Wall clock time and date at job start Thu Apr 9 2020 13:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30276 * 126.28250 * 2 1 4 4 N 1.28674 * 109.37873 * 179.97438 * 3 2 1 5 5 C 1.30272 * 109.38187 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.28028 * 180.02562 * 5 4 3 7 7 N 1.46495 * 109.47139 * 89.97288 * 6 5 4 8 8 C 1.36940 * 119.99909 * 179.97438 * 7 6 5 9 9 H 1.08003 * 120.00250 * 0.02562 * 8 7 6 10 10 C 1.38816 * 119.99879 * 179.97438 * 8 7 6 11 11 N 1.31617 * 119.99639 * 180.02562 * 10 8 7 12 12 Si 1.86801 * 120.00019 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47115 * 89.99827 * 12 10 8 14 14 H 1.48504 * 109.47050 * 209.99684 * 12 10 8 15 15 H 1.48501 * 109.46838 * 329.99375 * 12 10 8 16 16 O 1.34364 * 107.43764 * 359.97438 * 5 4 3 17 17 H 1.08997 * 109.47444 * 90.01974 * 1 2 3 18 18 H 1.09002 * 109.46698 * 210.02579 * 1 2 3 19 19 H 1.09002 * 109.47090 * 330.01523 * 1 2 3 20 20 H 1.09006 * 109.47243 * 209.97514 * 6 5 4 21 21 H 1.09004 * 109.47210 * 329.97528 * 6 5 4 22 22 H 0.97000 * 120.00263 * 0.02562 * 7 6 5 23 23 H 0.97005 * 119.99884 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5091 0.6760 0.0005 5 6 3.5654 -0.6255 0.0004 6 6 4.8176 -1.4639 0.0014 7 7 5.2225 -1.7352 1.3829 8 6 6.3408 -2.4846 1.6340 9 1 6.9246 -2.8753 0.8136 10 6 6.7247 -2.7413 2.9431 11 7 7.7998 -3.4612 3.1844 12 14 5.7155 -2.0651 4.3621 13 1 4.6690 -3.0493 4.7384 14 1 6.6030 -1.8166 5.5265 15 1 5.0722 -0.7919 3.9494 16 8 2.3021 -1.0832 0.0002 17 1 -0.3634 -0.0004 -1.0276 18 1 -0.3633 -0.8898 0.5143 19 1 -0.3633 0.8901 0.5136 20 1 4.6248 -2.4057 -0.5124 21 1 5.6151 -0.9265 -0.5120 22 1 4.6980 -1.3847 2.1198 23 1 8.0679 -3.6409 4.0992 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719103341.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:21 Heat of formation + Delta-G solvation = 52.669318 kcal Electronic energy + Delta-G solvation = -10614.996554 eV Core-core repulsion = 8466.095252 eV Total energy + Delta-G solvation = -2148.901302 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.075 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -44.00110 -35.94567 -35.36738 -32.87329 -31.43696 -28.83047 -26.20598 -23.02151 -22.40743 -21.62784 -18.14073 -17.21227 -16.70775 -14.86306 -14.71875 -14.61922 -13.52420 -13.24535 -13.00837 -12.87544 -12.44227 -12.19192 -11.67981 -11.47070 -10.97578 -10.74772 -10.29011 -9.72747 -9.33434 -9.09402 -7.46649 -5.89162 -3.29413 1.31431 2.46208 2.56324 3.32079 3.36794 3.39874 4.00966 4.49564 4.57868 4.97175 5.10927 5.30071 5.34724 5.43147 5.54702 5.66769 5.81893 6.13718 6.22144 7.77869 8.26817 8.50699 9.00529 9.73624 9.89167 11.27722 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.064531 B = 0.010525 C = 0.009796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.794292 B = 2659.661712 C = 2857.764448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.145 3.855 3 N -0.293 5.293 4 N -0.283 5.283 5 C 0.175 3.825 6 C 0.250 3.750 7 N -0.748 5.748 8 C -0.256 4.256 9 H 0.098 0.902 10 C 0.015 3.985 11 N -0.925 5.925 12 Si 0.882 3.118 13 H -0.282 1.282 14 H -0.286 1.286 15 H -0.277 1.277 16 O -0.222 6.222 17 H 0.096 0.904 18 H 0.091 0.909 19 H 0.103 0.897 20 H 0.064 0.936 21 H 0.080 0.920 22 H 0.365 0.635 23 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.009 4.455 -5.910 15.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.066 4.066 3 N -0.141 5.141 4 N -0.130 5.130 5 C -0.036 4.036 6 C 0.121 3.879 7 N -0.397 5.397 8 C -0.384 4.384 9 H 0.116 0.884 10 C -0.182 4.182 11 N -0.571 5.571 12 Si 0.711 3.289 13 H -0.208 1.208 14 H -0.212 1.212 15 H -0.203 1.203 16 O -0.101 6.101 17 H 0.114 0.886 18 H 0.110 0.890 19 H 0.122 0.878 20 H 0.081 0.919 21 H 0.098 0.902 22 H 0.198 0.802 23 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.409 5.536 -5.948 15.679 hybrid contribution -1.000 -0.731 1.147 1.688 sum -14.409 4.805 -4.802 15.930 Atomic orbital electron populations 1.20280 0.80535 1.05480 1.04894 1.27967 0.97860 0.80122 1.00696 1.74359 0.96388 1.25878 1.17480 1.74429 1.11655 1.09617 1.17306 1.28755 0.85367 0.91703 0.97814 1.19259 0.83683 0.94663 0.90249 1.42611 1.32263 1.64784 1.00002 1.18958 1.00827 1.24639 0.94017 0.88433 1.24627 0.97285 0.99409 0.96878 1.69686 1.25227 1.42388 1.19824 0.86590 0.80046 0.78957 0.83265 1.20818 1.21206 1.20333 1.84822 1.17883 1.38119 1.69281 0.88589 0.89030 0.87832 0.91850 0.90219 0.80154 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.45 10.51 36.00 0.38 -0.07 14 2 C 0.14 2.15 8.48 -12.94 -0.11 2.04 14 3 N -0.29 -5.26 12.22 32.55 0.40 -4.86 14 4 N -0.28 -5.66 12.22 32.55 0.40 -5.26 14 5 C 0.17 3.31 7.85 -12.94 -0.10 3.21 14 6 C 0.25 4.88 6.88 -5.20 -0.04 4.84 14 7 N -0.75 -18.08 5.40 -61.08 -0.33 -18.41 14 8 C -0.26 -7.12 10.47 -15.06 -0.16 -7.28 14 9 H 0.10 2.82 8.06 -52.48 -0.42 2.40 14 10 C 0.02 0.44 5.50 -17.43 -0.10 0.34 14 11 N -0.92 -28.53 13.97 55.49 0.78 -27.76 14 12 Si 0.88 22.22 27.74 -169.99 -4.71 17.50 14 13 H -0.28 -6.99 7.11 56.52 0.40 -6.59 14 14 H -0.29 -7.22 7.11 56.52 0.40 -6.82 14 15 H -0.28 -6.82 6.52 56.52 0.37 -6.46 14 16 O -0.22 -3.79 10.87 5.37 0.06 -3.73 14 17 H 0.10 0.59 8.14 -51.93 -0.42 0.16 14 18 H 0.09 0.62 8.14 -51.93 -0.42 0.19 14 19 H 0.10 0.71 8.14 -51.93 -0.42 0.29 14 20 H 0.06 1.14 8.14 -51.93 -0.42 0.71 14 21 H 0.08 1.50 8.14 -51.93 -0.42 1.07 14 22 H 0.37 8.94 5.52 -40.82 -0.23 8.72 14 23 H 0.26 7.70 8.31 -40.82 -0.34 7.36 14 LS Contribution 215.45 15.07 3.25 3.25 Total: -1.00 -32.93 215.45 -2.22 -35.15 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -1.93 Total: 1.05 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -0.12 Total: 3.08 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: 1.24 Total: -56.30 kcal Atomic # 8 Polarization: -3.79 SS G_CDS: 0.06 Total: -3.73 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.71 Total: 17.50 kcal Total LS contribution 3.25 Total: 3.25 kcal Total: -32.93 -2.22 -35.15 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719103341.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.822 kcal (2) G-P(sol) polarization free energy of solvation -32.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds