Wall clock time and date at job start Thu Apr 9 2020 13:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99776 * 2 1 4 4 H 1.48497 * 109.47050 * 240.00017 * 3 2 1 5 5 H 1.48496 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46855 * 119.99997 * 3 2 1 7 7 C 1.38811 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99701 * 179.73016 * 7 2 1 9 9 N 1.36935 * 120.00369 * 359.97438 * 7 2 1 10 10 C 1.49544 * 126.23309 * 359.41936 * 9 7 2 11 11 C 1.50090 * 104.53470 * 187.49661 * 10 9 7 12 12 H 1.09004 * 109.95991 * 79.46149 * 11 10 9 13 13 C 1.50651 * 126.98765 * 216.62530 * 11 10 9 14 14 O 1.46112 * 102.43230 * 153.77098 * 13 11 10 15 15 C 1.45598 * 108.95136 * 334.45432 * 14 13 11 16 16 C 1.50165 * 105.09492 * 352.46320 * 15 14 13 17 17 H 1.09001 * 110.71375 * 279.49752 * 16 15 14 18 18 C 1.49918 * 126.23578 * 179.72923 * 9 7 2 19 19 H 0.97004 * 120.00382 * 359.97438 * 1 2 3 20 20 H 1.09003 * 110.42753 * 306.36332 * 10 9 7 21 21 H 1.08995 * 110.43301 * 68.85694 * 10 9 7 22 22 H 1.08999 * 110.81005 * 271.99909 * 13 11 10 23 23 H 1.08994 * 110.81591 * 35.53496 * 13 11 10 24 24 H 1.08999 * 110.31849 * 233.55932 * 15 14 13 25 25 H 1.09002 * 110.31763 * 111.37029 * 15 14 13 26 26 H 1.08998 * 110.95427 * 324.49119 * 18 9 7 27 27 H 1.09003 * 110.95619 * 88.21866 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0049 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1610 -2.5505 0.0122 11 6 -0.3773 -4.0243 0.1960 12 1 -0.2506 -4.2910 1.2453 13 6 -1.4599 -4.8662 -0.4275 14 8 -0.8493 -6.1933 -0.4561 15 6 0.5991 -6.0468 -0.4831 16 6 0.8401 -4.5752 -0.6599 17 1 0.7294 -4.2894 -1.7059 18 6 1.9297 -3.7601 -0.0068 19 1 -0.4851 0.8400 0.0004 20 1 -0.5974 -1.9941 0.8418 21 1 -0.5880 -2.2206 -0.9348 22 1 -2.3563 -4.8657 0.1926 23 1 -1.6855 -4.5218 -1.4367 24 1 1.0202 -6.6026 -1.3208 25 1 1.0319 -6.3911 0.4563 26 1 2.8425 -3.7814 -0.6022 27 1 2.1203 -4.1068 1.0089 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718250208.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:18 Heat of formation + Delta-G solvation = -17.194737 kcal Electronic energy + Delta-G solvation = -11459.317922 eV Core-core repulsion = 9410.927431 eV Total energy + Delta-G solvation = -2048.390491 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 183.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.35367 -37.42768 -34.36424 -31.52136 -31.12525 -27.45370 -27.29017 -23.68907 -21.53655 -21.08945 -18.81427 -17.94289 -16.72003 -16.26064 -15.77246 -15.61972 -15.00735 -14.54948 -13.95754 -13.38122 -13.16664 -13.05505 -12.64209 -12.39139 -12.19830 -11.89141 -11.74712 -11.72300 -11.03680 -10.77177 -10.52596 -8.98693 -7.87499 -5.23888 1.45738 1.49360 1.55646 2.46601 2.86864 2.93167 3.32087 3.42369 3.81950 4.15877 4.31410 4.38513 4.57288 4.66847 4.70714 4.79149 4.87228 4.95046 5.11794 5.32000 5.37176 5.55395 5.65744 5.74279 6.08248 7.00305 7.66126 8.35843 9.23939 Molecular weight = 183.10amu Principal moments of inertia in cm(-1) A = 0.092072 B = 0.011482 C = 0.010461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 304.036986 B = 2438.117265 C = 2676.048427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.069 4.069 3 Si 0.983 3.017 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.276 1.276 7 C -0.244 4.244 8 H 0.086 0.914 9 N -0.637 5.637 10 C 0.209 3.791 11 C -0.161 4.161 12 H 0.077 0.923 13 C 0.081 3.919 14 O -0.406 6.406 15 C 0.079 3.921 16 C -0.146 4.146 17 H 0.071 0.929 18 C 0.151 3.849 19 H 0.248 0.752 20 H 0.028 0.972 21 H 0.006 0.994 22 H 0.105 0.895 23 H 0.066 0.934 24 H 0.098 0.902 25 H 0.082 0.918 26 H 0.056 0.944 27 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.639 -9.051 -0.634 9.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.261 4.261 3 Si 0.810 3.190 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.202 1.202 7 C -0.373 4.373 8 H 0.103 0.897 9 N -0.365 5.365 10 C 0.085 3.915 11 C -0.180 4.180 12 H 0.095 0.905 13 C 0.005 3.995 14 O -0.326 6.326 15 C 0.003 3.997 16 C -0.166 4.166 17 H 0.090 0.910 18 C 0.027 3.973 19 H 0.057 0.943 20 H 0.046 0.954 21 H 0.024 0.976 22 H 0.123 0.877 23 H 0.084 0.916 24 H 0.116 0.884 25 H 0.100 0.900 26 H 0.075 0.925 27 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 0.512 -9.020 -0.634 9.057 hybrid contribution 0.368 1.480 0.013 1.525 sum 0.880 -7.540 -0.621 7.617 Atomic orbital electron populations 1.70143 1.06360 1.25507 1.58240 1.25687 0.96686 1.01112 1.02657 0.85094 0.77086 0.78525 0.78261 1.20249 1.22021 1.20214 1.19480 0.91120 0.83598 1.43113 0.89658 1.46251 1.01669 1.00914 1.87673 1.19956 0.83994 0.89564 0.97969 1.23102 0.97386 0.97322 1.00206 0.90472 1.22422 0.95195 0.81453 1.00443 1.89276 1.19266 1.27747 1.96345 1.22240 0.81148 0.93189 1.03143 1.22941 0.97987 0.95855 0.99782 0.91048 1.20998 0.94637 0.84020 0.97634 0.94296 0.95404 0.97627 0.87730 0.91581 0.88394 0.90032 0.92545 0.94333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.77 10.46 21.65 0.23 -57.55 15 2 C -0.07 -3.94 5.49 84.86 0.47 -3.47 15 3 Si 0.98 45.85 29.55 68.60 2.03 47.87 15 4 H -0.28 -12.41 7.11 99.48 0.71 -11.70 15 5 H -0.29 -13.80 7.11 99.48 0.71 -13.09 15 6 H -0.28 -12.39 7.11 99.48 0.71 -11.68 15 7 C -0.24 -13.83 10.34 84.03 0.87 -12.96 15 8 H 0.09 4.56 7.83 -2.91 -0.02 4.54 15 9 N -0.64 -33.22 3.50 -694.18 -2.43 -35.65 15 10 C 0.21 10.46 5.23 84.85 0.44 10.90 15 11 C -0.16 -6.11 2.97 -10.45 -0.03 -6.14 15 12 H 0.08 2.92 8.12 -2.38 -0.02 2.90 15 13 C 0.08 2.57 7.62 71.22 0.54 3.11 15 14 O -0.41 -12.75 11.60 -148.98 -1.73 -14.48 15 15 C 0.08 2.20 7.62 71.07 0.54 2.74 15 16 C -0.15 -5.10 3.03 -10.34 -0.03 -5.13 15 17 H 0.07 2.68 8.14 -2.39 -0.02 2.66 15 18 C 0.15 6.07 7.11 85.04 0.60 6.68 15 19 H 0.25 14.61 8.31 -92.71 -0.77 13.84 15 20 H 0.03 1.56 7.13 -2.39 -0.02 1.54 15 21 H 0.01 0.30 7.91 -2.39 -0.02 0.29 15 22 H 0.10 2.89 8.14 -2.39 -0.02 2.87 15 23 H 0.07 2.07 8.14 -2.39 -0.02 2.06 15 24 H 0.10 2.26 8.14 -2.39 -0.02 2.24 15 25 H 0.08 2.04 8.14 -2.39 -0.02 2.02 15 26 H 0.06 2.14 8.14 -2.39 -0.02 2.12 15 27 H 0.04 1.48 8.14 -2.39 -0.02 1.46 15 Total: -1.00 -64.64 222.14 2.63 -62.00 By element: Atomic # 1 Polarization: 0.93 SS G_CDS: 1.14 Total: 2.06 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: 3.41 Total: -4.27 kcal Atomic # 7 Polarization: -90.99 SS G_CDS: -2.21 Total: -93.20 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: -1.73 Total: -14.48 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.87 kcal Total: -64.64 2.63 -62.00 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718250208.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.809 kcal (2) G-P(sol) polarization free energy of solvation -64.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds