Wall clock time and date at job start Thu Apr 9 2020 13:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99849 * 180.02562 * 10 9 7 12 12 C 1.53006 * 119.80559 * 250.22824 * 11 10 9 13 13 C 1.53002 * 60.65343 * 247.69210 * 12 11 10 14 14 H 1.09000 * 119.80367 * 112.31349 * 13 12 11 15 15 C 1.54480 * 118.06580 * 269.59053 * 13 12 11 16 16 O 1.44428 * 104.80103 * 86.82903 * 15 13 12 17 17 C 1.46766 * 105.42308 * 319.29113 * 16 15 13 18 18 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 19 19 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 20 20 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 21 21 H 1.00899 * 111.00084 * 303.95478 * 10 9 7 22 22 H 1.08996 * 117.43644 * 355.37348 * 12 11 10 23 23 H 1.09001 * 117.42931 * 140.06905 * 12 11 10 24 24 H 1.08996 * 110.37291 * 205.66045 * 15 13 12 25 25 H 1.09001 * 110.37648 * 327.88972 * 15 13 12 26 26 H 1.09002 * 110.29278 * 282.46674 * 17 16 15 27 27 H 1.09004 * 111.53805 * 159.38461 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 1.5053 -4.9070 -0.0011 12 6 1.5371 -5.7901 1.2480 13 6 2.2581 -6.2562 -0.0184 14 1 3.3464 -6.3171 -0.0309 15 6 1.4675 -7.1144 -1.0308 16 8 0.8054 -6.1582 -1.8871 17 6 0.3358 -5.0931 -0.9932 18 1 -0.4850 0.8401 0.0004 19 1 0.6247 -2.5571 0.8897 20 1 0.6240 -2.5568 -0.8903 21 1 2.8405 -3.5487 -0.7819 22 1 2.1533 -5.4569 2.0830 23 1 0.6173 -6.3076 1.5206 24 1 2.1469 -7.7377 -1.6120 25 1 0.7349 -7.7335 -0.5130 26 1 -0.5628 -5.4118 -0.4649 27 1 0.1490 -4.1673 -1.5374 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718102993.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:15 Heat of formation + Delta-G solvation = -12.745581 kcal Electronic energy + Delta-G solvation = -11036.591422 eV Core-core repulsion = 8988.393861 eV Total energy + Delta-G solvation = -2048.197561 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 183.100 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.80526 -35.06016 -33.44845 -31.67468 -27.94479 -26.09791 -25.03810 -22.15769 -20.61127 -19.15556 -16.83737 -15.80230 -15.24332 -14.78512 -14.67716 -13.93647 -13.59347 -12.91013 -12.46306 -12.03378 -11.88621 -11.32771 -10.85741 -10.84046 -10.73268 -10.28699 -9.98366 -9.77300 -9.29237 -9.06757 -8.51734 -7.42532 -6.06723 -4.09172 3.32493 3.36175 3.39292 3.80609 4.20810 4.40037 4.77637 4.81517 5.10559 5.25887 5.29603 5.39645 5.58951 5.77613 5.95489 6.01190 6.15773 6.28946 6.38978 6.87153 7.19543 7.35106 7.73432 8.07508 8.29103 8.52896 8.98941 9.55699 11.04296 Molecular weight = 183.10amu Principal moments of inertia in cm(-1) A = 0.080417 B = 0.009243 C = 0.008944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 348.102591 B = 3028.651859 C = 3129.718422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.058 3.942 3 Si 0.901 3.099 4 H -0.287 1.287 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.062 0.938 9 C 0.196 3.804 10 N -0.644 5.644 11 C 0.014 3.986 12 C -0.119 4.119 13 C -0.205 4.205 14 H 0.119 0.881 15 C 0.075 3.925 16 O -0.383 6.383 17 C 0.051 3.949 18 H 0.263 0.737 19 H 0.030 0.970 20 H -0.007 1.007 21 H 0.334 0.666 22 H 0.106 0.894 23 H 0.088 0.912 24 H 0.090 0.910 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.899 -10.656 -0.090 10.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.729 3.271 4 H -0.213 1.213 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.080 0.920 9 C 0.070 3.930 10 N -0.274 5.274 11 C -0.080 4.080 12 C -0.158 4.158 13 C -0.224 4.224 14 H 0.137 0.863 15 C -0.002 4.002 16 O -0.302 6.302 17 C -0.027 4.027 18 H 0.072 0.928 19 H 0.049 0.951 20 H 0.010 0.990 21 H 0.152 0.848 22 H 0.124 0.876 23 H 0.106 0.894 24 H 0.108 0.892 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.802 -10.497 0.343 10.656 hybrid contribution 0.145 0.968 -0.611 1.154 sum 1.947 -9.529 -0.268 9.730 Atomic orbital electron populations 1.69949 1.06087 1.27033 1.50529 1.24978 0.94897 0.99386 0.95162 0.86508 0.79409 0.82496 0.78684 1.21282 1.20130 1.20213 1.21124 0.93523 0.90157 1.50913 0.91974 1.19602 0.90654 0.86707 0.96064 1.60535 1.19747 0.98976 1.48177 1.23286 0.95938 0.89452 0.99293 1.23165 1.01099 0.99552 0.91936 1.24345 0.99843 0.97596 1.00568 0.86289 1.22806 0.94683 0.91310 0.91398 1.89495 1.75238 1.34097 1.31356 1.23874 0.95478 0.91626 0.91716 0.92756 0.95145 0.98955 0.84799 0.87572 0.89361 0.89156 0.92549 0.91883 0.87489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.70 13.29 55.43 0.74 -25.96 15 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 15 3 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 15 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 15 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 7 C -0.52 -14.74 9.32 -34.44 -0.32 -15.06 15 8 H 0.06 1.73 7.81 -52.49 -0.41 1.32 15 9 C 0.20 5.13 5.10 -4.98 -0.03 5.10 15 10 N -0.64 -14.20 6.82 -99.62 -0.68 -14.88 15 11 C 0.01 0.26 3.05 -130.03 -0.40 -0.14 15 12 C -0.12 -1.85 10.05 -26.73 -0.27 -2.12 15 13 C -0.20 -3.07 7.21 -89.05 -0.64 -3.71 15 14 H 0.12 1.68 8.14 -51.93 -0.42 1.26 15 15 C 0.08 1.04 7.45 37.93 0.28 1.33 15 16 O -0.38 -6.74 11.72 -35.23 -0.41 -7.16 15 17 C 0.05 0.93 7.12 37.93 0.27 1.20 15 18 H 0.26 7.39 8.31 -40.82 -0.34 7.05 15 19 H 0.03 0.86 8.14 -51.92 -0.42 0.44 15 20 H -0.01 -0.20 6.26 -51.93 -0.33 -0.52 15 21 H 0.33 7.18 8.81 -39.29 -0.35 6.83 15 22 H 0.11 1.65 8.14 -51.93 -0.42 1.23 15 23 H 0.09 1.20 8.14 -51.93 -0.42 0.78 15 24 H 0.09 1.06 8.14 -51.93 -0.42 0.63 15 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 15 26 H 0.06 1.05 8.14 -51.93 -0.42 0.62 15 27 H 0.11 2.16 6.17 -51.93 -0.32 1.84 15 LS Contribution 231.79 15.07 3.49 3.49 Total: -1.00 -30.05 231.79 -6.58 -36.63 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -3.50 Total: 3.06 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -1.20 Total: -11.86 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: 0.06 Total: -40.84 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -0.41 Total: -7.16 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -30.05 -6.58 -36.63 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718102993.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.884 kcal (2) G-P(sol) polarization free energy of solvation -30.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds