Wall clock time and date at job start Thu Apr 9 2020 13:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.60410 * 2 1 4 4 C 1.54100 * 110.54826 * 237.22059 * 2 1 3 5 5 N 1.47055 * 103.86143 * 241.40351 * 4 2 1 6 6 C 1.37191 * 125.41090 * 180.02562 * 5 4 2 7 7 H 1.08000 * 120.00211 * 174.22696 * 6 5 4 8 8 C 1.38884 * 119.99586 * 354.22600 * 6 5 4 9 9 N 1.31471 * 120.00222 * 6.94886 * 8 6 5 10 10 Si 1.86801 * 119.99649 * 186.94582 * 8 6 5 11 11 H 1.48509 * 109.47107 * 90.00160 * 10 8 6 12 12 H 1.48499 * 109.47164 * 209.99867 * 10 8 6 13 13 H 1.48503 * 109.47593 * 330.00529 * 10 8 6 14 14 C 1.33951 * 109.18008 * 0.02562 * 5 4 2 15 15 O 1.21583 * 123.03859 * 179.97438 * 14 5 4 16 16 N 1.33947 * 113.91656 * 359.97438 * 14 5 4 17 17 H 1.08999 * 109.46947 * 298.67791 * 1 2 3 18 18 H 1.09001 * 109.47504 * 58.67294 * 1 2 3 19 19 H 1.08998 * 109.46973 * 178.67622 * 1 2 3 20 20 H 1.08997 * 110.54957 * 0.02562 * 4 2 1 21 21 H 1.09005 * 110.54864 * 122.67005 * 4 2 1 22 22 H 0.97002 * 119.99646 * 179.97438 * 9 8 6 23 23 H 0.96991 * 125.41262 * 180.25925 * 16 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9136 1.0203 0.0000 4 6 2.0709 -0.7812 -1.2132 5 7 2.8344 -1.8839 -0.6102 6 6 3.5085 -2.8567 -1.3040 7 1 4.1190 -3.5731 -0.7744 8 6 3.4059 -2.9201 -2.6876 9 7 2.7766 -1.9709 -3.3444 10 14 4.1622 -4.3543 -3.6154 11 1 3.1628 -5.4457 -3.7397 12 1 4.5756 -3.9052 -4.9692 13 1 5.3493 -4.8522 -2.8750 14 6 2.7671 -1.7877 0.7242 15 8 3.3116 -2.5750 1.4738 16 7 2.0458 -0.7457 1.1578 17 1 -0.3633 0.4932 0.9016 18 1 -0.3634 0.5343 -0.8778 19 1 -0.3633 -1.0274 -0.0237 20 1 1.2495 -1.1688 -1.8158 21 1 2.7211 -0.1481 -1.8170 22 1 2.7053 -2.0151 -4.3108 23 1 1.8915 -0.5170 2.0876 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259306486.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:56:38 Heat of formation + Delta-G solvation = -38.166095 kcal Electronic energy + Delta-G solvation = -10048.096537 eV Core-core repulsion = 8088.908367 eV Total energy + Delta-G solvation = -1959.188169 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 170.080 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.65574 -37.26457 -35.92479 -33.05174 -31.41195 -28.03179 -26.04830 -22.37882 -22.01173 -19.31973 -17.70885 -17.23898 -16.81481 -15.94570 -15.20195 -14.91516 -14.47446 -13.70033 -13.46435 -13.26791 -12.83353 -12.59734 -12.49079 -12.10363 -11.85710 -11.06937 -10.90969 -10.13652 -9.63174 -8.32208 -5.86967 1.42278 1.43382 1.55618 2.17717 2.34085 2.56136 3.19208 3.64657 3.80873 4.26222 4.33154 4.82384 4.94293 4.98552 5.18351 5.41312 5.42894 5.49588 6.19224 6.43908 6.72108 7.26543 7.46290 8.22365 8.76338 Molecular weight = 170.08amu Principal moments of inertia in cm(-1) A = 0.063970 B = 0.017679 C = 0.014447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.600398 B = 1583.395812 C = 1937.676660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.112 3.888 3 H 0.106 0.894 4 C 0.137 3.863 5 N -0.490 5.490 6 C -0.324 4.324 7 H 0.076 0.924 8 C -0.008 4.008 9 N -0.908 5.908 10 Si 0.999 3.001 11 H -0.272 1.272 12 H -0.269 1.269 13 H -0.274 1.274 14 C 0.635 3.365 15 O -0.679 6.679 16 N -0.736 5.736 17 H 0.083 0.917 18 H 0.087 0.913 19 H 0.037 0.963 20 H 0.070 0.930 21 H 0.061 0.939 22 H 0.274 0.726 23 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.039 5.773 0.250 7.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.006 3.994 3 H 0.124 0.876 4 C 0.013 3.987 5 N -0.214 5.214 6 C -0.451 4.451 7 H 0.094 0.906 8 C -0.208 4.208 9 N -0.548 5.548 10 Si 0.822 3.178 11 H -0.198 1.198 12 H -0.193 1.193 13 H -0.199 1.199 14 C 0.336 3.664 15 O -0.568 6.568 16 N -0.399 5.399 17 H 0.102 0.898 18 H 0.106 0.894 19 H 0.057 0.943 20 H 0.088 0.912 21 H 0.080 0.920 22 H 0.083 0.917 23 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -4.746 5.344 0.246 7.151 hybrid contribution 0.371 -0.591 -0.094 0.704 sum -4.375 4.753 0.152 6.461 Atomic orbital electron populations 1.22062 0.92281 1.01859 1.04060 1.22316 0.96393 0.96530 0.84142 0.87575 1.22202 0.95474 0.87327 0.93686 1.42991 1.48385 1.26722 1.03291 1.19441 1.27096 1.08431 0.90142 0.90572 1.25997 0.97805 1.00697 0.96307 1.69981 1.43326 1.32623 1.08892 0.84852 0.78211 0.77411 0.77319 1.19753 1.19323 1.19877 1.16285 0.82982 0.83650 0.83532 1.90686 1.57495 1.49247 1.59331 1.44911 1.56417 1.29430 1.09142 0.89835 0.89405 0.94330 0.91224 0.92022 0.91667 0.73056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.78 9.41 71.98 0.68 -3.10 14 2 C 0.11 3.75 4.38 45.26 0.20 3.95 14 3 H 0.11 2.93 8.14 -2.39 -0.02 2.91 14 4 C 0.14 6.21 5.30 86.65 0.46 6.67 14 5 N -0.49 -27.20 3.07 -651.04 -2.00 -29.20 14 6 C -0.32 -19.27 9.92 84.01 0.83 -18.44 14 7 H 0.08 4.78 7.68 -2.91 -0.02 4.76 14 8 C -0.01 -0.44 5.48 84.90 0.47 0.02 14 9 N -0.91 -48.36 10.39 21.65 0.23 -48.13 14 10 Si 1.00 43.30 29.56 68.60 2.03 45.33 14 11 H -0.27 -11.48 7.11 99.48 0.71 -10.78 14 12 H -0.27 -10.91 7.11 99.48 0.71 -10.20 14 13 H -0.27 -11.94 7.11 99.48 0.71 -11.24 14 14 C 0.63 34.12 8.55 179.57 1.54 35.66 14 15 O -0.68 -42.04 17.53 -3.98 -0.07 -42.11 14 16 N -0.74 -29.05 6.03 -456.77 -2.75 -31.81 14 17 H 0.08 1.70 8.14 -2.39 -0.02 1.68 14 18 H 0.09 1.95 8.14 -2.39 -0.02 1.93 14 19 H 0.04 1.18 8.14 -2.39 -0.02 1.16 14 20 H 0.07 3.30 6.97 -2.39 -0.02 3.28 14 21 H 0.06 2.92 7.63 -2.38 -0.02 2.90 14 22 H 0.27 13.58 8.31 -92.71 -0.77 12.81 14 23 H 0.43 13.96 8.96 -92.72 -0.83 13.13 14 Total: -1.00 -70.79 203.07 1.98 -68.81 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 0.38 Total: 12.34 kcal Atomic # 6 Polarization: 20.60 SS G_CDS: 4.17 Total: 24.77 kcal Atomic # 7 Polarization: -104.61 SS G_CDS: -4.53 Total: -109.14 kcal Atomic # 8 Polarization: -42.04 SS G_CDS: -0.07 Total: -42.11 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -70.79 1.98 -68.81 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259306486.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.644 kcal (2) G-P(sol) polarization free energy of solvation -70.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds