Wall clock time and date at job start Thu Apr 9 2020 13:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46977 * 2 1 4 4 C 1.50701 * 109.46535 * 119.99745 * 2 1 3 5 5 H 1.07998 * 119.99900 * 120.00880 * 4 2 1 6 6 C 1.37882 * 120.00217 * 299.99473 * 4 2 1 7 7 N 1.31516 * 119.99770 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99840 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46913 * 60.00868 * 8 6 4 10 10 H 1.48505 * 109.46828 * 180.02562 * 8 6 4 11 11 H 1.48493 * 109.47358 * 300.00424 * 8 6 4 12 12 N 1.46895 * 109.47020 * 239.99604 * 2 1 3 13 13 C 1.46900 * 110.99924 * 85.00317 * 12 2 1 14 14 C 1.53786 * 113.61608 * 105.85932 * 13 12 2 15 15 C 1.54049 * 86.98426 * 140.01769 * 14 13 12 16 16 C 1.53002 * 113.62024 * 220.02020 * 15 14 13 17 17 C 1.53781 * 113.61428 * 203.46824 * 13 12 2 18 18 H 1.09001 * 109.46977 * 180.02562 * 1 2 3 19 19 H 1.09001 * 109.47119 * 300.00458 * 1 2 3 20 20 H 1.09001 * 109.46536 * 60.00380 * 1 2 3 21 21 H 0.96995 * 119.99484 * 180.02562 * 7 6 4 22 22 H 1.00897 * 111.00205 * 321.04601 * 12 2 1 23 23 H 1.09002 * 112.84869 * 334.66356 * 13 12 2 24 24 H 1.08992 * 113.61675 * 254.61513 * 14 13 12 25 25 H 1.09000 * 113.60973 * 25.51800 * 14 13 12 26 26 H 1.08996 * 113.68970 * 89.12734 * 15 14 13 27 27 H 1.09001 * 109.47020 * 157.49242 * 16 15 14 28 28 H 1.08999 * 109.47143 * 277.50161 * 16 15 14 29 29 H 1.09000 * 109.46828 * 37.49888 * 16 15 14 30 30 H 1.08999 * 113.61567 * 334.48132 * 17 13 12 31 31 H 1.08998 * 113.61196 * 105.38486 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9428 0.8299 2.6034 8 14 2.3223 -1.1194 4.0081 9 1 3.8073 -1.1188 4.0079 10 1 1.8267 -0.4197 5.2205 11 1 1.8278 -2.5196 4.0083 12 7 2.0197 -0.6926 -1.1994 13 6 2.0825 0.2225 -2.3468 14 6 3.5131 0.6470 -2.7187 15 6 3.0835 0.5110 -4.1918 16 6 4.1543 -0.1153 -5.0873 17 6 2.0221 -0.4910 -3.7077 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5139 0.8900 20 1 -0.3632 0.5138 -0.8901 21 1 0.7088 1.1615 3.4843 22 1 1.4496 -1.4980 -1.4099 23 1 1.3877 1.0579 -2.2606 24 1 3.7556 1.6684 -2.4256 25 1 4.2742 -0.0728 -2.4176 26 1 2.6622 1.4245 -4.6112 27 1 3.6832 -0.5430 -5.9723 28 1 4.8683 0.6507 -5.3900 29 1 4.6744 -0.8998 -4.5376 30 1 2.3764 -1.5214 -3.6767 31 1 1.0616 -0.3877 -4.2126 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128918484.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:22 Heat of formation + Delta-G solvation = -12.323424 kcal Electronic energy + Delta-G solvation = -11252.688405 eV Core-core repulsion = 9340.342244 eV Total energy + Delta-G solvation = -1912.346160 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.10208 -36.81696 -34.00862 -30.79922 -28.52353 -27.24271 -26.49142 -22.99097 -21.74813 -20.27753 -18.30168 -16.90687 -16.53716 -16.05978 -15.16879 -14.71581 -14.10247 -13.95146 -13.79560 -13.23987 -13.18395 -12.84492 -12.80198 -12.47751 -12.16421 -12.09208 -11.86206 -11.54954 -11.30035 -10.96869 -10.77774 -10.48958 -8.94648 -8.09932 -6.21607 1.42504 1.44719 1.52516 2.43937 3.17944 3.67077 3.73382 3.83770 4.07582 4.20943 4.56127 4.65826 4.72657 4.85469 4.90610 4.95152 4.96970 5.05239 5.11673 5.19142 5.26485 5.43397 5.55312 5.64992 5.68990 5.87395 6.29227 6.68821 6.87526 6.96166 7.48730 8.95675 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.070319 B = 0.009142 C = 0.008644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 398.088785 B = 3062.147971 C = 3238.384442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.215 3.785 3 H -0.004 1.004 4 C -0.518 4.518 5 H 0.054 0.946 6 C 0.007 3.993 7 N -0.925 5.925 8 Si 0.962 3.038 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.270 1.270 12 N -0.676 5.676 13 C 0.045 3.955 14 C -0.126 4.126 15 C -0.103 4.103 16 C -0.134 4.134 17 C -0.126 4.126 18 H 0.033 0.967 19 H 0.061 0.939 20 H 0.023 0.977 21 H 0.261 0.739 22 H 0.331 0.669 23 H 0.046 0.954 24 H 0.048 0.952 25 H 0.076 0.924 26 H 0.094 0.906 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.088 0.912 31 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.528 -1.739 -11.560 11.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.107 3.893 3 H 0.014 0.986 4 C -0.556 4.556 5 H 0.073 0.927 6 C -0.191 4.191 7 N -0.565 5.565 8 Si 0.788 3.212 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.195 1.195 12 N -0.305 5.305 13 C -0.065 4.065 14 C -0.164 4.164 15 C -0.122 4.122 16 C -0.191 4.191 17 C -0.164 4.164 18 H 0.052 0.948 19 H 0.080 0.920 20 H 0.042 0.958 21 H 0.070 0.930 22 H 0.148 0.852 23 H 0.064 0.936 24 H 0.067 0.933 25 H 0.094 0.906 26 H 0.112 0.888 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.106 0.894 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.116 -1.548 -11.254 11.779 hybrid contribution -0.861 0.038 1.001 1.320 sum 2.255 -1.510 -10.253 10.606 Atomic orbital electron populations 1.22249 1.00066 0.99242 0.99922 1.18947 0.89943 0.92479 0.87968 0.98575 1.21462 1.30476 1.12504 0.91191 0.92731 1.25765 0.95453 0.95901 1.02010 1.70012 1.38075 1.24335 1.24061 0.85548 0.78617 0.78712 0.78341 1.19932 1.20873 1.19503 1.60818 1.57187 1.09226 1.03316 1.23056 0.97357 0.95619 0.90474 1.23170 0.96878 1.00197 0.96174 1.22359 0.96787 0.98972 0.94059 1.21660 0.97807 1.00513 0.99147 1.23186 0.99598 0.99300 0.94334 0.94818 0.92049 0.95819 0.92987 0.85153 0.93649 0.93322 0.90574 0.88777 0.91386 0.91966 0.93078 0.89398 0.90936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.73 8.93 71.98 0.64 -7.09 16 2 C 0.22 11.35 2.43 44.17 0.11 11.46 16 3 H 0.00 -0.22 7.85 -2.39 -0.02 -0.24 16 4 C -0.52 -29.73 8.84 25.60 0.23 -29.50 16 5 H 0.05 3.13 7.81 -2.91 -0.02 3.11 16 6 C 0.01 0.38 5.30 84.66 0.45 0.82 16 7 N -0.92 -54.71 11.32 21.45 0.24 -54.46 16 8 Si 0.96 44.86 29.54 68.60 2.03 46.89 16 9 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 12 N -0.68 -29.62 6.28 -470.60 -2.96 -32.57 16 13 C 0.05 1.66 3.82 45.44 0.17 1.83 16 14 C -0.13 -4.16 7.45 31.21 0.23 -3.92 16 15 C -0.10 -2.58 4.37 -10.18 -0.04 -2.63 16 16 C -0.13 -2.73 9.71 71.98 0.70 -2.03 16 17 C -0.13 -3.48 7.23 31.12 0.22 -3.26 16 18 H 0.03 1.58 8.13 -2.39 -0.02 1.56 16 19 H 0.06 3.40 6.07 -2.39 -0.01 3.38 16 20 H 0.02 1.04 7.71 -2.39 -0.02 1.02 16 21 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 22 H 0.33 13.57 8.30 -89.70 -0.74 12.83 16 23 H 0.05 1.79 7.48 -2.39 -0.02 1.77 16 24 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.08 2.65 7.97 -2.39 -0.02 2.64 16 26 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.05 1.10 7.95 -2.39 -0.02 1.08 16 30 H 0.09 2.38 8.10 -2.39 -0.02 2.36 16 31 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -61.03 252.92 2.36 -58.67 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 0.34 Total: 15.78 kcal Atomic # 6 Polarization: -37.02 SS G_CDS: 2.71 Total: -34.31 kcal Atomic # 7 Polarization: -84.32 SS G_CDS: -2.71 Total: -87.04 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -61.03 2.36 -58.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128918484.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.347 kcal (2) G-P(sol) polarization free energy of solvation -61.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds