Wall clock time and date at job start Thu Apr 9 2020 13:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 120.00016 * 2 1 4 4 H 1.48497 * 109.47276 * 270.00248 * 3 2 1 5 5 H 1.48498 * 109.46729 * 30.00121 * 3 2 1 6 6 H 1.48496 * 109.47004 * 149.99859 * 3 2 1 7 7 C 1.37876 * 120.00340 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99907 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00359 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47639 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.80758 * 305.59057 * 10 9 7 12 12 O 1.43728 * 109.82141 * 66.44737 * 10 9 7 13 13 C 1.44468 * 106.48051 * 145.66318 * 12 10 9 14 14 C 1.54964 * 103.23691 * 320.73616 * 13 12 10 15 15 C 1.51647 * 109.88761 * 184.69410 * 10 9 7 16 16 O 1.20762 * 127.57877 * 58.65959 * 15 10 9 17 17 H 0.96999 * 120.00136 * 0.02562 * 1 2 3 18 18 H 1.09000 * 109.47345 * 59.99431 * 9 7 2 19 19 H 1.09004 * 109.46811 * 299.99505 * 9 7 2 20 20 H 1.09002 * 110.69416 * 79.22331 * 13 12 10 21 21 H 1.08997 * 110.69685 * 202.25673 * 13 12 10 22 22 H 1.09005 * 110.83426 * 155.01094 * 14 13 12 23 23 H 1.09001 * 110.83577 * 278.59542 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0217 -2.6364 -0.0001 11 1 3.5818 -3.1839 0.8336 12 8 3.6753 -3.2758 -1.2398 13 6 4.7567 -4.1822 -1.5497 14 6 6.0183 -3.3854 -1.1314 15 6 5.5335 -2.6490 0.1172 16 8 6.2074 -2.1799 1.0028 17 1 -0.4850 0.8400 -0.0004 18 1 3.8746 -0.6807 0.8905 19 1 3.8752 -0.6796 -0.8895 20 1 4.6696 -5.0993 -0.9671 21 1 4.7784 -4.4056 -2.6163 22 1 6.8411 -4.0595 -0.8929 23 1 6.3072 -2.6798 -1.9104 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259755343.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:56:55 Heat of formation + Delta-G solvation = -107.921433 kcal Electronic energy + Delta-G solvation = -9746.533227 eV Core-core repulsion = 7752.027489 eV Total energy + Delta-G solvation = -1994.505739 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 170.073 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.24046 -38.73329 -35.30066 -32.75042 -31.80539 -28.02344 -24.48456 -22.93738 -20.98839 -19.03860 -17.55477 -17.26603 -16.71176 -16.16084 -15.66323 -15.01094 -14.65411 -14.37418 -13.80966 -13.67534 -12.99549 -12.71990 -12.28691 -12.05861 -11.91967 -11.59940 -10.81214 -10.76257 -10.32473 -8.31012 -6.35468 0.69571 1.33473 1.35677 1.46939 2.33342 2.88978 2.95218 3.09706 3.50056 3.92007 4.14401 4.32578 4.48966 4.72799 4.83349 4.91256 4.98222 5.19373 5.49333 5.87161 6.24217 6.29435 6.70244 7.27010 8.85729 Molecular weight = 170.07amu Principal moments of inertia in cm(-1) A = 0.062643 B = 0.015053 C = 0.013176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.871544 B = 1859.589267 C = 2124.577868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.008 3.992 3 Si 0.946 3.054 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.253 1.253 7 C -0.523 4.523 8 H 0.037 0.963 9 C -0.004 4.004 10 C 0.034 3.966 11 H 0.085 0.915 12 O -0.371 6.371 13 C 0.034 3.966 14 C -0.198 4.198 15 C 0.352 3.648 16 O -0.462 6.462 17 H 0.268 0.732 18 H 0.033 0.967 19 H 0.028 0.972 20 H 0.081 0.919 21 H 0.128 0.872 22 H 0.137 0.863 23 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.550 -5.812 -3.549 14.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.189 4.189 3 Si 0.769 3.231 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.177 1.177 7 C -0.561 4.561 8 H 0.055 0.945 9 C -0.041 4.041 10 C -0.025 4.025 11 H 0.102 0.898 12 O -0.290 6.290 13 C -0.041 4.041 14 C -0.235 4.235 15 C 0.228 3.772 16 O -0.336 6.336 17 H 0.077 0.923 18 H 0.051 0.949 19 H 0.046 0.954 20 H 0.099 0.901 21 H 0.146 0.854 22 H 0.155 0.845 23 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 12.561 -5.429 -3.207 14.055 hybrid contribution -0.252 0.641 0.204 0.718 sum 12.309 -4.788 -3.003 13.544 Atomic orbital electron populations 1.70046 1.08124 1.28236 1.52312 1.25942 0.95664 1.03247 0.94082 0.85716 0.79332 0.78572 0.79438 1.18717 1.20397 1.17694 1.21201 0.90876 0.93496 1.50545 0.94493 1.19547 0.95648 0.91502 0.97438 1.23054 0.94000 0.96589 0.88834 0.89786 1.89217 1.43325 1.57792 1.38712 1.23885 0.83491 0.92661 1.04105 1.23683 1.01121 1.01886 0.96831 1.26238 0.91397 0.73584 0.85988 1.90375 1.65292 1.39724 1.38232 0.92307 0.94934 0.95378 0.90106 0.85438 0.84475 0.85294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.38 13.96 21.45 0.30 -60.08 14 2 C 0.01 0.47 5.47 84.65 0.46 0.93 14 3 Si 0.95 45.26 27.47 68.60 1.88 47.15 14 4 H -0.26 -11.93 7.11 99.48 0.71 -11.23 14 5 H -0.28 -12.91 7.11 99.48 0.71 -12.21 14 6 H -0.25 -11.50 6.54 99.48 0.65 -10.85 14 7 C -0.52 -31.25 9.48 25.60 0.24 -31.00 14 8 H 0.04 2.43 7.99 -2.91 -0.02 2.41 14 9 C 0.00 -0.19 3.77 29.85 0.11 -0.08 14 10 C 0.03 1.39 3.27 30.15 0.10 1.49 14 11 H 0.08 3.50 8.14 -2.39 -0.02 3.48 14 12 O -0.37 -14.39 11.02 -148.98 -1.64 -16.04 14 13 C 0.03 0.81 7.74 72.65 0.56 1.37 14 14 C -0.20 -4.31 7.08 31.22 0.22 -4.09 14 15 C 0.35 11.76 7.40 30.10 0.22 11.98 14 16 O -0.46 -17.78 17.99 -1.45 -0.03 -17.80 14 17 H 0.27 15.84 8.31 -92.71 -0.77 15.07 14 18 H 0.03 1.61 7.20 -2.39 -0.02 1.60 14 19 H 0.03 1.34 7.57 -2.39 -0.02 1.32 14 20 H 0.08 1.61 8.14 -2.39 -0.02 1.59 14 21 H 0.13 2.26 8.14 -2.39 -0.02 2.24 14 22 H 0.14 2.05 8.14 -2.38 -0.02 2.03 14 23 H 0.13 2.47 8.14 -2.39 -0.02 2.45 14 Total: -1.00 -71.84 207.19 3.58 -68.26 By element: Atomic # 1 Polarization: -3.24 SS G_CDS: 1.14 Total: -2.10 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: 1.92 Total: -19.39 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: 0.30 Total: -60.08 kcal Atomic # 8 Polarization: -32.17 SS G_CDS: -1.67 Total: -33.84 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.88 Total: 47.15 kcal Total: -71.84 3.58 -68.26 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259755343.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.660 kcal (2) G-P(sol) polarization free energy of solvation -71.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds