Wall clock time and date at job start Thu Apr 9 2020 13:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 N 1.46902 * 109.46626 * 179.97438 * 3 2 1 5 5 C 1.47434 * 111.00091 * 69.87375 * 4 3 2 6 6 C 1.54325 * 107.23276 * 123.25545 * 5 4 3 7 7 C 1.55141 * 103.01679 * 22.28467 * 6 5 4 8 8 H 1.08995 * 110.99191 * 82.44010 * 7 6 5 9 9 C 1.50703 * 110.98779 * 206.21803 * 7 6 5 10 10 H 1.08001 * 120.00103 * 118.54612 * 9 7 6 11 11 C 1.37881 * 119.99811 * 298.54706 * 9 7 6 12 12 N 1.31509 * 120.00012 * 359.97438 * 11 9 7 13 13 Si 1.86807 * 119.99623 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47067 * 59.99835 * 13 11 9 15 15 H 1.48503 * 109.46773 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.46947 * 299.99772 * 13 11 9 17 17 C 1.47846 * 110.99766 * 190.71621 * 4 3 2 18 18 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 19 19 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 20 20 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 21 21 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 22 22 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 23 23 H 1.09000 * 109.47050 * 299.99699 * 3 2 1 24 24 H 1.09001 * 109.46801 * 59.99811 * 3 2 1 25 25 H 1.09001 * 109.89078 * 242.65466 * 5 4 3 26 26 H 1.09002 * 109.89332 * 3.85001 * 5 4 3 27 27 H 1.09002 * 110.70551 * 140.66271 * 6 5 4 28 28 H 1.08997 * 110.70481 * 263.89992 * 6 5 4 29 29 H 0.96999 * 119.99776 * 180.02562 * 12 11 9 30 30 H 1.09003 * 110.37517 * 332.47008 * 17 4 3 31 31 H 1.09007 * 110.37420 * 94.80283 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5089 1.4426 0.0006 5 6 4.0378 0.9688 -1.2914 6 6 4.9565 2.0788 -1.8441 7 6 5.3448 2.8769 -0.5716 8 1 6.1700 2.3964 -0.0461 9 6 5.6841 4.3050 -0.9127 10 1 5.1005 5.1129 -0.4967 11 6 6.7398 4.5802 -1.7559 12 7 7.4508 3.5965 -2.2621 13 14 7.1608 6.3506 -2.1781 14 1 7.4929 7.0906 -0.9342 15 1 8.3283 6.3763 -3.0955 16 1 5.9964 6.9920 -2.8399 17 6 4.0386 2.7988 0.2573 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8899 21 1 1.8934 -0.5138 -0.8899 22 1 1.8933 -0.5138 0.8900 23 1 1.6765 1.9564 -0.8900 24 1 1.6764 1.9564 0.8900 25 1 4.6102 0.0529 -1.1444 26 1 3.2163 0.7881 -1.9847 27 1 5.8410 1.6487 -2.3141 28 1 4.4153 2.7128 -2.5465 29 1 8.1936 3.7901 -2.8550 30 1 3.3287 3.5538 -0.0809 31 1 4.2540 2.9277 1.3181 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084426718.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:39 Heat of formation + Delta-G solvation = -33.845881 kcal Electronic energy + Delta-G solvation = -11320.306016 eV Core-core repulsion = 9407.026572 eV Total energy + Delta-G solvation = -1913.279444 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.82830 -35.84565 -34.24533 -31.32868 -30.01005 -27.12219 -25.45340 -22.74384 -21.49427 -20.98602 -18.46719 -16.94776 -16.67960 -16.11859 -15.50089 -14.80805 -14.31742 -14.13458 -13.62158 -13.37295 -13.02549 -12.95714 -12.76216 -12.51457 -12.31615 -12.04217 -11.67717 -11.50623 -11.49943 -11.10471 -10.90809 -10.50968 -9.16586 -8.15217 -6.26625 1.40769 1.42447 1.50245 2.41208 3.14440 3.21533 4.01614 4.09962 4.19521 4.38728 4.46045 4.55967 4.65471 4.71165 4.80362 4.85069 4.96595 5.04198 5.20991 5.23877 5.27744 5.37308 5.46877 5.57392 5.79304 5.89849 6.05896 6.34708 6.35856 6.82427 7.41387 8.93838 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.086200 B = 0.009020 C = 0.008640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 324.747680 B = 3103.461208 C = 3239.946662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.114 4.114 3 C 0.049 3.951 4 N -0.540 5.540 5 C 0.049 3.951 6 C -0.109 4.109 7 C 0.037 3.963 8 H 0.003 0.997 9 C -0.537 4.537 10 H 0.055 0.945 11 C 0.013 3.987 12 N -0.918 5.918 13 Si 0.958 3.042 14 H -0.269 1.269 15 H -0.283 1.283 16 H -0.271 1.271 17 C 0.058 3.942 18 H 0.052 0.948 19 H 0.067 0.933 20 H 0.059 0.941 21 H 0.056 0.944 22 H 0.066 0.934 23 H 0.025 0.975 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.057 0.943 27 H 0.048 0.952 28 H 0.031 0.969 29 H 0.262 0.738 30 H 0.033 0.967 31 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.369 -4.406 2.258 11.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.152 4.152 3 C -0.079 4.079 4 N -0.265 5.265 5 C -0.079 4.079 6 C -0.148 4.148 7 C 0.018 3.982 8 H 0.022 0.978 9 C -0.576 4.576 10 H 0.073 0.927 11 C -0.186 4.186 12 N -0.557 5.557 13 Si 0.783 3.217 14 H -0.194 1.194 15 H -0.208 1.208 16 H -0.196 1.196 17 C -0.070 4.070 18 H 0.071 0.929 19 H 0.086 0.914 20 H 0.078 0.922 21 H 0.075 0.925 22 H 0.084 0.916 23 H 0.043 0.957 24 H 0.092 0.908 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.075 -4.787 2.545 11.442 hybrid contribution 0.403 1.446 -1.026 1.818 sum -9.672 -3.342 1.519 10.345 Atomic orbital electron populations 1.21704 0.94072 1.02449 1.02013 1.21479 0.96483 0.95003 1.02220 1.22388 0.86946 0.98259 1.00301 1.63616 1.08258 1.23354 1.31227 1.22808 0.97508 0.97977 0.89563 1.22478 0.97482 0.96079 0.98753 1.19697 0.91886 0.94594 0.92037 0.97839 1.21376 1.14778 0.92687 1.28737 0.92684 1.25794 0.95835 1.01252 0.95709 1.70086 1.19955 1.33023 1.32631 0.85614 0.77701 0.80116 0.78248 1.19443 1.20839 1.19602 1.22943 0.96362 0.88209 0.99445 0.92860 0.91350 0.92172 0.92550 0.91550 0.95677 0.90777 0.91379 0.92469 0.93292 0.94994 0.92933 0.94821 0.91632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.91 71.98 0.71 -2.07 16 2 C -0.11 -2.85 5.96 30.60 0.18 -2.67 16 3 C 0.05 1.52 4.54 86.31 0.39 1.91 16 4 N -0.54 -20.84 5.16 -885.53 -4.57 -25.41 16 5 C 0.05 1.95 6.21 86.65 0.54 2.48 16 6 C -0.11 -5.34 5.64 31.78 0.18 -5.16 16 7 C 0.04 1.94 2.96 -10.16 -0.03 1.91 16 8 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 9 C -0.54 -30.37 8.55 25.60 0.22 -30.15 16 10 H 0.05 3.03 7.79 -2.91 -0.02 3.00 16 11 C 0.01 0.75 5.34 84.66 0.45 1.20 16 12 N -0.92 -54.20 12.12 21.45 0.26 -53.94 16 13 Si 0.96 44.00 29.54 68.60 2.03 46.02 16 14 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 15 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 16 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 17 C 0.06 2.53 6.13 86.77 0.53 3.07 16 18 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 19 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 20 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 21 H 0.06 1.45 7.14 -2.39 -0.02 1.43 16 22 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 23 H 0.02 0.80 7.96 -2.39 -0.02 0.78 16 24 H 0.07 2.15 8.07 -2.39 -0.02 2.13 16 25 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 26 H 0.06 2.02 6.91 -2.39 -0.02 2.00 16 27 H 0.05 2.59 7.53 -2.39 -0.02 2.57 16 28 H 0.03 1.61 8.03 -2.39 -0.02 1.59 16 29 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 30 H 0.03 1.47 7.70 -2.39 -0.02 1.45 16 31 H 0.07 2.77 8.14 -2.38 -0.02 2.75 16 Total: -1.00 -60.23 249.82 1.96 -58.27 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: 1.06 Total: 4.54 kcal Atomic # 6 Polarization: -32.66 SS G_CDS: 3.18 Total: -29.48 kcal Atomic # 7 Polarization: -75.04 SS G_CDS: -4.31 Total: -79.34 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -60.23 1.96 -58.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084426718.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.420 kcal (2) G-P(sol) polarization free energy of solvation -60.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds