Wall clock time and date at job start Thu Apr 9 2020 13:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 120.00211 * 2 1 4 4 H 1.48501 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47180 * 300.00244 * 3 2 1 6 6 H 1.48499 * 109.46858 * 60.00405 * 3 2 1 7 7 C 1.37876 * 120.00021 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50710 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.46934 * 179.97438 * 9 7 2 11 11 N 1.31164 * 121.09529 * 90.00216 * 10 9 7 12 12 C 1.30923 * 117.01951 * 179.97438 * 11 10 9 13 13 S 1.72314 * 105.02928 * 0.02562 * 12 11 10 14 14 N 1.30236 * 121.10199 * 269.97458 * 10 9 7 15 15 H 0.97003 * 119.99884 * 359.97438 * 1 2 3 16 16 H 1.09001 * 109.46897 * 60.00076 * 9 7 2 17 17 H 1.08999 * 109.46840 * 300.00193 * 9 7 2 18 18 H 1.07992 * 127.48942 * 179.97438 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2302 -3.6446 -0.0018 11 7 2.6712 -4.1600 1.1208 12 6 3.5194 -5.1529 1.0266 13 16 3.7311 -5.4008 -0.6654 14 7 2.6661 -4.1558 -1.1175 15 1 -0.4850 0.8401 0.0004 16 1 0.6239 -2.5567 -0.8903 17 1 0.6246 -2.5571 0.8897 18 1 3.9859 -5.6977 1.8340 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259869950.mol2 18 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:57:04 Heat of formation + Delta-G solvation = 23.923813 kcal Electronic energy + Delta-G solvation = -7503.003519 eV Core-core repulsion = 5853.427547 eV Total energy + Delta-G solvation = -1649.575972 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 170.021 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -41.15350 -35.41495 -33.44897 -30.99780 -26.87679 -24.85330 -20.77360 -19.71714 -18.68804 -16.95050 -16.43075 -16.01417 -14.80102 -14.25006 -13.69125 -13.22180 -12.72032 -12.59822 -12.47618 -11.91684 -11.72315 -11.41409 -10.70134 -10.67198 -9.97683 -8.28712 -6.41481 -0.44038 0.41289 0.74950 1.38620 1.40095 1.52745 1.71170 2.38740 3.02676 3.11812 4.26253 4.54701 4.82310 5.16778 5.28523 5.61024 5.97742 6.63987 6.73983 7.25894 8.82997 Molecular weight = 170.02amu Principal moments of inertia in cm(-1) A = 0.093974 B = 0.012478 C = 0.012098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 297.883109 B = 2243.354685 C = 2313.897213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.010 3.990 3 Si 0.974 3.026 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.531 4.531 8 H 0.048 0.952 9 C 0.104 3.896 10 C 0.286 3.714 11 N -0.537 5.537 12 C 0.088 3.912 13 S 0.208 5.792 14 N -0.515 5.515 15 H 0.270 0.730 16 H 0.022 0.978 17 H 0.031 0.969 18 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.888 -8.840 1.933 12.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.189 4.189 3 Si 0.798 3.202 4 H -0.194 1.194 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.570 4.570 8 H 0.066 0.934 9 C 0.062 3.938 10 C -0.003 4.003 11 N -0.258 5.258 12 C -0.220 4.220 13 S 0.346 5.654 14 N -0.344 5.344 15 H 0.079 0.921 16 H 0.040 0.960 17 H 0.050 0.950 18 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 7.869 -8.916 0.700 11.912 hybrid contribution -0.215 1.163 0.710 1.380 sum 7.653 -7.752 1.410 10.985 Atomic orbital electron populations 1.70053 1.07545 1.28420 1.50272 1.25886 0.95914 1.03089 0.94009 0.85263 0.78494 0.78122 0.78323 1.19384 1.19804 1.19471 1.21068 0.92691 0.90700 1.52519 0.93376 1.17744 0.91048 0.87437 0.97564 1.24214 0.96947 0.96709 0.82394 1.67368 1.15530 1.12784 1.30107 1.31286 0.93857 0.93958 1.02850 1.84333 1.43195 1.33874 1.04032 1.77523 1.17000 1.12546 1.27373 0.92059 0.95957 0.95043 0.70864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.59 13.29 21.45 0.28 -55.31 13 2 C 0.01 0.60 5.46 84.66 0.46 1.06 13 3 Si 0.97 44.76 29.54 68.60 2.03 46.78 13 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 13 5 H -0.27 -12.07 7.11 99.48 0.71 -11.36 13 6 H -0.27 -11.81 7.11 99.48 0.71 -11.11 13 7 C -0.53 -31.36 9.09 25.60 0.23 -31.13 13 8 H 0.05 2.85 7.74 -2.91 -0.02 2.82 13 9 C 0.10 5.85 5.51 29.10 0.16 6.01 13 10 C 0.29 13.70 6.75 139.40 0.94 14.64 13 11 N -0.54 -21.96 10.56 -201.96 -2.13 -24.09 13 12 C 0.09 2.40 12.70 130.38 1.66 4.06 13 13 S 0.21 6.25 23.81 -56.49 -1.35 4.91 13 14 N -0.52 -23.13 12.17 -60.79 -0.74 -23.87 13 15 H 0.27 15.06 8.31 -92.71 -0.77 14.29 13 16 H 0.02 1.33 8.14 -2.39 -0.02 1.31 13 17 H 0.03 1.84 8.14 -2.39 -0.02 1.82 13 18 H 0.28 3.65 8.06 -2.91 -0.02 3.63 13 Total: -1.00 -69.76 190.58 2.81 -66.94 By element: Atomic # 1 Polarization: -11.27 SS G_CDS: 1.27 Total: -10.01 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: 3.45 Total: -5.36 kcal Atomic # 7 Polarization: -100.68 SS G_CDS: -2.59 Total: -103.27 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Atomic # 16 Polarization: 6.25 SS G_CDS: -1.35 Total: 4.91 kcal Total: -69.76 2.81 -66.94 kcal The number of atoms in the molecule is 18 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259869950.mol2 18 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.867 kcal (2) G-P(sol) polarization free energy of solvation -69.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds