006 * 113.46762 * 92.08066 * 15 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.3831 2.1072 -1.3947 5 1 1.4948 2.6200 0.8027 6 1 3.5870 1.4120 0.5922 7 6 2.0070 -1.2129 0.0005 8 1 3.0823 -1.2156 0.1008 9 6 1.2815 -2.4769 -0.1349 10 8 0.0645 -2.4828 -0.1366 11 7 1.9611 -3.6342 -0.2576 12 6 3.3764 -4.0312 -0.3053 13 6 2.9557 -5.3980 0.2524 14 7 3.6518 -6.5407 -0.3538 15 6 1.6139 -5.0553 -0.4089 16 1 -0.4850 0.8401 -0.0004 17 1 3.7795 -4.0805 -1.3167 18 1 4.0102 -3.4614 0.3743 19 1 2.9184 -5.4443 1.3407 20 1 4.5254 -6.7232 0.1169 21 1 3.0647 -7.3613 -0.3575 22 1 0.7491 -5.3562 0.1826 23 1 1.5472 -5.3776 -1.4481 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257923788.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:56:34 Heat of formation + Delta-G solvation = -28.857949 kcal Electronic energy + Delta-G solvation = -9669.954537 eV Core-core repulsion = 7711.169999 eV Total energy + Delta-G solvation = -1958.784538 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 170.080 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.71402 -38.04770 -34.70949 -33.59590 -29.61213 -27.43496 -26.65245 -22.34547 -20.50972 -18.68377 -17.67344 -17.15023 -16.66312 -16.18440 -15.43890 -14.71407 -14.02291 -13.63967 -13.33267 -13.25412 -12.96446 -12.75861 -12.60739 -12.01291 -11.38465 -10.98126 -10.01120 -9.71727 -9.22484 -8.36554 -6.91752 1.37667 1.39533 1.56204 2.19106 2.37974 2.62261 3.38447 3.44633 3.75721 4.13779 4.50867 4.58843 4.66705 4.73306 5.06272 5.18142 5.26718 5.91588 6.23010 6.39108 6.67966 6.80064 7.54419 8.36295 8.60410 Molecular weight = 170.08amu Principal moments of inertia in cm(-1) A = 0.085653 B = 0.012887 C = 0.011392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 326.821199 B = 2172.193384 C = 2457.207438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.025 3.975 3 Si 1.005 2.995 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.247 1.247 7 C -0.564 4.564 8 H 0.085 0.915 9 C 0.562 3.438 10 O -0.635 6.635 11 N -0.685 5.685 12 C 0.120 3.880 13 C 0.072 3.928 14 N -0.830 5.830 15 C 0.101 3.899 16 H 0.277 0.723 17 H 0.080 0.920 18 H 0.068 0.932 19 H 0.079 0.921 20 H 0.358 0.642 21 H 0.355 0.645 22 H 0.049 0.951 23 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.731 -6.746 0.775 11.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.189 4.189 3 Si 0.824 3.176 4 H -0.186 1.186 5 H -0.193 1.193 6 H -0.170 1.170 7 C -0.600 4.600 8 H 0.103 0.897 9 C 0.370 3.630 10 O -0.522 6.522 11 N -0.424 5.424 12 C -0.004 4.004 13 C -0.040 4.040 14 N -0.364 5.364 15 C -0.023 4.023 16 H 0.087 0.913 17 H 0.098 0.902 18 H 0.086 0.914 19 H 0.097 0.903 20 H 0.173 0.827 21 H 0.170 0.830 22 H 0.068 0.932 23 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.800 -6.027 0.151 10.667 hybrid contribution -0.271 0.146 0.811 0.867 sum 8.529 -5.880 0.962 10.404 Atomic orbital electron populations 1.70199 1.09676 1.29270 1.36044 1.27102 0.95630 1.05157 0.91056 0.84906 0.78840 0.74534 0.79368 1.18597 1.19285 1.17026 1.21298 0.95007 0.89593 1.54113 0.89702 1.18378 0.86027 0.82464 0.76083 1.90547 1.16156 1.86528 1.58986 1.49622 1.09515 1.05573 1.77706 1.22829 0.84082 0.92626 1.00902 1.22868 0.93243 0.91443 0.96474 1.58569 1.09153 1.08083 1.60624 1.22852 0.97264 0.82010 1.00160 0.91280 0.90243 0.91375 0.90347 0.82750 0.82979 0.93243 0.90612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.81 11.85 21.84 0.26 -51.55 14 2 C 0.03 1.47 5.49 85.30 0.47 1.93 14 3 Si 1.01 41.78 29.56 68.60 2.03 43.81 14 4 H -0.26 -10.36 7.11 99.48 0.71 -9.65 14 5 H -0.27 -10.61 7.11 99.48 0.71 -9.90 14 6 H -0.25 -9.49 7.11 99.48 0.71 -8.78 14 7 C -0.56 -33.60 9.37 24.83 0.23 -33.37 14 8 H 0.08 4.59 7.78 -2.91 -0.02 4.57 14 9 C 0.56 35.19 7.99 86.36 0.69 35.88 14 10 O -0.63 -45.48 15.82 -4.34 -0.07 -45.55 14 11 N -0.68 -33.81 3.69 -863.56 -3.19 -36.99 14 12 C 0.12 4.37 8.15 83.17 0.68 5.05 14 13 C 0.07 2.11 5.31 45.38 0.24 2.35 14 14 N -0.83 -17.28 9.62 -168.20 -1.62 -18.90 14 15 C 0.10 3.93 8.42 83.17 0.70 4.63 14 16 H 0.28 15.64 8.29 -92.71 -0.77 14.87 14 17 H 0.08 2.76 8.14 -2.39 -0.02 2.75 14 18 H 0.07 2.39 8.14 -2.38 -0.02 2.37 14 19 H 0.08 2.21 8.14 -2.39 -0.02 2.19 14 20 H 0.36 5.63 9.08 -89.70 -0.81 4.81 14 21 H 0.36 6.07 9.07 -89.70 -0.81 5.25 14 22 H 0.05 1.98 8.14 -2.38 -0.02 1.96 14 23 H 0.08 2.80 8.14 -2.38 -0.02 2.78 14 Total: -1.00 -79.52 211.53 0.03 -79.49 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -0.40 Total: 13.22 kcal Atomic # 6 Polarization: 13.46 SS G_CDS: 3.01 Total: 16.47 kcal Atomic # 7 Polarization: -102.89 SS G_CDS: -4.55 Total: -107.44 kcal Atomic # 8 Polarization: -45.48 SS G_CDS: -0.07 Total: -45.55 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -79.52 0.03 -79.49 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257923788.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.631 kcal (2) G-P(sol) polarization free energy of solvation -79.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds