Wall clock time and date at job start Thu Apr 9 2020 13:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46977 * 2 1 4 4 C 1.50701 * 109.46535 * 119.99745 * 2 1 3 5 5 H 1.07998 * 119.99900 * 120.00880 * 4 2 1 6 6 C 1.37882 * 120.00217 * 299.99473 * 4 2 1 7 7 N 1.31516 * 119.99770 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99840 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46913 * 60.00868 * 8 6 4 10 10 H 1.48505 * 109.46828 * 180.02562 * 8 6 4 11 11 H 1.48493 * 109.47358 * 300.00424 * 8 6 4 12 12 N 1.46895 * 109.47020 * 239.99604 * 2 1 3 13 13 C 1.46900 * 110.99924 * 85.00317 * 12 2 1 14 14 C 1.53786 * 113.61608 * 105.85932 * 13 12 2 15 15 C 1.54049 * 86.98426 * 140.01769 * 14 13 12 16 16 C 1.53002 * 113.62024 * 220.02020 * 15 14 13 17 17 C 1.53781 * 113.61428 * 203.46824 * 13 12 2 18 18 H 1.09001 * 109.46977 * 180.02562 * 1 2 3 19 19 H 1.09001 * 109.47119 * 300.00458 * 1 2 3 20 20 H 1.09001 * 109.46536 * 60.00380 * 1 2 3 21 21 H 0.96995 * 119.99484 * 180.02562 * 7 6 4 22 22 H 1.00897 * 111.00205 * 321.04601 * 12 2 1 23 23 H 1.09002 * 112.84869 * 334.66356 * 13 12 2 24 24 H 1.08992 * 113.61675 * 254.61513 * 14 13 12 25 25 H 1.09000 * 113.60973 * 25.51800 * 14 13 12 26 26 H 1.08996 * 113.68970 * 89.12734 * 15 14 13 27 27 H 1.09001 * 109.47020 * 157.49242 * 16 15 14 28 28 H 1.08999 * 109.47143 * 277.50161 * 16 15 14 29 29 H 1.09000 * 109.46828 * 37.49888 * 16 15 14 30 30 H 1.08999 * 113.61567 * 334.48132 * 17 13 12 31 31 H 1.08998 * 113.61196 * 105.38486 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9428 0.8299 2.6034 8 14 2.3223 -1.1194 4.0081 9 1 3.8073 -1.1188 4.0079 10 1 1.8267 -0.4197 5.2205 11 1 1.8278 -2.5196 4.0083 12 7 2.0197 -0.6926 -1.1994 13 6 2.0825 0.2225 -2.3468 14 6 3.5131 0.6470 -2.7187 15 6 3.0835 0.5110 -4.1918 16 6 4.1543 -0.1153 -5.0873 17 6 2.0221 -0.4910 -3.7077 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5139 0.8900 20 1 -0.3632 0.5138 -0.8901 21 1 0.7088 1.1615 3.4843 22 1 1.4496 -1.4980 -1.4099 23 1 1.3877 1.0579 -2.2606 24 1 3.7556 1.6684 -2.4256 25 1 4.2742 -0.0728 -2.4176 26 1 2.6622 1.4245 -4.6112 27 1 3.6832 -0.5430 -5.9723 28 1 4.8683 0.6507 -5.3900 29 1 4.6744 -0.8998 -4.5376 30 1 2.3764 -1.5214 -3.6767 31 1 1.0616 -0.3877 -4.2126 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128918484.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:22 Heat of formation + Delta-G solvation = 5.627010 kcal Electronic energy + Delta-G solvation = -11251.910015 eV Core-core repulsion = 9340.342244 eV Total energy + Delta-G solvation = -1911.567771 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -38.73941 -34.93855 -32.02169 -29.33827 -26.91920 -25.25725 -25.02987 -21.45549 -19.90781 -18.97719 -16.20457 -15.40129 -14.64665 -14.49698 -13.52158 -13.29433 -12.69382 -12.30680 -12.19049 -11.92927 -11.48154 -11.00510 -10.88816 -10.78512 -10.55322 -10.29286 -10.17907 -10.05848 -9.80738 -9.48380 -8.87708 -8.31458 -7.17001 -5.93847 -3.96888 3.37235 3.40747 3.44413 4.47908 4.90497 5.07529 5.09192 5.37487 5.40143 5.63105 5.74580 5.81969 5.92951 6.08824 6.15000 6.26212 6.32930 6.50543 6.73576 6.79259 6.86323 6.92144 7.17476 7.47282 7.79152 7.95550 8.35617 8.62710 8.70745 9.10421 9.68248 11.13310 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.070319 B = 0.009142 C = 0.008644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 398.088785 B = 3062.147971 C = 3238.384442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.210 3.790 3 H 0.033 0.967 4 C -0.494 4.494 5 H 0.061 0.939 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.673 5.673 13 C 0.063 3.937 14 C -0.120 4.120 15 C -0.120 4.120 16 C -0.137 4.137 17 C -0.140 4.140 18 H 0.027 0.973 19 H 0.088 0.912 20 H 0.004 0.996 21 H 0.259 0.741 22 H 0.325 0.675 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.083 0.917 31 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.206 -0.971 -10.515 10.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.102 3.898 3 H 0.051 0.949 4 C -0.533 4.533 5 H 0.079 0.921 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.204 1.204 12 N -0.302 5.302 13 C -0.048 4.048 14 C -0.158 4.158 15 C -0.139 4.139 16 C -0.195 4.195 17 C -0.178 4.178 18 H 0.046 0.954 19 H 0.106 0.894 20 H 0.023 0.977 21 H 0.069 0.931 22 H 0.142 0.858 23 H 0.078 0.922 24 H 0.074 0.926 25 H 0.104 0.896 26 H 0.099 0.901 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.791 -0.775 -10.187 10.590 hybrid contribution -0.763 -0.238 0.702 1.064 sum 2.028 -1.013 -9.484 9.751 Atomic orbital electron populations 1.22445 1.00855 0.99113 1.00371 1.19206 0.89453 0.94401 0.86757 0.94936 1.21148 1.30094 1.12365 0.89718 0.92059 1.24960 0.95392 0.95232 0.99023 1.69879 1.37403 1.23255 1.23358 0.86573 0.79172 0.79594 0.82096 1.20318 1.21475 1.20402 1.60916 1.57459 1.08643 1.03212 1.22855 0.96350 0.95792 0.89755 1.23153 0.98278 1.01013 0.93393 1.22416 0.96902 0.98697 0.95845 1.21684 0.98251 1.00386 0.99133 1.23254 0.98230 0.99151 0.97192 0.95399 0.89354 0.97732 0.93076 0.85778 0.92232 0.92562 0.89580 0.90063 0.93174 0.93139 0.92522 0.89827 0.92549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.17 8.93 37.16 0.33 -3.83 16 2 C 0.21 5.42 2.43 -68.86 -0.17 5.26 16 3 H 0.03 0.93 7.85 -51.93 -0.41 0.52 16 4 C -0.49 -14.03 8.84 -34.44 -0.30 -14.33 16 5 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 6 C 0.05 1.53 5.30 -17.82 -0.09 1.44 16 7 N -0.90 -26.26 11.32 55.43 0.63 -25.63 16 8 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 N -0.67 -14.72 6.28 -100.10 -0.63 -15.35 16 13 C 0.06 1.18 3.82 -66.90 -0.26 0.92 16 14 C -0.12 -2.02 7.45 -25.77 -0.19 -2.21 16 15 C -0.12 -1.65 4.37 -89.67 -0.39 -2.04 16 16 C -0.14 -1.61 9.71 37.16 0.36 -1.25 16 17 C -0.14 -2.10 7.23 -25.92 -0.19 -2.28 16 18 H 0.03 0.65 8.13 -51.93 -0.42 0.23 16 19 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 20 H 0.00 0.08 7.71 -51.93 -0.40 -0.32 16 21 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 22 H 0.32 6.76 8.30 -39.29 -0.33 6.43 16 23 H 0.06 1.17 7.48 -51.93 -0.39 0.78 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.09 1.51 7.97 -51.93 -0.41 1.10 16 26 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.68 7.95 -51.93 -0.41 0.27 16 30 H 0.08 1.24 8.10 -51.93 -0.42 0.81 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 252.92 15.07 3.81 3.81 Total: -1.00 -28.64 252.92 -7.28 -35.92 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -5.17 Total: 2.72 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: -0.90 Total: -18.33 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: 0.00 Total: -40.98 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -28.64 -7.28 -35.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128918484.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.544 kcal (2) G-P(sol) polarization free energy of solvation -28.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds