Wall clock time and date at job start Thu Apr 9 2020 13:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46808 * 2 1 4 4 H 1.08998 * 110.01578 * 304.07594 * 3 2 1 5 5 C 1.53812 * 109.88877 * 182.94738 * 3 2 1 6 6 C 1.51966 * 104.64022 * 223.51637 * 5 3 2 7 7 O 1.20762 * 127.92417 * 207.64351 * 6 5 3 8 8 C 1.51510 * 104.22454 * 27.45352 * 6 5 3 9 9 N 1.46853 * 106.84028 * 331.51654 * 8 6 5 10 10 C 1.36931 * 125.67184 * 198.44313 * 9 8 6 11 11 H 1.08004 * 119.99995 * 321.07023 * 10 9 8 12 12 C 1.38812 * 120.00385 * 140.80053 * 10 9 8 13 13 N 1.31618 * 120.00228 * 163.47173 * 12 10 9 14 14 Si 1.86798 * 120.00029 * 343.47190 * 12 10 9 15 15 H 1.48497 * 109.47449 * 95.12919 * 14 12 10 16 16 H 1.48500 * 109.47235 * 215.13624 * 14 12 10 17 17 H 1.48508 * 109.46975 * 335.13136 * 14 12 10 18 18 H 1.09000 * 109.46989 * 171.57655 * 1 2 3 19 19 H 1.08996 * 109.47035 * 291.57427 * 1 2 3 20 20 H 1.09001 * 109.47389 * 51.57532 * 1 2 3 21 21 H 1.09006 * 109.47055 * 240.00577 * 2 1 3 22 22 H 1.08996 * 109.47275 * 119.99913 * 2 1 3 23 23 H 1.08997 * 110.40984 * 342.30950 * 5 3 2 24 24 H 1.08998 * 110.40364 * 104.72897 * 5 3 2 25 25 H 1.08999 * 110.05276 * 212.10844 * 8 6 5 26 26 H 1.09005 * 109.85975 * 90.81405 * 8 6 5 27 27 H 0.97001 * 120.00291 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6233 1.9856 -0.8483 5 6 3.5762 1.4545 -0.0744 6 6 4.0016 2.5062 0.9368 7 8 5.0011 3.1838 0.9270 8 6 2.8827 2.5144 1.9583 9 7 1.6604 2.1067 1.2539 10 6 0.3796 2.3163 1.6904 11 1 0.1423 2.2110 2.7388 12 6 -0.6128 2.6697 0.7864 13 7 -1.8802 2.5563 1.1228 14 14 -0.1495 3.3061 -0.9076 15 1 -0.1624 2.1830 -1.8790 16 1 -1.1275 4.3396 -1.3327 17 1 1.2099 3.9019 -0.8578 18 1 -0.3633 -1.0166 -0.1505 19 1 -0.3633 0.3779 0.9556 20 1 -0.3634 0.6387 -0.8051 21 1 1.8934 -0.5138 -0.8901 22 1 1.8934 -0.5138 0.8900 23 1 3.9777 0.4791 0.2002 24 1 3.9061 1.7341 -1.0749 25 1 2.7596 3.5163 2.3697 26 1 3.1058 1.8076 2.7576 27 1 -2.5737 2.8036 0.4912 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885240037.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:28 Heat of formation + Delta-G solvation = -29.607734 kcal Electronic energy + Delta-G solvation = -11682.036571 eV Core-core repulsion = 9633.107812 eV Total energy + Delta-G solvation = -2048.928759 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 183.100 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.87765 -38.60286 -34.49839 -33.55692 -31.31580 -28.60117 -26.05706 -23.51307 -22.04377 -20.69747 -18.78276 -17.65723 -16.82716 -16.12952 -15.99698 -15.32243 -15.09574 -14.58359 -14.30989 -13.73955 -13.50477 -13.37548 -13.10732 -12.74892 -12.28798 -11.86250 -11.78059 -11.54146 -11.28682 -10.55712 -10.40071 -8.78396 -8.20470 -5.61291 0.81132 1.27428 1.38483 1.44610 2.38449 3.00988 3.13208 3.38701 3.71160 3.90715 4.08933 4.44051 4.57581 4.67169 4.81936 4.84930 4.89993 5.02720 5.16120 5.25764 5.52399 5.80240 6.02081 6.14325 6.38434 6.80267 7.50494 8.13109 8.97684 Molecular weight = 183.10amu Principal moments of inertia in cm(-1) A = 0.043974 B = 0.018817 C = 0.017261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.587310 B = 1487.689007 C = 1621.718218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.112 4.112 3 C 0.137 3.863 4 H 0.021 0.979 5 C -0.174 4.174 6 C 0.374 3.626 7 O -0.474 6.474 8 C 0.069 3.931 9 N -0.609 5.609 10 C -0.236 4.236 11 H 0.055 0.945 12 C 0.015 3.985 13 N -0.934 5.934 14 Si 0.923 3.077 15 H -0.260 1.260 16 H -0.311 1.311 17 H -0.275 1.275 18 H 0.046 0.954 19 H 0.070 0.930 20 H 0.025 0.975 21 H 0.079 0.921 22 H 0.070 0.930 23 H 0.144 0.856 24 H 0.108 0.892 25 H 0.060 0.940 26 H 0.086 0.914 27 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.564 -4.857 -3.699 10.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.151 4.151 3 C 0.032 3.968 4 H 0.039 0.961 5 C -0.212 4.212 6 C 0.251 3.749 7 O -0.349 6.349 8 C -0.057 4.057 9 N -0.337 5.337 10 C -0.365 4.365 11 H 0.072 0.928 12 C -0.184 4.184 13 N -0.577 5.577 14 Si 0.753 3.247 15 H -0.186 1.186 16 H -0.240 1.240 17 H -0.200 1.200 18 H 0.065 0.935 19 H 0.088 0.912 20 H 0.044 0.956 21 H 0.097 0.903 22 H 0.089 0.911 23 H 0.162 0.838 24 H 0.126 0.874 25 H 0.078 0.922 26 H 0.103 0.897 27 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.846 -4.468 -3.710 10.582 hybrid contribution -0.542 0.631 -0.715 1.097 sum 8.304 -3.837 -4.425 10.162 Atomic orbital electron populations 1.22062 0.96940 0.99398 1.03193 1.21799 0.95696 0.95534 1.02049 1.21355 0.92427 0.94005 0.89026 0.96126 1.23024 0.95210 1.01760 1.01193 1.25205 0.83593 0.79096 0.86963 1.90366 1.27977 1.41389 1.75183 1.21924 0.87370 1.00599 0.95775 1.44342 1.00855 1.65989 1.22536 1.18141 0.82402 1.41787 0.94142 0.92755 1.25768 0.94801 0.97210 1.00577 1.69872 0.99819 1.50632 1.37420 0.86372 0.76756 0.78355 0.83220 1.18647 1.24030 1.20021 0.93517 0.91158 0.95551 0.90292 0.91110 0.83826 0.87352 0.92234 0.89678 0.92593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.56 8.23 71.98 0.59 -5.96 15 2 C -0.11 -3.81 5.42 30.60 0.17 -3.64 15 3 C 0.14 5.15 2.47 45.19 0.11 5.27 15 4 H 0.02 0.89 3.67 -2.39 -0.01 0.88 15 5 C -0.17 -5.02 6.38 30.53 0.19 -4.83 15 6 C 0.37 12.79 8.08 29.77 0.24 13.03 15 7 O -0.47 -17.97 17.99 -1.46 -0.03 -17.99 15 8 C 0.07 2.57 7.10 85.82 0.61 3.17 15 9 N -0.61 -26.92 2.63 -677.52 -1.78 -28.70 15 10 C -0.24 -12.50 8.36 84.03 0.70 -11.80 15 11 H 0.05 3.18 8.06 -2.91 -0.02 3.15 15 12 C 0.02 0.82 3.38 84.86 0.29 1.11 15 13 N -0.93 -54.58 13.96 21.65 0.30 -54.28 15 14 Si 0.92 44.73 23.02 68.60 1.58 46.31 15 15 H -0.26 -11.82 6.10 99.48 0.61 -11.22 15 16 H -0.31 -15.52 7.11 99.48 0.71 -14.81 15 17 H -0.27 -13.21 6.91 99.48 0.69 -12.52 15 18 H 0.05 1.67 8.14 -2.39 -0.02 1.65 15 19 H 0.07 3.46 5.16 -2.39 -0.01 3.44 15 20 H 0.03 1.15 4.87 -2.39 -0.01 1.14 15 21 H 0.08 2.15 8.14 -2.38 -0.02 2.13 15 22 H 0.07 2.25 8.14 -2.39 -0.02 2.23 15 23 H 0.14 3.13 7.77 -2.39 -0.02 3.11 15 24 H 0.11 2.76 8.14 -2.39 -0.02 2.74 15 25 H 0.06 2.35 8.14 -2.39 -0.02 2.33 15 26 H 0.09 2.83 8.14 -2.38 -0.02 2.81 15 27 H 0.26 14.84 8.31 -92.71 -0.77 14.07 15 Total: -1.00 -61.19 213.85 4.02 -57.17 By element: Atomic # 1 Polarization: 0.10 SS G_CDS: 1.04 Total: 1.14 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: 2.90 Total: -3.65 kcal Atomic # 7 Polarization: -81.50 SS G_CDS: -1.48 Total: -82.98 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.03 Total: -17.99 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.58 Total: 46.31 kcal Total: -61.19 4.02 -57.17 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885240037.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.562 kcal (2) G-P(sol) polarization free energy of solvation -61.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds