Wall clock time and date at job start Thu Apr 9 2020 13:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30695 * 1 3 3 Si 1.86798 * 119.99967 * 2 1 4 4 H 1.48498 * 109.47220 * 269.99941 * 3 2 1 5 5 H 1.48499 * 109.47202 * 30.00188 * 3 2 1 6 6 H 1.48501 * 109.46821 * 149.99942 * 3 2 1 7 7 C 1.40302 * 119.99986 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00238 * 197.79654 * 7 2 1 9 9 C 1.40081 * 120.00037 * 17.79018 * 7 2 1 10 10 C 1.31948 * 116.75777 * 201.05611 * 9 7 2 11 11 C 1.48978 * 129.27413 * 181.96829 * 10 9 7 12 12 C 1.52841 * 112.05615 * 339.95279 * 11 10 9 13 13 S 1.82034 * 108.20180 * 51.02523 * 12 11 10 14 14 C 1.50055 * 116.71473 * 20.98283 * 9 7 2 15 15 H 0.97003 * 119.99855 * 359.97438 * 1 2 3 16 16 H 1.08000 * 115.31897 * 1.84910 * 10 9 7 17 17 H 1.09006 * 108.94610 * 219.32388 * 11 10 9 18 18 H 1.08995 * 108.95444 * 100.59587 * 11 10 9 19 19 H 1.09003 * 109.71761 * 170.69373 * 12 11 10 20 20 H 1.08991 * 109.72238 * 291.30137 * 12 11 10 21 21 H 1.09005 * 109.50898 * 41.38101 * 14 9 7 22 22 H 1.09002 * 109.50293 * 281.25557 * 14 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 2.4884 2.0464 -1.4000 5 1 1.4384 2.6526 0.7001 6 1 3.5385 1.4401 0.7001 7 6 2.0085 -1.2150 -0.0005 8 1 3.0497 -1.2376 0.2853 9 6 1.3583 -2.3990 -0.3717 10 6 1.9000 -3.5289 0.0416 11 6 1.4713 -4.9315 -0.2201 12 6 0.0079 -5.0130 -0.6535 13 16 -0.2471 -3.8363 -2.0188 14 6 0.1143 -2.2549 -1.1984 15 1 -0.4850 0.8401 0.0004 16 1 2.7815 -3.4209 0.6562 17 1 1.6043 -5.5177 0.6893 18 1 2.0975 -5.3522 -1.0068 19 1 -0.2197 -6.0238 -0.9920 20 1 -0.6388 -4.7513 0.1839 21 1 0.2648 -1.4805 -1.9507 22 1 -0.7209 -1.9798 -0.5541 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259956392.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:57:11 Heat of formation + Delta-G solvation = -17.771673 kcal Electronic energy + Delta-G solvation = -7971.796500 eV Core-core repulsion = 6423.952819 eV Total energy + Delta-G solvation = -1547.843681 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 170.046 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -37.98525 -35.09044 -32.18470 -28.48623 -27.10813 -23.79059 -19.98108 -18.34482 -17.15001 -16.59910 -15.72936 -14.90239 -14.84315 -14.35243 -14.02399 -13.16748 -13.00770 -12.78200 -12.32513 -12.16121 -12.02875 -11.31315 -11.12334 -10.60919 -9.60354 -8.65371 -8.47657 -6.37415 1.09774 1.23438 1.37490 1.49244 1.72287 1.93429 2.22589 3.17656 4.18417 4.23026 4.50432 4.60245 4.74501 4.96324 5.11566 5.21291 5.32546 5.37918 5.84129 6.20216 6.63143 6.85719 7.24232 8.31822 Molecular weight = 170.05amu Principal moments of inertia in cm(-1) A = 0.082306 B = 0.015837 C = 0.014140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 340.112741 B = 1767.638822 C = 1979.783302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.038 3.962 3 Si 0.978 3.022 4 H -0.262 1.262 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.516 4.516 8 H 0.061 0.939 9 C 0.050 3.950 10 C -0.392 4.392 11 C -0.038 4.038 12 C -0.055 4.055 13 S -0.348 6.348 14 C 0.021 3.979 15 H 0.290 0.710 16 H 0.054 0.946 17 H 0.070 0.930 18 H 0.051 0.949 19 H 0.123 0.877 20 H 0.075 0.925 21 H 0.075 0.925 22 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.613 -2.057 -0.662 2.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.176 4.176 3 Si 0.800 3.200 4 H -0.187 1.187 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.548 4.548 8 H 0.080 0.920 9 C 0.047 3.953 10 C -0.414 4.414 11 C -0.076 4.076 12 C -0.202 4.202 13 S -0.122 6.122 14 C -0.126 4.126 15 H 0.101 0.899 16 H 0.073 0.927 17 H 0.089 0.911 18 H 0.069 0.931 19 H 0.141 0.859 20 H 0.093 0.907 21 H 0.093 0.907 22 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.157 -2.114 -1.734 2.969 hybrid contribution 0.809 1.127 1.300 1.902 sum -0.348 -0.987 -0.434 1.133 Atomic orbital electron populations 1.69680 1.08602 1.30586 1.37650 1.26729 0.95533 1.04267 0.91036 0.85252 0.78971 0.76351 0.79447 1.18721 1.18996 1.18975 1.19714 0.97882 0.92828 1.44332 0.92037 1.17708 0.91816 0.94171 0.91582 1.21002 1.09073 0.93424 1.17906 1.19684 0.93239 0.94756 0.99947 1.23270 1.00278 0.99626 0.97061 1.86248 1.91435 1.08410 1.26071 1.22037 1.00275 0.91032 0.99293 0.89942 0.92731 0.91121 0.93063 0.85893 0.90661 0.90687 0.88968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -42.89 10.52 21.89 0.23 -42.66 14 2 C 0.04 1.93 5.02 85.36 0.43 2.36 14 3 Si 0.98 39.12 29.60 68.60 2.03 41.15 14 4 H -0.26 -10.18 7.11 99.48 0.71 -9.47 14 5 H -0.27 -9.96 7.11 99.48 0.71 -9.25 14 6 H -0.27 -10.61 7.11 99.48 0.71 -9.91 14 7 C -0.52 -28.69 8.66 23.22 0.20 -28.49 14 8 H 0.06 3.45 7.76 -2.91 -0.02 3.43 14 9 C 0.05 2.73 5.49 -20.49 -0.11 2.61 14 10 C -0.39 -19.92 9.13 24.28 0.22 -19.69 14 11 C -0.04 -1.54 5.92 29.26 0.17 -1.36 14 12 C -0.05 -2.04 6.58 71.93 0.47 -1.57 14 13 S -0.35 -15.18 22.34 -56.49 -1.26 -16.44 14 14 C 0.02 1.07 4.71 71.03 0.33 1.40 14 15 H 0.29 13.42 8.29 -92.71 -0.77 12.65 14 16 H 0.05 2.89 7.67 -2.91 -0.02 2.87 14 17 H 0.07 2.52 8.14 -2.38 -0.02 2.50 14 18 H 0.05 2.00 8.14 -2.39 -0.02 1.98 14 19 H 0.12 3.66 8.14 -2.39 -0.02 3.65 14 20 H 0.07 2.81 8.14 -2.39 -0.02 2.79 14 21 H 0.07 3.97 7.62 -2.39 -0.02 3.95 14 22 H 0.09 4.89 6.86 -2.39 -0.02 4.87 14 Total: -1.00 -56.55 200.07 3.91 -52.63 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: 1.19 Total: 10.05 kcal Atomic # 6 Polarization: -46.46 SS G_CDS: 1.72 Total: -44.74 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: 0.23 Total: -42.66 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.15 kcal Atomic # 16 Polarization: -15.18 SS G_CDS: -1.26 Total: -16.44 kcal Total: -56.55 3.91 -52.63 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259956392.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.861 kcal (2) G-P(sol) polarization free energy of solvation -56.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds