Wall clock time and date at job start Thu Apr 9 2020 13:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99849 * 180.02562 * 10 9 7 12 12 C 1.53006 * 119.80559 * 250.22824 * 11 10 9 13 13 C 1.53002 * 60.65343 * 247.69210 * 12 11 10 14 14 H 1.09000 * 119.80367 * 112.31349 * 13 12 11 15 15 C 1.54480 * 118.06580 * 269.59053 * 13 12 11 16 16 O 1.44428 * 104.80103 * 86.82903 * 15 13 12 17 17 C 1.46766 * 105.42308 * 319.29113 * 16 15 13 18 18 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 19 19 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 20 20 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 21 21 H 1.00899 * 111.00084 * 303.95478 * 10 9 7 22 22 H 1.08996 * 117.43644 * 355.37348 * 12 11 10 23 23 H 1.09001 * 117.42931 * 140.06905 * 12 11 10 24 24 H 1.08996 * 110.37291 * 205.66045 * 15 13 12 25 25 H 1.09001 * 110.37648 * 327.88972 * 15 13 12 26 26 H 1.09002 * 110.29278 * 282.46674 * 17 16 15 27 27 H 1.09004 * 111.53805 * 159.38461 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 1.5053 -4.9070 -0.0011 12 6 1.5371 -5.7901 1.2480 13 6 2.2581 -6.2562 -0.0184 14 1 3.3464 -6.3171 -0.0309 15 6 1.4675 -7.1144 -1.0308 16 8 0.8054 -6.1582 -1.8871 17 6 0.3358 -5.0931 -0.9932 18 1 -0.4850 0.8401 0.0004 19 1 0.6247 -2.5571 0.8897 20 1 0.6240 -2.5568 -0.8903 21 1 2.8405 -3.5487 -0.7819 22 1 2.1533 -5.4569 2.0830 23 1 0.6173 -6.3076 1.5206 24 1 2.1469 -7.7377 -1.6120 25 1 0.7349 -7.7335 -0.5130 26 1 -0.5628 -5.4118 -0.4649 27 1 0.1490 -4.1673 -1.5374 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718102993.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:15 Heat of formation + Delta-G solvation = -35.087793 kcal Electronic energy + Delta-G solvation = -11037.560253 eV Core-core repulsion = 8988.393861 eV Total energy + Delta-G solvation = -2049.166392 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 183.100 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.13682 -36.68025 -35.22898 -33.56322 -29.39161 -28.05708 -26.32707 -24.14224 -21.87921 -20.64986 -18.74901 -17.42096 -16.70281 -16.58655 -16.14501 -15.52690 -15.10422 -14.56544 -14.00877 -13.74110 -13.47047 -13.11109 -12.71610 -12.59243 -12.16705 -12.06471 -11.53782 -11.27678 -11.14981 -10.66827 -10.43444 -9.22037 -8.24785 -6.36489 1.40687 1.44193 1.52304 2.37943 2.51422 2.89962 3.08814 3.31875 3.53857 3.79401 3.97804 4.11955 4.37230 4.53376 4.69711 4.75106 4.80594 4.95783 5.13220 5.20822 5.26019 5.57244 5.62507 5.98930 6.35750 6.64004 6.82625 7.34235 8.86522 Molecular weight = 183.10amu Principal moments of inertia in cm(-1) A = 0.080417 B = 0.009243 C = 0.008944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 348.102591 B = 3028.651859 C = 3129.718422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.975 3.025 4 H -0.281 1.281 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.214 3.786 10 N -0.644 5.644 11 C -0.035 4.035 12 C -0.107 4.107 13 C -0.174 4.174 14 H 0.131 0.869 15 C 0.071 3.929 16 O -0.401 6.401 17 C 0.057 3.943 18 H 0.266 0.734 19 H 0.001 0.999 20 H -0.029 1.029 21 H 0.333 0.667 22 H 0.105 0.895 23 H 0.111 0.889 24 H 0.118 0.882 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.913 -11.533 0.192 11.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.195 4.195 3 Si 0.799 3.201 4 H -0.206 1.206 5 H -0.193 1.193 6 H -0.192 1.192 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.087 3.913 10 N -0.273 5.273 11 C -0.128 4.128 12 C -0.145 4.145 13 C -0.193 4.193 14 H 0.149 0.851 15 C -0.005 4.005 16 O -0.320 6.320 17 C -0.021 4.021 18 H 0.075 0.925 19 H 0.019 0.981 20 H -0.012 1.012 21 H 0.151 0.849 22 H 0.123 0.877 23 H 0.129 0.871 24 H 0.136 0.864 25 H 0.098 0.902 26 H 0.095 0.905 27 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.827 -11.407 0.627 11.769 hybrid contribution -0.171 1.136 -0.703 1.347 sum 2.656 -10.271 -0.075 10.609 Atomic orbital electron populations 1.70078 1.07779 1.28192 1.51117 1.25941 0.95805 1.03351 0.94364 0.85361 0.78110 0.77523 0.79151 1.20642 1.19256 1.19185 1.21516 0.93820 0.91504 1.51264 0.91858 1.19184 0.90581 0.87997 0.93554 1.60377 1.19134 0.99666 1.48119 1.23473 0.97716 0.89206 1.02436 1.23281 1.02152 0.97810 0.91276 1.24509 1.00594 0.94294 0.99877 0.85070 1.23133 0.95479 0.90671 0.91260 1.89475 1.75702 1.34546 1.32308 1.23657 0.96135 0.90940 0.91348 0.92492 0.98052 1.01188 0.84928 0.87679 0.87094 0.86431 0.90174 0.90451 0.90729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.51 13.29 21.45 0.28 -56.23 15 2 C 0.00 0.23 5.46 84.66 0.46 0.69 15 3 Si 0.97 44.48 29.54 68.60 2.03 46.51 15 4 H -0.28 -12.46 7.11 99.48 0.71 -11.76 15 5 H -0.27 -11.80 7.11 99.48 0.71 -11.09 15 6 H -0.27 -11.70 7.11 99.48 0.71 -11.00 15 7 C -0.54 -31.42 9.32 25.60 0.24 -31.18 15 8 H 0.06 3.56 7.81 -2.91 -0.02 3.53 15 9 C 0.21 11.64 5.10 85.55 0.44 12.08 15 10 N -0.64 -28.78 6.82 -469.10 -3.20 -31.97 15 11 C -0.04 -1.29 3.05 4.55 0.01 -1.27 15 12 C -0.11 -3.09 10.05 30.60 0.31 -2.78 15 13 C -0.17 -4.74 7.21 -9.78 -0.07 -4.81 15 14 H 0.13 3.28 8.14 -2.39 -0.02 3.26 15 15 C 0.07 1.73 7.45 72.49 0.54 2.27 15 16 O -0.40 -13.56 11.72 -148.98 -1.75 -15.31 15 17 C 0.06 2.09 7.12 72.49 0.52 2.61 15 18 H 0.27 15.14 8.31 -92.71 -0.77 14.37 15 19 H 0.00 0.08 8.14 -2.38 -0.02 0.06 15 20 H -0.03 -1.70 6.26 -2.39 -0.01 -1.72 15 21 H 0.33 14.55 8.81 -89.69 -0.79 13.76 15 22 H 0.10 3.06 8.14 -2.39 -0.02 3.04 15 23 H 0.11 2.67 8.14 -2.39 -0.02 2.65 15 24 H 0.12 2.26 8.14 -2.39 -0.02 2.24 15 25 H 0.08 1.63 8.14 -2.39 -0.02 1.61 15 26 H 0.08 2.54 8.14 -2.39 -0.02 2.52 15 27 H 0.07 3.17 6.17 -2.38 -0.01 3.16 15 Total: -1.00 -64.94 231.79 0.18 -64.75 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 0.37 Total: 14.64 kcal Atomic # 6 Polarization: -24.84 SS G_CDS: 2.44 Total: -22.40 kcal Atomic # 7 Polarization: -85.29 SS G_CDS: -2.91 Total: -88.20 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -1.75 Total: -15.31 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -64.94 0.18 -64.75 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718102993.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.667 kcal (2) G-P(sol) polarization free energy of solvation -64.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds