Wall clock time and date at job start Thu Apr 9 2020 13:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46902 * 109.47117 * 2 1 4 4 C 1.50707 * 109.46866 * 240.00368 * 2 1 3 5 5 H 1.08002 * 119.99572 * 239.99506 * 4 2 1 6 6 C 1.37873 * 120.00075 * 59.99621 * 4 2 1 7 7 N 1.31507 * 120.00047 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99863 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47203 * 90.00145 * 8 6 4 10 10 H 1.48501 * 109.46780 * 210.00369 * 8 6 4 11 11 H 1.48502 * 109.46992 * 330.00027 * 8 6 4 12 12 C 1.52994 * 109.47506 * 120.00009 * 2 1 3 13 13 C 1.54882 * 110.75982 * 294.66999 * 12 2 1 14 14 C 1.54460 * 104.10671 * 203.89036 * 13 12 2 15 15 C 1.53874 * 106.68302 * 23.34316 * 14 13 12 16 16 C 1.54266 * 106.59904 * 0.15870 * 15 14 13 17 17 H 1.09006 * 109.46374 * 294.19609 * 1 2 3 18 18 H 1.08995 * 109.47185 * 174.19914 * 1 2 3 19 19 H 1.08996 * 109.46877 * 54.18946 * 1 2 3 20 20 H 1.00897 * 111.00040 * 56.05084 * 3 2 1 21 21 H 1.00904 * 110.99879 * 180.02562 * 3 2 1 22 22 H 0.97004 * 120.00526 * 179.97438 * 7 6 4 23 23 H 1.09007 * 110.67032 * 57.90858 * 12 2 1 24 24 H 1.08995 * 110.48869 * 322.42280 * 13 12 2 25 25 H 1.09004 * 110.48684 * 85.05969 * 13 12 2 26 26 H 1.08996 * 109.86095 * 264.10225 * 14 13 12 27 27 H 1.08997 * 110.16789 * 142.74952 * 14 13 12 28 28 H 1.09003 * 110.03498 * 240.87426 * 15 14 13 29 29 H 1.09002 * 110.07599 * 119.46518 * 15 14 13 30 30 H 1.08999 * 110.48958 * 217.71450 * 16 15 14 31 31 H 1.09003 * 110.48932 * 95.06571 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6533 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0081 9 1 1.3426 -2.1616 -4.4120 10 1 2.4864 -0.1412 -5.1123 11 1 3.6292 -1.7583 -3.7124 12 6 2.0401 -0.7212 1.2492 13 6 1.6532 0.0590 2.5300 14 6 2.6970 -0.3922 3.5753 15 6 3.9246 -0.8852 2.7895 16 6 3.5884 -0.7137 1.2937 17 1 -0.3632 0.4212 0.9375 18 1 -0.3633 -1.0223 -0.1039 19 1 -0.3633 0.6013 -0.8334 20 1 1.6442 1.9013 0.7814 21 1 3.0284 1.4119 -0.0004 22 1 0.7093 1.1619 -3.4843 23 1 1.6575 -1.7412 1.2877 24 1 1.7262 1.1330 2.3591 25 1 0.6467 -0.2095 2.8508 26 1 2.2898 -1.2032 4.1790 27 1 2.9748 0.4456 4.2148 28 1 4.1132 -1.9355 3.0117 29 1 4.7986 -0.2867 3.0467 30 1 3.9907 -1.5448 0.7145 31 1 3.9760 0.2347 0.9218 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084328489.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:36 Heat of formation + Delta-G solvation = -14.666766 kcal Electronic energy + Delta-G solvation = -11862.870342 eV Core-core repulsion = 9950.422567 eV Total energy + Delta-G solvation = -1912.447775 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.24236 -34.27549 -31.34428 -28.25887 -27.79579 -26.55150 -24.89436 -20.93666 -19.66529 -18.03664 -16.00215 -15.15111 -14.87211 -14.13328 -13.93176 -13.02661 -12.70812 -12.36275 -11.85057 -11.12773 -10.90006 -10.81359 -10.69620 -10.50677 -10.37696 -10.19665 -9.92818 -9.86721 -9.61433 -9.21749 -8.63559 -8.24956 -6.83575 -5.71753 -3.87880 3.38288 3.45593 3.48051 4.55605 5.25107 5.26971 5.29696 5.47954 5.95888 6.09937 6.11366 6.20554 6.22955 6.33987 6.43033 6.50618 6.60837 6.78176 6.86287 6.97009 7.12809 7.22758 7.31457 7.48443 7.95925 8.16063 8.49510 8.84027 9.18227 9.34193 9.80227 11.28029 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.056729 B = 0.013772 C = 0.012230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.458469 B = 2032.653973 C = 2288.813564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.252 3.748 3 N -0.808 5.808 4 C -0.522 4.522 5 H 0.050 0.950 6 C 0.084 3.916 7 N -0.847 5.847 8 Si 0.877 3.123 9 H -0.284 1.284 10 H -0.289 1.289 11 H -0.277 1.277 12 C -0.110 4.110 13 C -0.125 4.125 14 C -0.123 4.123 15 C -0.127 4.127 16 C -0.108 4.108 17 H 0.004 0.996 18 H 0.027 0.973 19 H 0.085 0.915 20 H 0.294 0.706 21 H 0.316 0.684 22 H 0.251 0.749 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.623 -1.495 8.044 8.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.160 3.840 3 N -0.337 5.337 4 C -0.561 4.561 5 H 0.068 0.932 6 C -0.122 4.122 7 N -0.482 5.482 8 Si 0.705 3.295 9 H -0.210 1.210 10 H -0.215 1.215 11 H -0.202 1.202 12 C -0.131 4.131 13 C -0.163 4.163 14 C -0.160 4.160 15 C -0.165 4.165 16 C -0.146 4.146 17 H 0.023 0.977 18 H 0.046 0.954 19 H 0.104 0.896 20 H 0.106 0.894 21 H 0.129 0.871 22 H 0.062 0.938 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.154 -1.283 7.197 7.621 hybrid contribution 0.812 -0.808 0.080 1.149 sum 2.965 -2.091 7.276 8.131 Atomic orbital electron populations 1.21751 0.97716 0.99556 0.99269 1.18281 0.91531 0.84547 0.89602 1.59243 1.11237 1.15787 1.47478 1.20885 1.33218 1.11857 0.90114 0.93166 1.24912 0.94659 0.94342 0.98267 1.70045 1.34882 1.21331 1.21939 0.86883 0.79227 0.79514 0.83878 1.21024 1.21469 1.20228 1.22961 0.94341 0.99508 0.96324 1.22515 0.97468 1.00387 0.95911 1.22155 0.96320 0.99667 0.97882 1.22195 0.97216 0.99952 0.97104 1.22264 0.97221 1.01625 0.93449 0.97719 0.95353 0.89592 0.89411 0.87119 0.93831 0.92241 0.92000 0.92660 0.92871 0.92970 0.92858 0.92967 0.92215 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.03 8.34 37.16 0.31 -2.72 16 2 C 0.25 6.01 0.36 -132.75 -0.05 5.96 16 3 N -0.81 -18.83 8.01 -0.19 0.00 -18.83 16 4 C -0.52 -14.09 7.66 -34.44 -0.26 -14.35 16 5 H 0.05 1.36 7.25 -52.49 -0.38 0.98 16 6 C 0.08 2.32 5.23 -17.82 -0.09 2.22 16 7 N -0.85 -24.24 10.87 55.43 0.60 -23.64 16 8 Si 0.88 21.41 29.54 -169.99 -5.02 16.39 16 9 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 C -0.11 -2.25 2.23 -88.63 -0.20 -2.45 16 13 C -0.13 -2.18 5.33 -24.97 -0.13 -2.31 16 14 C -0.12 -1.84 6.81 -25.51 -0.17 -2.02 16 15 C -0.13 -1.97 6.80 -25.61 -0.17 -2.14 16 16 C -0.11 -2.02 5.53 -25.07 -0.14 -2.16 16 17 H 0.00 0.08 7.10 -51.93 -0.37 -0.28 16 18 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 19 H 0.09 2.33 6.25 -51.93 -0.32 2.01 16 20 H 0.29 6.23 6.90 -39.29 -0.27 5.96 16 21 H 0.32 7.14 6.90 -39.29 -0.27 6.87 16 22 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 23 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 24 H 0.06 1.08 5.97 -51.93 -0.31 0.77 16 25 H 0.05 0.94 7.87 -51.93 -0.41 0.53 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 1.16 7.80 -51.93 -0.41 0.76 16 31 H 0.06 1.21 6.04 -51.93 -0.31 0.90 16 LS Contribution 237.28 15.07 3.58 3.58 Total: -1.00 -27.99 237.28 -6.48 -34.47 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -4.72 Total: 8.01 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: -0.91 Total: -19.97 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 0.60 Total: -42.48 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -27.99 -6.48 -34.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084328489.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.802 kcal (2) G-P(sol) polarization free energy of solvation -27.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds