Wall clock time and date at job start Thu Apr 9 2020 13:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 120.00211 * 2 1 4 4 H 1.48501 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47180 * 300.00244 * 3 2 1 6 6 H 1.48499 * 109.46858 * 60.00405 * 3 2 1 7 7 C 1.37876 * 120.00021 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50710 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.46934 * 179.97438 * 9 7 2 11 11 N 1.31164 * 121.09529 * 90.00216 * 10 9 7 12 12 C 1.30923 * 117.01951 * 179.97438 * 11 10 9 13 13 S 1.72314 * 105.02928 * 0.02562 * 12 11 10 14 14 N 1.30236 * 121.10199 * 269.97458 * 10 9 7 15 15 H 0.97003 * 119.99884 * 359.97438 * 1 2 3 16 16 H 1.09001 * 109.46897 * 60.00076 * 9 7 2 17 17 H 1.08999 * 109.46840 * 300.00193 * 9 7 2 18 18 H 1.07992 * 127.48942 * 179.97438 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2302 -3.6446 -0.0018 11 7 2.6712 -4.1600 1.1208 12 6 3.5194 -5.1529 1.0266 13 16 3.7311 -5.4008 -0.6654 14 7 2.6661 -4.1558 -1.1175 15 1 -0.4850 0.8401 0.0004 16 1 0.6239 -2.5567 -0.8903 17 1 0.6246 -2.5571 0.8897 18 1 3.9859 -5.6977 1.8340 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259869950.mol2 18 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:57:05 Heat of formation + Delta-G solvation = 46.343134 kcal Electronic energy + Delta-G solvation = -7502.031344 eV Core-core repulsion = 5853.427547 eV Total energy + Delta-G solvation = -1648.603798 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 170.021 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -39.56608 -33.32587 -31.76558 -28.98670 -25.12897 -22.98670 -19.08992 -18.24376 -16.50988 -15.41492 -14.57612 -14.36676 -13.06347 -12.24008 -11.75335 -11.33643 -11.05753 -10.74399 -10.69566 -10.00568 -9.88464 -9.55492 -9.21878 -8.49854 -8.47380 -6.12247 -4.15598 0.97263 1.75783 2.29386 3.28394 3.30321 3.36575 3.43352 4.38749 4.49455 5.24636 5.53411 6.19120 6.60432 7.31626 7.35958 7.81631 8.12657 8.31211 8.84312 9.47121 10.98701 Molecular weight = 170.02amu Principal moments of inertia in cm(-1) A = 0.093974 B = 0.012478 C = 0.012098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 297.883109 B = 2243.354685 C = 2313.897213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.903 3.097 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.510 4.510 8 H 0.056 0.944 9 C 0.097 3.903 10 C 0.300 3.700 11 N -0.495 5.495 12 C 0.060 3.940 13 S 0.135 5.865 14 N -0.463 5.463 15 H 0.264 0.736 16 H 0.049 0.951 17 H 0.053 0.947 18 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.046 -8.231 1.387 10.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.550 4.550 8 H 0.075 0.925 9 C 0.055 3.945 10 C 0.012 3.988 11 N -0.215 5.215 12 C -0.250 4.250 13 S 0.271 5.729 14 N -0.290 5.290 15 H 0.074 0.926 16 H 0.067 0.933 17 H 0.071 0.929 18 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 6.013 -8.276 0.148 10.231 hybrid contribution 0.268 1.171 0.888 1.494 sum 6.282 -7.105 1.036 9.540 Atomic orbital electron populations 1.69947 1.06003 1.27098 1.49931 1.24943 0.94970 0.99319 0.94823 0.86353 0.79958 0.82925 0.77724 1.19739 1.20754 1.20712 1.20848 0.92971 0.89268 1.51910 0.92537 1.18169 0.90555 0.85801 0.99957 1.24903 0.96292 0.96512 0.81061 1.67434 1.12944 1.10253 1.30857 1.30278 0.96778 0.96401 1.01568 1.84681 1.46321 1.37561 1.04291 1.77864 1.14824 1.09911 1.26363 0.92589 0.93286 0.92865 0.76951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.29 55.43 0.74 -25.54 13 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 13 3 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 13 4 H -0.27 -6.53 7.11 56.52 0.40 -6.12 13 5 H -0.28 -6.68 7.11 56.52 0.40 -6.27 13 6 H -0.28 -6.64 7.11 56.52 0.40 -6.23 13 7 C -0.51 -14.69 9.09 -34.44 -0.31 -15.01 13 8 H 0.06 1.64 7.74 -52.49 -0.41 1.24 13 9 C 0.10 2.61 5.51 -29.03 -0.16 2.45 13 10 C 0.30 7.10 6.75 -159.05 -1.07 6.02 13 11 N -0.50 -10.41 10.56 -15.19 -0.16 -10.57 13 12 C 0.06 0.94 12.70 52.38 0.67 1.60 13 13 S 0.14 2.23 23.81 -107.50 -2.56 -0.33 13 14 N -0.46 -10.41 12.17 29.43 0.36 -10.06 13 15 H 0.26 7.29 8.31 -40.82 -0.34 6.95 13 16 H 0.05 1.37 8.14 -51.93 -0.42 0.95 13 17 H 0.05 1.47 8.14 -51.93 -0.42 1.05 13 18 H 0.21 2.08 8.06 -52.49 -0.42 1.66 13 LS Contribution 190.58 15.07 2.87 2.87 Total: -1.00 -31.36 190.58 -5.56 -36.93 By element: Atomic # 1 Polarization: -5.99 SS G_CDS: -0.81 Total: -6.80 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -0.98 Total: -3.26 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: 0.93 Total: -46.16 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -2.56 Total: -0.33 kcal Total LS contribution 2.87 Total: 2.87 kcal Total: -31.36 -5.56 -36.93 kcal The number of atoms in the molecule is 18 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259869950.mol2 18 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.270 kcal (2) G-P(sol) polarization free energy of solvation -31.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds