Wall clock time and date at job start Thu Apr 9 2020 13:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 108.76816 * 2 1 4 4 C 1.54064 * 108.87494 * 241.49000 * 2 1 3 5 5 C 1.54073 * 112.81374 * 197.50668 * 4 2 1 6 6 C 1.50474 * 112.49620 * 318.28120 * 5 4 2 7 7 C 1.54246 * 108.52142 * 94.14997 * 6 5 4 8 8 C 1.45540 * 112.40569 * 280.01620 * 7 6 5 9 9 C 1.50471 * 108.87302 * 118.51391 * 2 1 3 10 10 H 1.08998 * 109.79291 * 95.12931 * 9 2 1 11 11 C 1.50694 * 109.63148 * 334.63685 * 9 2 1 12 12 H 1.07999 * 120.00616 * 306.35859 * 11 9 2 13 13 C 1.37879 * 120.00125 * 126.35417 * 11 9 2 14 14 N 1.31518 * 119.99833 * 10.38038 * 13 11 9 15 15 Si 1.86795 * 120.00276 * 190.37882 * 13 11 9 16 16 H 1.48506 * 109.47458 * 180.02562 * 15 13 11 17 17 H 1.48500 * 109.47343 * 300.00469 * 15 13 11 18 18 H 1.48509 * 109.46933 * 60.00348 * 15 13 11 19 19 H 1.08998 * 109.47682 * 308.77433 * 1 2 3 20 20 H 1.09005 * 109.47103 * 68.77358 * 1 2 3 21 21 H 1.08999 * 109.46999 * 188.76973 * 1 2 3 22 22 H 1.08999 * 108.81442 * 76.65014 * 4 2 1 23 23 H 1.08993 * 108.72901 * 318.30372 * 4 2 1 24 24 H 1.09000 * 108.87660 * 197.50947 * 5 4 2 25 25 H 1.08999 * 108.79895 * 79.00588 * 5 4 2 26 26 H 1.08999 * 109.62811 * 334.44353 * 6 5 4 27 27 H 1.09001 * 109.63013 * 213.85784 * 6 5 4 28 28 H 1.08997 * 108.89594 * 159.25728 * 7 6 5 29 29 H 1.09002 * 108.81579 * 40.71672 * 7 6 5 30 30 H 1.08997 * 108.89331 * 301.17969 * 8 7 6 31 31 H 1.09000 * 108.81364 * 182.63735 * 8 7 6 32 32 H 0.97006 * 120.00128 * 357.15822 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8807 1.0320 0.0000 4 6 2.0284 -0.6958 -1.2810 5 6 3.5033 -1.1319 -1.1888 6 6 4.3714 -0.0917 -0.5342 7 6 4.4787 -0.4187 0.9694 8 6 3.3098 0.0201 1.7173 9 6 2.0167 -0.6797 1.2511 10 1 2.2229 -1.7298 1.0443 11 6 0.9669 -0.5722 2.3268 12 1 0.5678 0.3942 2.5973 13 6 0.5158 -1.7076 2.9659 14 7 1.1375 -2.8530 2.7884 15 14 -0.9781 -1.6193 4.0837 16 1 -1.2561 -2.9654 4.6459 17 1 -0.7123 -0.6661 5.1909 18 1 -2.1536 -1.1559 3.3032 19 1 -0.3634 0.6435 0.8011 20 1 -0.3633 0.3721 -0.9580 21 1 -0.3633 -1.0156 0.1567 22 1 1.9167 -0.0092 -2.1202 23 1 1.4123 -1.5762 -1.4634 24 1 3.8783 -1.3221 -2.1944 25 1 3.5614 -2.0542 -0.6109 26 1 3.9231 0.8934 -0.6635 27 1 5.3641 -0.1074 -0.9840 28 1 5.3626 0.0731 1.3754 29 1 4.5894 -1.4966 1.0877 30 1 3.1938 1.0965 1.5913 31 1 3.4670 -0.1963 2.7740 32 1 1.8879 -2.9078 2.1761 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060247711.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:57:40 Heat of formation + Delta-G solvation = -35.759137 kcal Electronic energy + Delta-G solvation = -11846.460990 eV Core-core repulsion = 9998.524492 eV Total energy + Delta-G solvation = -1847.936498 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.40441 -33.63381 -32.40795 -30.76915 -26.44566 -25.24941 -22.76053 -21.84910 -19.71776 -18.33080 -16.42415 -14.54418 -14.26751 -13.95339 -13.69261 -13.38358 -12.55532 -12.10639 -11.86735 -11.69689 -11.29734 -10.74038 -10.69591 -10.49247 -10.23756 -10.06762 -10.02640 -9.70180 -9.55721 -9.11338 -8.83491 -8.42769 -8.05581 -6.26590 -3.89240 3.47094 3.48615 3.67036 4.59082 5.31325 5.40969 5.45934 5.52742 5.91848 5.96785 6.06828 6.14876 6.26206 6.40169 6.43530 6.48482 6.64772 6.75596 6.82949 6.84987 6.94205 6.97908 7.11452 7.25129 7.37755 7.45219 7.68799 7.79948 8.42414 8.54874 9.01486 9.78211 11.13296 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.051287 B = 0.014637 C = 0.013122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.811432 B = 1912.553109 C = 2133.358091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.077 4.077 3 H 0.041 0.959 4 C -0.110 4.110 5 C -0.114 4.114 6 C -0.113 4.113 7 C -0.111 4.111 8 C -0.113 4.113 9 C 0.032 3.968 10 H 0.046 0.954 11 C -0.581 4.581 12 H 0.046 0.954 13 C 0.020 3.980 14 N -0.917 5.917 15 Si 1.060 2.940 16 H -0.284 1.284 17 H -0.290 1.290 18 H -0.288 1.288 19 H 0.056 0.944 20 H 0.013 0.987 21 H 0.051 0.949 22 H 0.041 0.959 23 H 0.051 0.949 24 H 0.044 0.956 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.048 0.952 28 H 0.038 0.962 29 H 0.052 0.948 30 H 0.035 0.965 31 H 0.049 0.951 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.783 4.070 -5.579 7.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.096 4.096 3 H 0.059 0.941 4 C -0.147 4.147 5 C -0.152 4.152 6 C -0.150 4.150 7 C -0.148 4.148 8 C -0.151 4.151 9 C 0.013 3.987 10 H 0.064 0.936 11 C -0.620 4.620 12 H 0.064 0.936 13 C -0.184 4.184 14 N -0.555 5.555 15 Si 0.889 3.111 16 H -0.210 1.210 17 H -0.216 1.216 18 H -0.215 1.215 19 H 0.075 0.925 20 H 0.032 0.968 21 H 0.070 0.930 22 H 0.060 0.940 23 H 0.070 0.930 24 H 0.063 0.937 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.821 3.154 -4.560 5.836 hybrid contribution 0.992 0.985 -1.003 1.720 sum 2.813 4.139 -5.563 7.482 Atomic orbital electron populations 1.21653 0.95895 1.01964 0.97553 1.21078 0.95579 0.98054 0.94896 0.94057 1.22002 0.95022 0.99677 0.98048 1.21294 0.95470 0.99288 0.99148 1.21300 0.98162 0.99461 0.96085 1.20558 0.98624 1.00799 0.94866 1.20701 0.96144 0.99119 0.99152 1.18770 0.91861 0.95921 0.92117 0.93561 1.21812 1.23313 0.95053 1.21799 0.93580 1.25700 1.01180 0.92835 0.98651 1.70835 1.22100 1.27443 1.35079 0.83673 0.75734 0.75745 0.75953 1.20981 1.21649 1.21460 0.92521 0.96781 0.92977 0.94044 0.93013 0.93710 0.92141 0.92129 0.93328 0.94286 0.92913 0.94616 0.93239 0.91849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.45 7.92 37.16 0.29 -2.15 16 2 C -0.08 -1.66 2.10 -91.33 -0.19 -1.85 16 3 H 0.04 0.87 6.63 -51.93 -0.34 0.52 16 4 C -0.11 -2.05 5.21 -25.62 -0.13 -2.19 16 5 C -0.11 -1.98 5.32 -27.43 -0.15 -2.13 16 6 C -0.11 -1.89 5.61 -27.34 -0.15 -2.04 16 7 C -0.11 -2.09 5.26 -29.60 -0.16 -2.24 16 8 C -0.11 -2.51 4.67 -29.60 -0.14 -2.65 16 9 C 0.03 0.78 1.86 -92.39 -0.17 0.61 16 10 H 0.05 1.23 4.73 -51.93 -0.25 0.98 16 11 C -0.58 -15.87 5.93 -34.44 -0.20 -16.07 16 12 H 0.05 1.27 7.24 -52.49 -0.38 0.89 16 13 C 0.02 0.56 5.44 -17.82 -0.10 0.47 16 14 N -0.92 -27.55 13.64 55.43 0.76 -26.79 16 15 Si 1.06 25.25 29.92 -169.99 -5.09 20.17 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 19 H 0.06 1.26 6.82 -51.93 -0.35 0.91 16 20 H 0.01 0.25 8.10 -51.93 -0.42 -0.17 16 21 H 0.05 1.22 7.88 -51.93 -0.41 0.81 16 22 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.05 0.99 7.97 -51.93 -0.41 0.58 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 1.13 6.63 -51.93 -0.34 0.79 16 26 H 0.06 1.03 6.98 -51.93 -0.36 0.66 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 1.03 7.46 -51.93 -0.39 0.64 16 30 H 0.04 0.76 7.47 -51.93 -0.39 0.37 16 31 H 0.05 1.18 7.97 -51.93 -0.41 0.77 16 32 H 0.27 8.05 6.38 -40.82 -0.26 7.79 16 LS Contribution 239.03 15.07 3.60 3.60 Total: -1.00 -28.48 239.03 -7.04 -35.52 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -5.21 Total: -2.26 kcal Atomic # 6 Polarization: -29.14 SS G_CDS: -1.10 Total: -30.24 kcal Atomic # 7 Polarization: -27.55 SS G_CDS: 0.76 Total: -26.79 kcal Atomic # 14 Polarization: 25.25 SS G_CDS: -5.09 Total: 20.17 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -28.48 -7.04 -35.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060247711.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.243 kcal (2) G-P(sol) polarization free energy of solvation -28.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds