Wall clock time and date at job start Thu Apr 9 2020 13:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 108.76816 * 2 1 4 4 C 1.54064 * 108.87494 * 241.49000 * 2 1 3 5 5 C 1.54073 * 112.81374 * 197.50668 * 4 2 1 6 6 C 1.50474 * 112.49620 * 318.28120 * 5 4 2 7 7 C 1.54246 * 108.52142 * 94.14997 * 6 5 4 8 8 C 1.45540 * 112.40569 * 280.01620 * 7 6 5 9 9 C 1.50471 * 108.87302 * 118.51391 * 2 1 3 10 10 H 1.08998 * 109.79291 * 95.12931 * 9 2 1 11 11 C 1.50694 * 109.63148 * 334.63685 * 9 2 1 12 12 H 1.07999 * 120.00616 * 306.35859 * 11 9 2 13 13 C 1.37879 * 120.00125 * 126.35417 * 11 9 2 14 14 N 1.31518 * 119.99833 * 10.38038 * 13 11 9 15 15 Si 1.86795 * 120.00276 * 190.37882 * 13 11 9 16 16 H 1.48506 * 109.47458 * 180.02562 * 15 13 11 17 17 H 1.48500 * 109.47343 * 300.00469 * 15 13 11 18 18 H 1.48509 * 109.46933 * 60.00348 * 15 13 11 19 19 H 1.08998 * 109.47682 * 308.77433 * 1 2 3 20 20 H 1.09005 * 109.47103 * 68.77358 * 1 2 3 21 21 H 1.08999 * 109.46999 * 188.76973 * 1 2 3 22 22 H 1.08999 * 108.81442 * 76.65014 * 4 2 1 23 23 H 1.08993 * 108.72901 * 318.30372 * 4 2 1 24 24 H 1.09000 * 108.87660 * 197.50947 * 5 4 2 25 25 H 1.08999 * 108.79895 * 79.00588 * 5 4 2 26 26 H 1.08999 * 109.62811 * 334.44353 * 6 5 4 27 27 H 1.09001 * 109.63013 * 213.85784 * 6 5 4 28 28 H 1.08997 * 108.89594 * 159.25728 * 7 6 5 29 29 H 1.09002 * 108.81579 * 40.71672 * 7 6 5 30 30 H 1.08997 * 108.89331 * 301.17969 * 8 7 6 31 31 H 1.09000 * 108.81364 * 182.63735 * 8 7 6 32 32 H 0.97006 * 120.00128 * 357.15822 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8807 1.0320 0.0000 4 6 2.0284 -0.6958 -1.2810 5 6 3.5033 -1.1319 -1.1888 6 6 4.3714 -0.0917 -0.5342 7 6 4.4787 -0.4187 0.9694 8 6 3.3098 0.0201 1.7173 9 6 2.0167 -0.6797 1.2511 10 1 2.2229 -1.7298 1.0443 11 6 0.9669 -0.5722 2.3268 12 1 0.5678 0.3942 2.5973 13 6 0.5158 -1.7076 2.9659 14 7 1.1375 -2.8530 2.7884 15 14 -0.9781 -1.6193 4.0837 16 1 -1.2561 -2.9654 4.6459 17 1 -0.7123 -0.6661 5.1909 18 1 -2.1536 -1.1559 3.3032 19 1 -0.3634 0.6435 0.8011 20 1 -0.3633 0.3721 -0.9580 21 1 -0.3633 -1.0156 0.1567 22 1 1.9167 -0.0092 -2.1202 23 1 1.4123 -1.5762 -1.4634 24 1 3.8783 -1.3221 -2.1944 25 1 3.5614 -2.0542 -0.6109 26 1 3.9231 0.8934 -0.6635 27 1 5.3641 -0.1074 -0.9840 28 1 5.3626 0.0731 1.3754 29 1 4.5894 -1.4966 1.0877 30 1 3.1938 1.0965 1.5913 31 1 3.4670 -0.1963 2.7740 32 1 1.8879 -2.9078 2.1761 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060247711.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:57:39 Heat of formation + Delta-G solvation = -50.869036 kcal Electronic energy + Delta-G solvation = -11847.116205 eV Core-core repulsion = 9998.524492 eV Total energy + Delta-G solvation = -1848.591713 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.07505 -35.46615 -34.14156 -32.56647 -28.14712 -27.13836 -24.61486 -23.47406 -21.40235 -20.03758 -18.42266 -16.15047 -15.97708 -15.60837 -15.59760 -15.04637 -14.29314 -13.77635 -13.55074 -13.35139 -13.09334 -12.56082 -12.46287 -12.09834 -12.02517 -11.96063 -11.54065 -11.27262 -11.13638 -10.85785 -10.66934 -10.48383 -10.12509 -8.51340 -6.12871 1.52144 1.59376 1.77671 2.60581 3.28186 3.81447 3.96502 4.12984 4.38793 4.40560 4.45461 4.59569 4.74676 4.78513 4.92511 4.96091 5.02898 5.09441 5.24480 5.27406 5.35515 5.44873 5.47078 5.56778 5.58868 5.66228 5.77067 5.97951 6.31119 6.34002 6.82383 7.61129 8.89155 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.051287 B = 0.014637 C = 0.013122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.811432 B = 1912.553109 C = 2133.358091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.078 4.078 3 H 0.050 0.950 4 C -0.107 4.107 5 C -0.114 4.114 6 C -0.105 4.105 7 C -0.112 4.112 8 C -0.104 4.104 9 C 0.027 3.973 10 H 0.019 0.981 11 C -0.582 4.582 12 H 0.039 0.961 13 C -0.032 4.032 14 N -0.948 5.948 15 Si 1.101 2.899 16 H -0.289 1.289 17 H -0.275 1.275 18 H -0.271 1.271 19 H 0.042 0.958 20 H 0.046 0.954 21 H 0.023 0.977 22 H 0.070 0.930 23 H 0.039 0.961 24 H 0.075 0.925 25 H 0.036 0.964 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.061 0.939 29 H 0.037 0.963 30 H 0.043 0.957 31 H 0.018 0.982 32 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.116 5.445 -6.882 9.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.097 4.097 3 H 0.069 0.931 4 C -0.145 4.145 5 C -0.152 4.152 6 C -0.143 4.143 7 C -0.149 4.149 8 C -0.142 4.142 9 C 0.008 3.992 10 H 0.037 0.963 11 C -0.620 4.620 12 H 0.057 0.943 13 C -0.229 4.229 14 N -0.587 5.587 15 Si 0.924 3.076 16 H -0.215 1.215 17 H -0.200 1.200 18 H -0.196 1.196 19 H 0.061 0.939 20 H 0.065 0.935 21 H 0.042 0.958 22 H 0.088 0.912 23 H 0.058 0.942 24 H 0.094 0.906 25 H 0.055 0.945 26 H 0.083 0.917 27 H 0.098 0.902 28 H 0.079 0.921 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.037 0.963 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.162 4.552 -5.874 7.739 hybrid contribution 0.905 0.601 -0.608 1.245 sum 3.067 5.154 -6.482 8.831 Atomic orbital electron populations 1.21563 0.96194 0.99975 0.98854 1.21003 0.95413 0.98420 0.94844 0.93110 1.21960 0.95777 0.99539 0.97200 1.21303 0.94810 0.98406 1.00664 1.21271 0.99851 0.99181 0.93970 1.20509 0.97756 0.99970 0.96674 1.20561 0.96606 0.99270 0.97802 1.18788 0.92402 0.95027 0.93029 0.96312 1.22138 1.23459 0.94478 1.21955 0.94252 1.26963 1.03233 0.92608 1.00117 1.70950 1.22862 1.28512 1.36402 0.83137 0.73486 0.75838 0.75100 1.21453 1.20020 1.19642 0.93907 0.93468 0.95814 0.91153 0.94236 0.90592 0.94547 0.91674 0.90156 0.92073 0.94436 0.93800 0.96328 0.93196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.59 7.92 71.98 0.57 -4.02 16 2 C -0.08 -3.25 2.10 -11.25 -0.02 -3.27 16 3 H 0.05 2.01 6.63 -2.39 -0.02 2.00 16 4 C -0.11 -3.76 5.21 31.32 0.16 -3.60 16 5 C -0.11 -3.67 5.32 30.14 0.16 -3.51 16 6 C -0.11 -3.18 5.61 30.20 0.17 -3.01 16 7 C -0.11 -4.05 5.26 28.74 0.15 -3.90 16 8 C -0.10 -4.61 4.67 28.74 0.13 -4.47 16 9 C 0.03 1.31 1.86 -11.94 -0.02 1.28 16 10 H 0.02 1.03 4.73 -2.39 -0.01 1.01 16 11 C -0.58 -32.27 5.93 25.60 0.15 -32.12 16 12 H 0.04 2.19 7.24 -2.91 -0.02 2.17 16 13 C -0.03 -1.85 5.44 84.65 0.46 -1.39 16 14 N -0.95 -58.75 13.64 21.45 0.29 -58.45 16 15 Si 1.10 51.27 29.92 68.60 2.05 53.32 16 16 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 17 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 18 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 19 H 0.04 1.87 6.82 -2.39 -0.02 1.86 16 20 H 0.05 1.65 8.10 -2.38 -0.02 1.63 16 21 H 0.02 1.09 7.88 -2.39 -0.02 1.07 16 22 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 23 H 0.04 1.46 7.97 -2.39 -0.02 1.44 16 24 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.04 1.34 6.63 -2.39 -0.02 1.32 16 26 H 0.06 1.94 6.98 -2.39 -0.02 1.92 16 27 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.04 1.46 7.46 -2.39 -0.02 1.44 16 30 H 0.04 1.83 7.47 -2.39 -0.02 1.81 16 31 H 0.02 0.89 7.97 -2.39 -0.02 0.87 16 32 H 0.26 16.07 6.38 -92.70 -0.59 15.48 16 Total: -1.00 -61.96 239.03 5.50 -56.46 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: 1.24 Total: 6.68 kcal Atomic # 6 Polarization: -59.92 SS G_CDS: 1.91 Total: -58.00 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: 0.29 Total: -58.45 kcal Atomic # 14 Polarization: 51.27 SS G_CDS: 2.05 Total: 53.32 kcal Total: -61.96 5.50 -56.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060247711.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.588 kcal (2) G-P(sol) polarization free energy of solvation -61.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds