Wall clock time and date at job start Thu Apr 9 2020 13:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09001 * 110.01405 * 53.60687 * 3 2 1 5 5 C 1.54272 * 110.03522 * 292.17163 * 3 2 1 6 6 C 1.54884 * 104.19351 * 217.10175 * 5 3 2 7 7 C 1.54890 * 102.75308 * 37.94205 * 6 5 3 8 8 C 1.53872 * 110.03793 * 175.00282 * 3 2 1 9 9 H 1.09004 * 110.02965 * 359.97438 * 8 3 2 10 10 C 1.53000 * 110.03117 * 238.57538 * 8 3 2 11 11 C 1.50706 * 109.47361 * 174.99803 * 10 8 3 12 12 H 1.08007 * 119.99474 * 359.97438 * 11 10 8 13 13 C 1.37872 * 120.00320 * 180.02562 * 11 10 8 14 14 N 1.31508 * 120.00119 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 119.99956 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47222 * 59.99895 * 15 13 11 17 17 H 1.48500 * 109.47401 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47275 * 299.99926 * 15 13 11 19 19 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 20 20 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 22 22 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 23 23 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 24 24 H 1.08999 * 110.48003 * 335.77908 * 5 3 2 25 25 H 1.08997 * 110.48781 * 98.41989 * 5 3 2 26 26 H 1.09000 * 110.75605 * 279.62291 * 6 5 3 27 27 H 1.09007 * 110.91264 * 156.32548 * 6 5 3 28 28 H 1.08997 * 110.49008 * 203.37855 * 7 6 5 29 29 H 1.08999 * 110.59956 * 80.78489 * 7 6 5 30 30 H 1.09005 * 109.47130 * 294.99558 * 10 8 3 31 31 H 1.09002 * 109.47600 * 54.99756 * 10 8 3 32 32 H 0.96996 * 120.00521 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5915 1.9968 0.8244 5 6 1.7005 2.1231 -1.3422 6 6 2.9289 3.0202 -1.6345 7 6 4.1124 2.1497 -1.1440 8 6 3.5735 1.4595 0.1259 9 1 3.9544 0.4400 0.1875 10 6 3.9886 2.2500 1.3684 11 6 5.4819 2.1558 1.5481 12 1 6.0755 1.5884 0.8464 13 6 6.0902 2.7929 2.6087 14 7 5.3674 3.4834 3.4633 15 14 7.9411 2.6755 2.8317 16 1 8.6204 3.2388 1.6373 17 1 8.3441 3.4429 4.0376 18 1 8.3304 1.2521 2.9973 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 -0.8900 22 1 1.8934 -0.5138 0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 1.5772 1.3774 -2.1275 25 1 0.7998 2.7292 -1.2455 26 1 2.8720 3.9496 -1.0678 27 1 3.0161 3.2248 -2.7016 28 1 4.9718 2.7752 -0.9028 29 1 4.3807 1.4082 -1.8965 30 1 3.7025 3.2947 1.2467 31 1 3.4903 1.8366 2.2453 32 1 5.7954 3.9320 4.2092 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261144223.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:20 Heat of formation + Delta-G solvation = -61.315214 kcal Electronic energy + Delta-G solvation = -11284.446764 eV Core-core repulsion = 9435.402071 eV Total energy + Delta-G solvation = -1849.044693 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.76341 -35.22957 -33.87296 -31.77280 -28.34658 -27.71638 -24.74462 -22.89847 -21.01608 -20.05936 -18.29187 -16.67331 -16.17188 -15.99546 -15.26730 -14.46086 -14.17286 -13.65441 -13.59387 -13.39796 -12.99525 -12.67334 -12.64210 -12.31141 -11.91390 -11.76180 -11.60780 -11.34801 -11.25135 -11.19028 -10.96843 -10.67920 -10.51594 -8.17778 -6.27827 1.37961 1.41158 1.48945 2.40985 3.14558 3.85140 3.89950 3.95499 4.39178 4.42911 4.54587 4.70703 4.81166 4.84724 4.91718 4.98381 5.02641 5.11194 5.16299 5.22436 5.29024 5.37396 5.44119 5.50610 5.57187 5.65159 5.71350 5.85110 5.92426 6.30083 6.88615 7.40398 8.93830 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.055243 B = 0.010350 C = 0.009627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.726672 B = 2704.754376 C = 2907.787448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.112 4.112 3 C -0.092 4.092 4 H 0.045 0.955 5 C -0.105 4.105 6 C -0.121 4.121 7 C -0.113 4.113 8 C -0.080 4.080 9 H 0.049 0.951 10 C 0.039 3.961 11 C -0.532 4.532 12 H 0.058 0.942 13 C -0.003 4.003 14 N -0.936 5.936 15 Si 0.961 3.039 16 H -0.267 1.267 17 H -0.283 1.283 18 H -0.268 1.268 19 H 0.044 0.956 20 H 0.064 0.936 21 H 0.065 0.935 22 H 0.043 0.957 23 H 0.070 0.930 24 H 0.082 0.918 25 H 0.068 0.932 26 H 0.044 0.956 27 H 0.082 0.918 28 H 0.045 0.955 29 H 0.069 0.931 30 H -0.013 1.013 31 H -0.021 1.021 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.522 -4.537 -9.513 12.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.150 4.150 3 C -0.110 4.110 4 H 0.063 0.937 5 C -0.142 4.142 6 C -0.159 4.159 7 C -0.150 4.150 8 C -0.098 4.098 9 H 0.068 0.932 10 C 0.002 3.998 11 C -0.570 4.570 12 H 0.077 0.923 13 C -0.201 4.201 14 N -0.576 5.576 15 Si 0.786 3.214 16 H -0.192 1.192 17 H -0.209 1.209 18 H -0.192 1.192 19 H 0.063 0.937 20 H 0.083 0.917 21 H 0.084 0.916 22 H 0.062 0.938 23 H 0.089 0.911 24 H 0.101 0.899 25 H 0.087 0.913 26 H 0.063 0.937 27 H 0.101 0.899 28 H 0.064 0.936 29 H 0.087 0.913 30 H 0.005 0.995 31 H -0.002 1.002 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.514 -4.440 -9.357 12.236 hybrid contribution 1.048 0.267 0.852 1.377 sum -5.467 -4.173 -8.505 10.938 Atomic orbital electron populations 1.21753 0.94596 1.02006 1.01905 1.21587 0.96777 0.95207 1.01408 1.21902 0.94599 0.96678 0.97863 0.93691 1.22370 0.97318 0.98398 0.96150 1.22462 0.95019 0.97674 1.00720 1.22305 0.97978 0.98590 0.96153 1.21787 0.94432 0.98133 0.95461 0.93225 1.19029 0.94682 0.93708 0.92374 1.21652 0.94205 1.30929 1.10218 0.92343 1.25981 1.03320 0.95045 0.95714 1.70099 1.37570 1.34452 1.15526 0.85556 0.79603 0.78534 0.77706 1.19176 1.20869 1.19247 0.93675 0.91738 0.91595 0.93800 0.91131 0.89932 0.91310 0.93677 0.89928 0.93616 0.91274 0.99486 1.00217 0.92936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 9.77 71.98 0.70 -2.70 16 2 C -0.11 -3.27 5.06 30.59 0.15 -3.12 16 3 C -0.09 -3.21 2.58 -10.07 -0.03 -3.24 16 4 H 0.04 1.76 7.67 -2.39 -0.02 1.74 16 5 C -0.11 -2.99 5.53 31.67 0.18 -2.81 16 6 C -0.12 -3.87 6.91 31.88 0.22 -3.65 16 7 C -0.11 -4.28 6.19 31.67 0.20 -4.08 16 8 C -0.08 -3.39 2.53 -10.07 -0.03 -3.42 16 9 H 0.05 2.14 7.67 -2.38 -0.02 2.12 16 10 C 0.04 2.15 4.16 29.85 0.12 2.27 16 11 C -0.53 -31.12 8.16 25.60 0.21 -30.91 16 12 H 0.06 3.28 7.72 -2.91 -0.02 3.26 16 13 C 0.00 -0.21 5.46 84.65 0.46 0.26 16 14 N -0.94 -58.70 13.29 21.44 0.28 -58.42 16 15 Si 0.96 45.43 29.54 68.60 2.03 47.46 16 16 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 17 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 18 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 19 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 20 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 21 H 0.07 1.36 7.51 -2.38 -0.02 1.34 16 22 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.07 1.85 8.00 -2.39 -0.02 1.83 16 24 H 0.08 1.97 7.76 -2.39 -0.02 1.96 16 25 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.04 1.59 8.14 -2.39 -0.02 1.58 16 27 H 0.08 2.14 8.14 -2.38 -0.02 2.13 16 28 H 0.04 1.99 7.15 -2.39 -0.02 1.97 16 29 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 30 H -0.01 -0.79 8.14 -2.38 -0.02 -0.81 16 31 H -0.02 -1.24 8.14 -2.39 -0.02 -1.26 16 32 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -64.77 255.56 5.55 -59.23 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: 1.04 Total: 3.12 kcal Atomic # 6 Polarization: -53.58 SS G_CDS: 2.19 Total: -51.39 kcal Atomic # 7 Polarization: -58.70 SS G_CDS: 0.28 Total: -58.42 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -64.77 5.55 -59.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261144223.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.090 kcal (2) G-P(sol) polarization free energy of solvation -64.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds