Wall clock time and date at job start Thu Apr 9 2020 13:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47360 * 2 1 4 4 H 1.09003 * 110.43841 * 303.91383 * 3 2 1 5 5 C 1.54627 * 110.49130 * 181.22673 * 3 2 1 6 6 C 1.54482 * 101.76763 * 216.52886 * 5 3 2 7 7 N 1.46762 * 105.47272 * 25.41257 * 6 5 3 8 8 C 1.37101 * 124.34626 * 163.00766 * 7 6 5 9 9 H 1.07999 * 119.99511 * 154.17128 * 8 7 6 10 10 C 1.38944 * 119.99949 * 334.17085 * 8 7 6 11 11 N 1.31415 * 119.99888 * 151.86727 * 10 8 7 12 12 Si 1.86801 * 120.00360 * 331.87241 * 10 8 7 13 13 H 1.48494 * 109.47313 * 94.98945 * 12 10 8 14 14 H 1.48502 * 109.46728 * 214.99651 * 12 10 8 15 15 H 1.48499 * 109.46653 * 334.98755 * 12 10 8 16 16 C 1.34415 * 111.30087 * 342.98645 * 7 6 5 17 17 O 1.21298 * 124.93873 * 180.37066 * 16 7 6 18 18 H 1.08994 * 109.47200 * 299.99825 * 1 2 3 19 19 H 1.08999 * 109.47031 * 179.97438 * 1 2 3 20 20 H 1.09007 * 109.46768 * 60.00268 * 1 2 3 21 21 H 1.08997 * 109.47090 * 120.00176 * 2 1 3 22 22 H 1.09005 * 109.47631 * 239.99960 * 2 1 3 23 23 H 1.09003 * 110.96753 * 334.64426 * 5 3 2 24 24 H 1.08997 * 110.97369 * 98.40266 * 5 3 2 25 25 H 1.08998 * 110.24123 * 266.41124 * 6 5 3 26 26 H 1.08992 * 110.31915 * 144.45588 * 6 5 3 27 27 H 0.96993 * 120.00355 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6296 1.9913 -0.8476 5 6 3.5857 1.4700 -0.0310 6 6 3.8974 2.6842 0.8718 7 7 2.7417 2.8132 1.7672 8 6 2.7422 3.5375 2.9313 9 1 1.8170 3.9385 3.3180 10 6 3.9329 3.7557 3.6133 11 7 4.0779 4.8309 4.3548 12 14 5.3277 2.5207 3.4761 13 1 6.2694 2.9536 2.4127 14 1 6.0475 2.4411 4.7726 15 1 4.7747 1.1856 3.1342 16 6 1.6828 2.1303 1.2992 17 8 0.5986 2.0734 1.8402 18 1 -0.3633 0.5138 0.8899 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 -0.8901 21 1 1.8933 -0.5138 0.8899 22 1 1.8934 -0.5138 -0.8900 23 1 4.0007 0.5542 0.3901 24 1 3.9528 1.6329 -1.0443 25 1 4.0088 3.5846 0.2676 26 1 4.8039 2.5037 1.4494 27 1 4.9092 4.9834 4.8307 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716540003.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:11 Heat of formation + Delta-G solvation = -55.318663 kcal Electronic energy + Delta-G solvation = -11484.332369 eV Core-core repulsion = 9434.288701 eV Total energy + Delta-G solvation = -2050.043668 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 183.100 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.29923 -37.18301 -35.90703 -34.22461 -31.40622 -28.13230 -26.86585 -23.30962 -22.80072 -20.41714 -19.16180 -17.92048 -17.33612 -16.21035 -15.63514 -15.07982 -14.94683 -14.39652 -14.19392 -13.92332 -13.54023 -13.32179 -12.77679 -12.63500 -12.51374 -12.04357 -11.88615 -11.67060 -11.42356 -10.98183 -10.09216 -9.88657 -8.62937 -6.11269 1.14753 1.28317 1.41796 1.88501 2.12785 2.74815 3.00752 3.57859 3.66909 3.87988 4.28496 4.41053 4.43844 4.53874 4.69232 4.81679 5.01042 5.02355 5.14086 5.18045 5.41029 5.42899 5.61605 5.90367 6.42792 6.89169 7.18662 7.91155 8.55158 Molecular weight = 183.10amu Principal moments of inertia in cm(-1) A = 0.056894 B = 0.015435 C = 0.013553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.025023 B = 1813.662074 C = 2065.465576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.095 4.095 3 C -0.111 4.111 4 H 0.116 0.884 5 C -0.113 4.113 6 C 0.071 3.929 7 N -0.482 5.482 8 C -0.349 4.349 9 H 0.047 0.953 10 C 0.015 3.985 11 N -0.898 5.898 12 Si 0.951 3.049 13 H -0.236 1.236 14 H -0.285 1.285 15 H -0.262 1.262 16 C 0.445 3.555 17 O -0.613 6.613 18 H 0.041 0.959 19 H 0.065 0.935 20 H 0.060 0.940 21 H 0.046 0.954 22 H 0.107 0.893 23 H 0.088 0.912 24 H 0.134 0.866 25 H 0.081 0.919 26 H 0.056 0.944 27 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.305 -9.280 -11.885 15.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.133 4.133 3 C -0.132 4.132 4 H 0.134 0.866 5 C -0.151 4.151 6 C -0.051 4.051 7 N -0.203 5.203 8 C -0.476 4.476 9 H 0.065 0.935 10 C -0.189 4.189 11 N -0.535 5.535 12 Si 0.774 3.226 13 H -0.161 1.161 14 H -0.211 1.211 15 H -0.186 1.186 16 C 0.235 3.765 17 O -0.499 6.499 18 H 0.060 0.940 19 H 0.084 0.916 20 H 0.079 0.921 21 H 0.065 0.935 22 H 0.125 0.875 23 H 0.107 0.893 24 H 0.152 0.848 25 H 0.099 0.901 26 H 0.074 0.926 27 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.907 -9.104 -11.416 15.115 hybrid contribution 0.195 0.299 0.938 1.004 sum 4.102 -8.806 -10.477 14.288 Atomic orbital electron populations 1.21897 0.96107 1.01710 1.02230 1.21341 0.96192 0.92946 1.02834 1.21956 0.97527 0.98553 0.95173 0.86617 1.22788 0.93441 0.96911 1.01935 1.22551 0.89061 1.00895 0.92593 1.44251 1.12897 1.43671 1.19445 1.18641 0.95653 1.30939 1.02350 0.93532 1.26051 1.00587 0.97025 0.95230 1.69937 1.28581 1.23907 1.31035 0.85803 0.78382 0.80090 0.78309 1.16068 1.21140 1.18611 1.21652 0.84610 0.80856 0.89403 1.90453 1.26168 1.66280 1.67032 0.94007 0.91595 0.92139 0.93525 0.87465 0.89327 0.84750 0.90071 0.92598 0.90677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.86 9.70 71.98 0.70 -4.17 15 2 C -0.10 -2.65 5.35 30.59 0.16 -2.49 15 3 C -0.11 -3.59 2.98 -10.80 -0.03 -3.62 15 4 H 0.12 3.26 8.14 -2.39 -0.02 3.24 15 5 C -0.11 -3.03 6.70 31.65 0.21 -2.82 15 6 C 0.07 2.70 6.35 86.83 0.55 3.25 15 7 N -0.48 -24.65 2.75 -631.98 -1.74 -26.39 15 8 C -0.35 -21.36 10.02 84.04 0.84 -20.52 15 9 H 0.05 3.31 8.05 -2.91 -0.02 3.29 15 10 C 0.01 0.84 5.35 84.92 0.45 1.29 15 11 N -0.90 -53.70 13.96 21.66 0.30 -53.40 15 12 Si 0.95 41.93 24.96 68.60 1.71 43.64 15 13 H -0.24 -8.97 6.78 99.48 0.67 -8.30 15 14 H -0.28 -12.36 7.11 99.48 0.71 -11.65 15 15 H -0.26 -11.32 7.11 99.48 0.71 -10.61 15 16 C 0.44 21.72 7.37 87.90 0.65 22.36 15 17 O -0.61 -35.30 15.12 -3.09 -0.05 -35.34 15 18 H 0.04 1.65 5.70 -2.39 -0.01 1.64 15 19 H 0.07 1.64 8.14 -2.39 -0.02 1.62 15 20 H 0.06 1.60 8.14 -2.38 -0.02 1.59 15 21 H 0.05 1.43 8.14 -2.39 -0.02 1.41 15 22 H 0.11 2.04 8.14 -2.38 -0.02 2.02 15 23 H 0.09 2.19 7.91 -2.39 -0.02 2.17 15 24 H 0.13 2.28 8.14 -2.39 -0.02 2.26 15 25 H 0.08 2.82 8.14 -2.39 -0.02 2.80 15 26 H 0.06 2.15 2.82 -2.39 -0.01 2.14 15 27 H 0.28 15.35 8.31 -92.71 -0.77 14.57 15 Total: -1.00 -74.90 221.38 4.89 -70.01 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: 1.12 Total: 8.18 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: 3.54 Total: -6.71 kcal Atomic # 7 Polarization: -78.35 SS G_CDS: -1.44 Total: -79.79 kcal Atomic # 8 Polarization: -35.30 SS G_CDS: -0.05 Total: -35.34 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 1.71 Total: 43.64 kcal Total: -74.90 4.89 -70.01 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716540003.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.692 kcal (2) G-P(sol) polarization free energy of solvation -74.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds