Wall clock time and date at job start Thu Apr 9 2020 13:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47291 * 2 1 4 4 C 1.53006 * 109.47350 * 240.00229 * 2 1 3 5 5 N 1.46903 * 109.47152 * 120.00159 * 2 1 3 6 6 C 1.47957 * 110.99952 * 58.85713 * 5 2 1 7 7 C 1.53937 * 86.18033 * 222.41954 * 6 5 2 8 8 C 1.48184 * 111.06611 * 319.42226 * 5 2 1 9 9 H 1.08995 * 113.76061 * 23.24468 * 8 5 2 10 10 C 1.50698 * 113.82717 * 251.80881 * 8 5 2 11 11 H 1.07998 * 119.99640 * 3.99867 * 10 8 5 12 12 C 1.37879 * 120.00389 * 184.00362 * 10 8 5 13 13 N 1.31522 * 119.99498 * 359.97438 * 12 10 8 14 14 Si 1.86793 * 120.00279 * 180.02562 * 12 10 8 15 15 H 1.48505 * 109.47149 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47318 * 119.99552 * 14 12 10 17 17 H 1.48503 * 109.46929 * 239.99947 * 14 12 10 18 18 H 1.08993 * 109.47253 * 309.29785 * 1 2 3 19 19 H 1.09004 * 109.46867 * 69.29530 * 1 2 3 20 20 H 1.08998 * 109.46901 * 189.28921 * 1 2 3 21 21 H 1.08993 * 109.47389 * 179.97438 * 3 2 1 22 22 H 1.09003 * 109.47160 * 300.00225 * 3 2 1 23 23 H 1.08999 * 109.46794 * 60.00036 * 3 2 1 24 24 H 1.09001 * 109.46995 * 300.00262 * 4 2 1 25 25 H 1.09003 * 109.46992 * 59.99842 * 4 2 1 26 26 H 1.08997 * 109.47007 * 180.02562 * 4 2 1 27 27 H 1.08997 * 113.76208 * 108.10176 * 6 5 2 28 28 H 1.09000 * 113.75767 * 336.73614 * 6 5 2 29 29 H 1.08997 * 113.73259 * 138.07892 * 7 6 5 30 30 H 1.09002 * 113.73335 * 269.25545 * 7 6 5 31 31 H 0.97001 * 119.99444 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 2.0197 -0.6925 1.1994 6 6 1.5229 -2.0854 1.2474 7 6 1.2723 -1.8355 2.7455 8 6 1.2070 -0.3397 2.3873 9 1 0.2037 0.0103 2.1448 10 6 1.9210 0.5517 3.3704 11 1 2.9086 0.9246 3.1427 12 6 1.3134 0.8912 4.5606 13 7 0.1104 0.4374 4.8377 14 14 2.1981 1.9968 5.7789 15 1 3.5281 2.3697 5.2336 16 1 1.3944 3.2245 6.0074 17 1 2.3754 1.2747 7.0644 18 1 -0.3633 0.6508 0.7952 19 1 -0.3633 0.3634 -0.9613 20 1 -0.3633 -1.0142 0.1659 21 1 3.1300 1.4425 0.0005 22 1 1.6767 1.9564 -0.8900 23 1 1.6767 1.9563 0.8900 24 1 1.6767 -1.7489 -1.2494 25 1 1.6767 -0.2073 -2.1393 26 1 3.1300 -0.7216 -1.2490 27 1 2.2912 -2.8328 1.0494 28 1 0.6121 -2.2469 0.6708 29 1 0.3273 -2.2419 3.1060 30 1 2.1177 -2.0978 3.3815 31 1 -0.3171 0.6765 5.6749 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211888757.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:44 Heat of formation + Delta-G solvation = 30.221397 kcal Electronic energy + Delta-G solvation = -11859.357383 eV Core-core repulsion = 9948.856104 eV Total energy + Delta-G solvation = -1910.501279 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -39.43163 -34.12918 -32.23931 -27.50975 -26.78990 -26.19649 -25.76742 -22.64462 -19.47542 -17.56623 -16.38835 -15.43908 -14.59379 -14.09628 -13.56935 -13.18545 -12.74986 -12.12391 -11.72532 -11.70685 -11.47156 -11.05190 -10.98734 -10.66712 -10.58282 -10.46107 -10.22526 -10.06337 -9.50769 -9.29219 -8.93535 -8.33597 -7.45048 -5.99039 -3.98892 3.32442 3.40395 3.45982 4.45286 5.03039 5.33187 5.47067 5.56045 5.78094 5.88905 6.00036 6.08423 6.15680 6.24781 6.36606 6.40173 6.45416 6.58761 6.61747 6.78643 7.01672 7.04116 7.07582 7.21582 7.52468 7.58261 7.99380 8.40004 8.52812 9.07183 9.64298 11.11108 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.052053 B = 0.013780 C = 0.012526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.782133 B = 2031.406137 C = 2234.804244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.070 3.930 3 C -0.127 4.127 4 C -0.134 4.134 5 N -0.474 5.474 6 C -0.014 4.014 7 C -0.136 4.136 8 C 0.175 3.825 9 H 0.055 0.945 10 C -0.489 4.489 11 H 0.063 0.937 12 C 0.059 3.941 13 N -0.895 5.895 14 Si 0.893 3.107 15 H -0.272 1.272 16 H -0.285 1.285 17 H -0.285 1.285 18 H 0.070 0.930 19 H 0.045 0.955 20 H 0.055 0.945 21 H 0.053 0.947 22 H 0.040 0.960 23 H 0.067 0.933 24 H 0.048 0.952 25 H 0.047 0.953 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.795 -1.448 -7.699 7.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.021 4.021 3 C -0.185 4.185 4 C -0.192 4.192 5 N -0.198 5.198 6 C -0.143 4.143 7 C -0.175 4.175 8 C 0.068 3.932 9 H 0.072 0.928 10 C -0.528 4.528 11 H 0.081 0.919 12 C -0.142 4.142 13 N -0.534 5.534 14 Si 0.721 3.279 15 H -0.197 1.197 16 H -0.212 1.212 17 H -0.211 1.211 18 H 0.089 0.911 19 H 0.064 0.936 20 H 0.073 0.927 21 H 0.072 0.928 22 H 0.059 0.941 23 H 0.086 0.914 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.370 -1.284 -7.589 7.818 hybrid contribution -0.561 0.410 0.626 0.935 sum 0.808 -0.874 -6.963 7.064 Atomic orbital electron populations 1.22546 0.97687 1.02122 1.01378 1.21376 0.92358 0.95543 0.92812 1.21670 1.00957 0.94797 1.01059 1.21831 1.01227 0.99628 0.96488 1.68890 1.47483 1.01063 1.02321 1.23890 0.97916 0.93824 0.98656 1.23379 1.00084 1.00985 0.93017 1.21173 0.93255 0.92318 0.86462 0.92787 1.20962 1.02189 1.28800 1.00852 0.91887 1.24964 0.94855 0.96185 0.98200 1.69979 1.13874 1.45321 1.24268 0.86511 0.79885 0.80349 0.81111 1.19668 1.21167 1.21121 0.91071 0.93564 0.92662 0.92799 0.94075 0.91409 0.93321 0.93374 0.92536 0.91775 0.92688 0.93411 0.91045 0.93137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.27 7.28 37.16 0.27 -3.00 16 2 C 0.07 1.32 0.72 -131.60 -0.09 1.22 16 3 C -0.13 -2.38 8.63 37.16 0.32 -2.05 16 4 C -0.13 -2.14 8.38 37.16 0.31 -1.83 16 5 N -0.47 -10.45 5.77 -216.26 -1.25 -11.69 16 6 C -0.01 -0.28 6.52 -2.76 -0.02 -0.30 16 7 C -0.14 -3.19 7.83 -25.79 -0.20 -3.39 16 8 C 0.17 4.40 2.35 -67.67 -0.16 4.24 16 9 H 0.05 1.45 5.07 -51.93 -0.26 1.18 16 10 C -0.49 -13.63 8.91 -34.44 -0.31 -13.94 16 11 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 13 N -0.90 -25.94 13.29 55.43 0.74 -25.20 16 14 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 15 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 H 0.07 1.46 6.27 -51.93 -0.33 1.13 16 19 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 20 H 0.05 1.00 5.76 -51.93 -0.30 0.70 16 21 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 22 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.07 1.43 7.70 -51.93 -0.40 1.03 16 24 H 0.05 0.75 7.09 -51.93 -0.37 0.38 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.06 1.03 5.54 -51.93 -0.29 0.74 16 29 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.07 1.74 8.09 -51.93 -0.42 1.32 16 31 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 244.61 15.07 3.69 3.69 Total: -1.00 -28.47 244.61 -6.69 -35.16 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -4.87 Total: -1.05 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: 0.02 Total: -17.48 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: -0.51 Total: -36.90 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -28.47 -6.69 -35.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211888757.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.384 kcal (2) G-P(sol) polarization free energy of solvation -28.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds