Wall clock time and date at job start Thu Apr 9 2020 13:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47360 * 2 1 4 4 H 1.09003 * 110.43841 * 303.91383 * 3 2 1 5 5 C 1.54627 * 110.49130 * 181.22673 * 3 2 1 6 6 C 1.54482 * 101.76763 * 216.52886 * 5 3 2 7 7 N 1.46762 * 105.47272 * 25.41257 * 6 5 3 8 8 C 1.37101 * 124.34626 * 163.00766 * 7 6 5 9 9 H 1.07999 * 119.99511 * 154.17128 * 8 7 6 10 10 C 1.38944 * 119.99949 * 334.17085 * 8 7 6 11 11 N 1.31415 * 119.99888 * 151.86727 * 10 8 7 12 12 Si 1.86801 * 120.00360 * 331.87241 * 10 8 7 13 13 H 1.48494 * 109.47313 * 94.98945 * 12 10 8 14 14 H 1.48502 * 109.46728 * 214.99651 * 12 10 8 15 15 H 1.48499 * 109.46653 * 334.98755 * 12 10 8 16 16 C 1.34415 * 111.30087 * 342.98645 * 7 6 5 17 17 O 1.21298 * 124.93873 * 180.37066 * 16 7 6 18 18 H 1.08994 * 109.47200 * 299.99825 * 1 2 3 19 19 H 1.08999 * 109.47031 * 179.97438 * 1 2 3 20 20 H 1.09007 * 109.46768 * 60.00268 * 1 2 3 21 21 H 1.08997 * 109.47090 * 120.00176 * 2 1 3 22 22 H 1.09005 * 109.47631 * 239.99960 * 2 1 3 23 23 H 1.09003 * 110.96753 * 334.64426 * 5 3 2 24 24 H 1.08997 * 110.97369 * 98.40266 * 5 3 2 25 25 H 1.08998 * 110.24123 * 266.41124 * 6 5 3 26 26 H 1.08992 * 110.31915 * 144.45588 * 6 5 3 27 27 H 0.96993 * 120.00355 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6296 1.9913 -0.8476 5 6 3.5857 1.4700 -0.0310 6 6 3.8974 2.6842 0.8718 7 7 2.7417 2.8132 1.7672 8 6 2.7422 3.5375 2.9313 9 1 1.8170 3.9385 3.3180 10 6 3.9329 3.7557 3.6133 11 7 4.0779 4.8309 4.3548 12 14 5.3277 2.5207 3.4761 13 1 6.2694 2.9536 2.4127 14 1 6.0475 2.4411 4.7726 15 1 4.7747 1.1856 3.1342 16 6 1.6828 2.1303 1.2992 17 8 0.5986 2.0734 1.8402 18 1 -0.3633 0.5138 0.8899 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 -0.8901 21 1 1.8933 -0.5138 0.8899 22 1 1.8934 -0.5138 -0.8900 23 1 4.0007 0.5542 0.3901 24 1 3.9528 1.6329 -1.0443 25 1 4.0088 3.5846 0.2676 26 1 4.8039 2.5037 1.4494 27 1 4.9092 4.9834 4.8307 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716540003.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:11 Heat of formation + Delta-G solvation = -32.790795 kcal Electronic energy + Delta-G solvation = -11483.355488 eV Core-core repulsion = 9434.288701 eV Total energy + Delta-G solvation = -2049.066787 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 183.100 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.57985 -35.26880 -34.30911 -32.28971 -29.82399 -26.52964 -24.94285 -21.96000 -21.22021 -18.66532 -17.18288 -16.15886 -15.61371 -14.35177 -13.96087 -13.48006 -13.13392 -12.94611 -12.60778 -12.22455 -11.82155 -11.75918 -11.24203 -11.12591 -10.80513 -10.52091 -10.30647 -10.20220 -9.78342 -9.07940 -8.24438 -7.89135 -6.48578 -3.90435 3.00508 3.19600 3.24318 3.73440 4.11411 4.58619 4.94246 5.04700 5.10237 5.19928 5.57868 5.74543 5.75978 5.87662 6.13572 6.14036 6.19303 6.27916 6.35023 6.44580 6.66068 6.92455 7.44690 8.12607 8.45745 8.92555 9.25548 9.87230 10.63983 Molecular weight = 183.10amu Principal moments of inertia in cm(-1) A = 0.056894 B = 0.015435 C = 0.013553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.025023 B = 1813.662074 C = 2065.465576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.097 4.097 3 C -0.121 4.121 4 H 0.092 0.908 5 C -0.131 4.131 6 C 0.084 3.916 7 N -0.462 5.462 8 C -0.318 4.318 9 H 0.110 0.890 10 C 0.060 3.940 11 N -0.853 5.853 12 Si 0.874 3.126 13 H -0.274 1.274 14 H -0.287 1.287 15 H -0.265 1.265 16 C 0.464 3.536 17 O -0.564 6.564 18 H 0.087 0.913 19 H 0.043 0.957 20 H 0.045 0.955 21 H 0.060 0.940 22 H 0.058 0.942 23 H 0.075 0.925 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.943 -7.096 -9.099 11.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.136 4.136 3 C -0.143 4.143 4 H 0.111 0.889 5 C -0.168 4.168 6 C -0.040 4.040 7 N -0.183 5.183 8 C -0.444 4.444 9 H 0.128 0.872 10 C -0.146 4.146 11 N -0.489 5.489 12 Si 0.702 3.298 13 H -0.201 1.201 14 H -0.214 1.214 15 H -0.190 1.190 16 C 0.252 3.748 17 O -0.448 6.448 18 H 0.106 0.894 19 H 0.062 0.938 20 H 0.064 0.936 21 H 0.079 0.921 22 H 0.077 0.923 23 H 0.093 0.907 24 H 0.099 0.901 25 H 0.086 0.914 26 H 0.077 0.923 27 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.529 -6.928 -8.601 11.149 hybrid contribution 1.065 -0.467 0.033 1.164 sum 2.594 -7.394 -8.567 11.610 Atomic orbital electron populations 1.21939 0.95413 1.00731 1.03839 1.21269 0.96748 0.94299 1.01236 1.21897 0.95604 0.97878 0.98955 0.88947 1.22667 0.95470 0.98635 1.00070 1.22206 0.91213 0.97878 0.92654 1.44034 1.10575 1.43811 1.19840 1.19015 0.97208 1.28924 0.99266 0.87240 1.25198 0.97646 0.95696 0.96110 1.69847 1.26977 1.22174 1.29895 0.87009 0.82008 0.83691 0.77121 1.20118 1.21377 1.18977 1.20288 0.85677 0.81464 0.87390 1.90483 1.24232 1.65006 1.65030 0.89426 0.93831 0.93553 0.92127 0.92309 0.90671 0.90054 0.91400 0.92274 0.91481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 9.70 37.16 0.36 -2.23 15 2 C -0.10 -1.55 5.35 -26.73 -0.14 -1.69 15 3 C -0.12 -2.18 2.98 -90.63 -0.27 -2.45 15 4 H 0.09 1.50 8.14 -51.93 -0.42 1.08 15 5 C -0.13 -2.11 6.70 -25.10 -0.17 -2.28 15 6 C 0.08 1.72 6.35 -3.12 -0.02 1.70 15 7 N -0.46 -11.71 2.75 -113.62 -0.31 -12.02 15 8 C -0.32 -9.24 10.02 -14.93 -0.15 -9.39 15 9 H 0.11 3.53 8.05 -52.49 -0.42 3.10 15 10 C 0.06 1.68 5.35 -17.47 -0.09 1.59 15 11 N -0.85 -24.71 13.96 55.50 0.77 -23.93 15 12 Si 0.87 20.62 24.96 -169.99 -4.24 16.38 15 13 H -0.27 -6.02 6.78 56.52 0.38 -5.63 15 14 H -0.29 -6.74 7.11 56.52 0.40 -6.34 15 15 H -0.26 -6.23 7.11 56.52 0.40 -5.83 15 16 C 0.46 11.22 7.37 -10.86 -0.08 11.14 15 17 O -0.56 -15.43 15.12 5.54 0.08 -15.34 15 18 H 0.09 1.71 5.70 -51.93 -0.30 1.42 15 19 H 0.04 0.60 8.14 -51.93 -0.42 0.17 15 20 H 0.05 0.67 8.14 -51.92 -0.42 0.25 15 21 H 0.06 1.02 8.14 -51.93 -0.42 0.59 15 22 H 0.06 0.75 8.14 -51.93 -0.42 0.33 15 23 H 0.07 1.16 7.91 -51.93 -0.41 0.75 15 24 H 0.08 1.02 8.14 -51.93 -0.42 0.59 15 25 H 0.07 1.29 8.14 -51.93 -0.42 0.86 15 26 H 0.06 1.25 2.82 -51.93 -0.15 1.11 15 27 H 0.27 7.32 8.31 -40.82 -0.34 6.98 15 LS Contribution 221.38 15.07 3.34 3.34 Total: -1.00 -31.44 221.38 -4.31 -35.75 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -3.39 Total: -0.56 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -0.56 Total: -3.61 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.46 Total: -35.96 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: 0.08 Total: -15.34 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.24 Total: 16.38 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -31.44 -4.31 -35.75 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716540003.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.962 kcal (2) G-P(sol) polarization free energy of solvation -31.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds