Wall clock time and date at job start Thu Apr 9 2020 13:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99666 * 2 1 4 4 H 1.48507 * 109.47173 * 269.99417 * 3 2 1 5 5 H 1.48501 * 109.47617 * 29.99522 * 3 2 1 6 6 H 1.48506 * 109.47114 * 149.99794 * 3 2 1 7 7 C 1.37871 * 120.00051 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00256 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99896 * 180.02562 * 7 2 1 10 10 H 1.09004 * 109.47080 * 300.00270 * 9 7 2 11 11 N 1.46894 * 109.47104 * 59.99934 * 9 7 2 12 12 C 1.50700 * 109.47088 * 180.02562 * 9 7 2 13 13 N 1.36985 * 125.96497 * 265.02557 * 12 9 7 14 14 H 0.97000 * 125.63766 * 359.94239 * 13 12 9 15 15 C 1.36281 * 108.72251 * 179.97438 * 13 12 9 16 16 C 1.34871 * 108.36003 * 0.26395 * 15 13 12 17 17 C 1.35257 * 125.96419 * 84.98508 * 12 9 7 18 18 N 1.40771 * 126.32915 * 0.02962 * 17 12 9 19 19 H 0.97000 * 120.00333 * 0.02562 * 1 2 3 20 20 H 1.00903 * 111.00101 * 60.00343 * 11 9 7 21 21 H 1.00897 * 111.00171 * 183.95267 * 11 9 7 22 22 H 1.08002 * 125.81561 * 179.97438 * 15 13 12 23 23 H 1.08000 * 126.24365 * 179.71794 * 16 15 13 24 24 H 0.96992 * 120.00337 * 0.02562 * 18 17 12 25 25 H 0.97000 * 119.99715 * 180.02562 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 1 3.8752 -0.6803 -0.8888 11 7 4.0007 -0.5012 1.2005 12 6 4.0139 -2.6148 0.0010 13 7 4.3723 -3.3414 1.1055 14 1 4.3459 -3.0261 2.0225 15 6 4.7728 -4.5803 0.7030 16 6 4.6770 -4.6420 -0.6409 17 6 4.1889 -3.3953 -1.0897 18 7 3.9367 -3.0302 -2.4256 19 1 -0.4850 0.8400 -0.0004 20 1 3.6769 -0.9586 2.0396 21 1 5.0072 -0.4311 1.1924 22 1 5.1136 -5.3755 1.3496 23 1 4.9260 -5.4908 -1.2605 24 1 3.6047 -2.1425 -2.6314 25 1 4.0951 -3.6666 -3.1404 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238584388.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:06 Heat of formation + Delta-G solvation = 26.063819 kcal Electronic energy + Delta-G solvation = -10823.899950 eV Core-core repulsion = 8836.989520 eV Total energy + Delta-G solvation = -1986.910430 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.091 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.72175 -36.37520 -34.83754 -33.81415 -30.18668 -29.11975 -27.55973 -23.56071 -21.31469 -20.35863 -18.91021 -18.44387 -16.74928 -16.60459 -15.85974 -15.38039 -14.91301 -14.64659 -14.26759 -13.63624 -13.46311 -12.89801 -12.69828 -12.21353 -11.84667 -11.45169 -11.36350 -10.72004 -9.02137 -8.92695 -8.20686 -7.70717 -6.32426 1.53030 1.59705 1.65178 1.96090 2.45915 2.62851 2.69938 3.18815 3.63688 4.21123 4.49343 4.60408 4.83122 4.97418 5.33705 5.39178 5.60623 6.06060 6.19253 6.27117 6.57269 6.80856 7.00278 7.02972 7.12743 7.45324 7.49463 8.93682 Molecular weight = 181.09amu Principal moments of inertia in cm(-1) A = 0.055073 B = 0.014499 C = 0.013605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.294203 B = 1930.723910 C = 2057.561791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.021 3.979 3 Si 0.934 3.066 4 H -0.301 1.301 5 H -0.317 1.317 6 H -0.157 1.157 7 C -0.506 4.506 8 H 0.014 0.986 9 C 0.273 3.727 10 H 0.040 0.960 11 N -0.836 5.836 12 C -0.087 4.087 13 N -0.549 5.549 14 H 0.417 0.583 15 C 0.009 3.991 16 C -0.269 4.269 17 C 0.096 3.904 18 N -0.877 5.877 19 H 0.261 0.739 20 H 0.332 0.668 21 H 0.331 0.669 22 H 0.198 0.802 23 H 0.143 0.857 24 H 0.390 0.610 25 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.428 -5.365 1.382 13.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.229 1.229 5 H -0.246 1.246 6 H -0.077 1.077 7 C -0.544 4.544 8 H 0.033 0.967 9 C 0.162 3.838 10 H 0.057 0.943 11 N -0.367 5.367 12 C -0.204 4.204 13 N -0.147 5.147 14 H 0.254 0.746 15 C -0.125 4.125 16 C -0.298 4.298 17 C -0.010 4.010 18 N -0.423 5.423 19 H 0.069 0.931 20 H 0.145 0.855 21 H 0.143 0.857 22 H 0.215 0.785 23 H 0.161 0.839 24 H 0.217 0.783 25 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 11.910 -4.620 1.370 12.848 hybrid contribution -0.279 -0.100 -0.055 0.302 sum 11.631 -4.720 1.315 12.621 Atomic orbital electron populations 1.70130 1.08996 1.27931 1.52462 1.25967 0.95138 1.04007 0.92583 0.86253 0.84349 0.75875 0.77614 1.22862 1.24562 1.07738 1.20998 0.90539 0.91843 1.51053 0.96715 1.17494 0.92071 0.83676 0.90545 0.94263 1.59636 1.14408 1.57628 1.05001 1.20791 1.14869 0.98315 0.86419 1.41514 1.53354 1.11800 1.08002 0.74560 1.22102 1.06168 0.88694 0.95542 1.20714 1.15961 0.97933 0.95233 1.17271 1.03483 0.94562 0.85676 1.41538 1.79778 1.17965 1.03023 0.93105 0.85499 0.85655 0.78478 0.83942 0.78281 0.77436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.45 13.96 21.45 0.30 -61.15 15 2 C 0.02 1.22 5.47 84.65 0.46 1.69 15 3 Si 0.93 44.78 26.94 68.60 1.85 46.63 15 4 H -0.30 -14.51 7.11 99.48 0.71 -13.80 15 5 H -0.32 -15.77 7.11 99.48 0.71 -15.07 15 6 H -0.16 -6.57 5.17 99.48 0.51 -6.06 15 7 C -0.51 -28.87 9.29 25.60 0.24 -28.64 15 8 H 0.01 0.97 7.98 -2.91 -0.02 0.94 15 9 C 0.27 12.25 2.32 43.42 0.10 12.35 15 10 H 0.04 1.83 7.22 -2.39 -0.02 1.81 15 11 N -0.84 -31.64 5.72 -174.96 -1.00 -32.64 15 12 C -0.09 -3.54 6.06 41.07 0.25 -3.29 15 13 N -0.55 -17.79 5.93 -182.08 -1.08 -18.87 15 14 H 0.42 11.33 8.16 -92.71 -0.76 10.58 15 15 C 0.01 0.24 11.93 83.23 0.99 1.24 15 16 C -0.27 -8.88 10.87 22.22 0.24 -8.64 15 17 C 0.10 3.75 7.27 37.74 0.27 4.03 15 18 N -0.88 -31.47 9.19 -51.39 -0.47 -31.94 15 19 H 0.26 15.89 8.31 -92.71 -0.77 15.12 15 20 H 0.33 11.94 8.18 -89.69 -0.73 11.21 15 21 H 0.33 10.47 9.06 -89.70 -0.81 9.65 15 22 H 0.20 3.77 8.06 -2.91 -0.02 3.75 15 23 H 0.14 3.99 8.06 -2.91 -0.02 3.97 15 24 H 0.39 14.74 8.34 -92.71 -0.77 13.97 15 25 H 0.40 11.71 8.96 -92.71 -0.83 10.87 15 Total: -1.00 -71.61 216.65 -0.68 -72.29 By element: Atomic # 1 Polarization: 49.78 SS G_CDS: -2.84 Total: 46.95 kcal Atomic # 6 Polarization: -23.82 SS G_CDS: 2.56 Total: -21.27 kcal Atomic # 7 Polarization: -142.35 SS G_CDS: -2.25 Total: -144.60 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.85 Total: 46.63 kcal Total: -71.61 -0.68 -72.29 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238584388.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.356 kcal (2) G-P(sol) polarization free energy of solvation -71.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds