Wall clock time and date at job start Thu Apr 9 2020 13:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 110.49549 * 2 1 4 4 C 1.54106 * 110.55152 * 122.70313 * 2 1 3 5 5 N 1.47049 * 103.86621 * 118.73174 * 4 2 1 6 6 C 1.37191 * 125.40978 * 179.97438 * 5 4 2 7 7 H 1.08001 * 119.99803 * 185.75521 * 6 5 4 8 8 C 1.38873 * 120.00203 * 5.48887 * 6 5 4 9 9 N 1.31477 * 119.99695 * 353.36412 * 8 6 5 10 10 Si 1.86804 * 120.00290 * 173.37295 * 8 6 5 11 11 H 1.48492 * 109.46859 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47223 * 119.99528 * 10 8 6 13 13 H 1.48494 * 109.46895 * 239.99550 * 10 8 6 14 14 C 1.33945 * 109.17864 * 0.26856 * 5 4 2 15 15 O 1.21587 * 123.04126 * 179.73191 * 14 5 4 16 16 N 1.33950 * 113.91574 * 359.52737 * 14 5 4 17 17 H 1.09006 * 109.47051 * 297.30072 * 1 2 3 18 18 H 1.09002 * 109.47539 * 57.29517 * 1 2 3 19 19 H 1.09000 * 109.47544 * 177.30257 * 1 2 3 20 20 H 1.09001 * 110.54415 * 0.13921 * 4 2 1 21 21 H 1.08995 * 110.54948 * 237.33372 * 4 2 1 22 22 H 0.97008 * 119.99945 * 180.02562 * 9 8 6 23 23 H 0.96998 * 125.40914 * 180.20999 * 16 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9116 1.0210 0.0000 4 6 2.0709 -0.7796 1.2142 5 7 2.8372 -1.8812 0.6128 6 6 3.5123 -2.8522 1.3081 7 1 4.1245 -3.5679 0.7795 8 6 3.4130 -2.9115 2.6920 9 7 2.7804 -1.9630 3.3468 10 14 4.1783 -4.3388 3.6231 11 1 4.8273 -5.2658 2.6617 12 1 5.1939 -3.8211 4.5748 13 1 3.1215 -5.0640 4.3729 14 6 2.7767 -1.7821 -0.7216 15 8 3.3290 -2.5650 -1.4702 16 7 2.0490 -0.7451 -1.1567 17 1 -0.3633 0.4714 0.9132 18 1 -0.3634 0.5553 -0.8647 19 1 -0.3634 -1.0265 -0.0484 20 1 1.2495 -1.1688 1.8158 21 1 2.7210 -0.1457 1.8172 22 1 2.7113 -2.0043 4.3136 23 1 1.8927 -0.5191 -2.0869 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259306489.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:56:39 Heat of formation + Delta-G solvation = -38.225699 kcal Electronic energy + Delta-G solvation = -10047.707468 eV Core-core repulsion = 8088.516714 eV Total energy + Delta-G solvation = -1959.190754 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 170.080 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.65665 -37.26502 -35.92567 -33.05114 -31.41583 -28.03267 -26.04867 -22.37813 -22.01281 -19.32073 -17.70913 -17.24491 -16.81180 -15.94041 -15.20557 -14.91914 -14.47528 -13.70792 -13.46456 -13.26429 -12.83981 -12.59022 -12.49544 -12.10166 -11.85012 -11.07028 -10.91229 -10.13726 -9.63236 -8.32292 -5.87058 1.41101 1.43079 1.57349 2.17581 2.33924 2.56082 3.19118 3.64389 3.80997 4.26144 4.33192 4.82571 4.94153 4.98729 5.18591 5.41371 5.42891 5.49467 6.19254 6.43775 6.72007 7.26492 7.46261 8.22230 8.76405 Molecular weight = 170.08amu Principal moments of inertia in cm(-1) A = 0.063961 B = 0.017676 C = 0.014438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.661745 B = 1583.679635 C = 1938.819195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.111 3.889 3 H 0.106 0.894 4 C 0.137 3.863 5 N -0.490 5.490 6 C -0.323 4.323 7 H 0.076 0.924 8 C -0.009 4.009 9 N -0.908 5.908 10 Si 0.999 3.001 11 H -0.275 1.275 12 H -0.270 1.270 13 H -0.270 1.270 14 C 0.635 3.365 15 O -0.679 6.679 16 N -0.736 5.736 17 H 0.086 0.914 18 H 0.084 0.916 19 H 0.038 0.962 20 H 0.070 0.930 21 H 0.061 0.939 22 H 0.273 0.727 23 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.070 5.748 -0.250 7.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.006 3.994 3 H 0.124 0.876 4 C 0.013 3.987 5 N -0.214 5.214 6 C -0.450 4.450 7 H 0.094 0.906 8 C -0.208 4.208 9 N -0.549 5.549 10 Si 0.822 3.178 11 H -0.200 1.200 12 H -0.195 1.195 13 H -0.195 1.195 14 C 0.336 3.664 15 O -0.568 6.568 16 N -0.399 5.399 17 H 0.105 0.895 18 H 0.103 0.897 19 H 0.057 0.943 20 H 0.088 0.912 21 H 0.080 0.920 22 H 0.083 0.917 23 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -4.778 5.315 -0.248 7.151 hybrid contribution 0.385 -0.572 0.100 0.697 sum -4.392 4.743 -0.148 6.466 Atomic orbital electron populations 1.22062 0.92253 1.01876 1.04077 1.22308 0.96398 0.96522 0.84162 0.87632 1.22209 0.95423 0.87349 0.93697 1.43002 1.48281 1.26836 1.03291 1.19473 1.26975 1.08460 0.90102 0.90589 1.25996 0.97838 1.00682 0.96316 1.69990 1.43275 1.32700 1.08899 0.84789 0.77979 0.77367 0.77639 1.20014 1.19484 1.19474 1.16286 0.83002 0.83623 0.83531 1.90688 1.57197 1.49464 1.59415 1.44906 1.55969 1.29869 1.09140 0.89543 0.89726 0.94256 0.91191 0.92037 0.91680 0.73057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.77 9.41 71.98 0.68 -3.10 14 2 C 0.11 3.75 4.38 45.26 0.20 3.95 14 3 H 0.11 2.92 8.14 -2.39 -0.02 2.90 14 4 C 0.14 6.22 5.30 86.65 0.46 6.68 14 5 N -0.49 -27.21 3.07 -651.07 -2.00 -29.21 14 6 C -0.32 -19.22 9.92 84.01 0.83 -18.38 14 7 H 0.08 4.78 7.67 -2.91 -0.02 4.76 14 8 C -0.01 -0.46 5.48 84.90 0.47 0.00 14 9 N -0.91 -48.35 10.39 21.65 0.22 -48.12 14 10 Si 1.00 43.30 29.56 68.60 2.03 45.33 14 11 H -0.28 -12.13 7.11 99.48 0.71 -11.43 14 12 H -0.27 -11.10 7.11 99.48 0.71 -10.40 14 13 H -0.27 -11.14 7.11 99.48 0.71 -10.43 14 14 C 0.63 34.13 8.55 179.57 1.54 35.67 14 15 O -0.68 -42.07 17.53 -3.99 -0.07 -42.14 14 16 N -0.74 -29.06 6.04 -456.78 -2.76 -31.82 14 17 H 0.09 1.95 8.14 -2.38 -0.02 1.93 14 18 H 0.08 1.70 8.14 -2.39 -0.02 1.68 14 19 H 0.04 1.19 8.14 -2.39 -0.02 1.17 14 20 H 0.07 3.31 6.98 -2.39 -0.02 3.30 14 21 H 0.06 2.92 7.63 -2.39 -0.02 2.90 14 22 H 0.27 13.53 8.31 -92.70 -0.77 12.76 14 23 H 0.43 13.97 8.96 -92.71 -0.83 13.14 14 Total: -1.00 -70.84 203.07 1.98 -68.87 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 0.38 Total: 12.27 kcal Atomic # 6 Polarization: 20.65 SS G_CDS: 4.17 Total: 24.82 kcal Atomic # 7 Polarization: -104.62 SS G_CDS: -4.53 Total: -109.15 kcal Atomic # 8 Polarization: -42.07 SS G_CDS: -0.07 Total: -42.14 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -70.84 1.98 -68.87 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259306489.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.641 kcal (2) G-P(sol) polarization free energy of solvation -70.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds