Wall clock time and date at job start Thu Apr 9 2020 13:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47291 * 2 1 4 4 C 1.53006 * 109.47350 * 240.00229 * 2 1 3 5 5 N 1.46903 * 109.47152 * 120.00159 * 2 1 3 6 6 C 1.47957 * 110.99952 * 58.85713 * 5 2 1 7 7 C 1.53937 * 86.18033 * 222.41954 * 6 5 2 8 8 C 1.48184 * 111.06611 * 319.42226 * 5 2 1 9 9 H 1.08995 * 113.76061 * 23.24468 * 8 5 2 10 10 C 1.50698 * 113.82717 * 251.80881 * 8 5 2 11 11 H 1.07998 * 119.99640 * 3.99867 * 10 8 5 12 12 C 1.37879 * 120.00389 * 184.00362 * 10 8 5 13 13 N 1.31522 * 119.99498 * 359.97438 * 12 10 8 14 14 Si 1.86793 * 120.00279 * 180.02562 * 12 10 8 15 15 H 1.48505 * 109.47149 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47318 * 119.99552 * 14 12 10 17 17 H 1.48503 * 109.46929 * 239.99947 * 14 12 10 18 18 H 1.08993 * 109.47253 * 309.29785 * 1 2 3 19 19 H 1.09004 * 109.46867 * 69.29530 * 1 2 3 20 20 H 1.08998 * 109.46901 * 189.28921 * 1 2 3 21 21 H 1.08993 * 109.47389 * 179.97438 * 3 2 1 22 22 H 1.09003 * 109.47160 * 300.00225 * 3 2 1 23 23 H 1.08999 * 109.46794 * 60.00036 * 3 2 1 24 24 H 1.09001 * 109.46995 * 300.00262 * 4 2 1 25 25 H 1.09003 * 109.46992 * 59.99842 * 4 2 1 26 26 H 1.08997 * 109.47007 * 180.02562 * 4 2 1 27 27 H 1.08997 * 113.76208 * 108.10176 * 6 5 2 28 28 H 1.09000 * 113.75767 * 336.73614 * 6 5 2 29 29 H 1.08997 * 113.73259 * 138.07892 * 7 6 5 30 30 H 1.09002 * 113.73335 * 269.25545 * 7 6 5 31 31 H 0.97001 * 119.99444 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 2.0197 -0.6925 1.1994 6 6 1.5229 -2.0854 1.2474 7 6 1.2723 -1.8355 2.7455 8 6 1.2070 -0.3397 2.3873 9 1 0.2037 0.0103 2.1448 10 6 1.9210 0.5517 3.3704 11 1 2.9086 0.9246 3.1427 12 6 1.3134 0.8912 4.5606 13 7 0.1104 0.4374 4.8377 14 14 2.1981 1.9968 5.7789 15 1 3.5281 2.3697 5.2336 16 1 1.3944 3.2245 6.0074 17 1 2.3754 1.2747 7.0644 18 1 -0.3633 0.6508 0.7952 19 1 -0.3633 0.3634 -0.9613 20 1 -0.3633 -1.0142 0.1659 21 1 3.1300 1.4425 0.0005 22 1 1.6767 1.9564 -0.8900 23 1 1.6767 1.9563 0.8900 24 1 1.6767 -1.7489 -1.2494 25 1 1.6767 -0.2073 -2.1393 26 1 3.1300 -0.7216 -1.2490 27 1 2.2912 -2.8328 1.0494 28 1 0.6121 -2.2469 0.6708 29 1 0.3273 -2.2419 3.1060 30 1 2.1177 -2.0978 3.3815 31 1 -0.3171 0.6765 5.6749 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211888757.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:43 Heat of formation + Delta-G solvation = 11.332264 kcal Electronic energy + Delta-G solvation = -11860.176477 eV Core-core repulsion = 9948.856104 eV Total energy + Delta-G solvation = -1911.320373 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.12124 -35.77016 -34.30651 -29.24345 -28.26618 -27.87517 -27.50291 -24.54048 -21.19514 -19.27137 -18.44833 -17.05133 -16.61139 -15.71092 -15.23372 -14.76881 -14.48654 -13.79191 -13.44533 -13.14624 -13.00918 -12.87376 -12.60429 -12.51241 -12.30743 -12.12707 -11.93956 -11.75904 -11.24680 -11.07692 -10.86068 -10.42123 -9.19673 -8.12717 -6.18915 1.39631 1.41529 1.53834 2.43095 3.15741 3.42136 4.00825 4.10940 4.18661 4.32449 4.43828 4.67991 4.71781 4.78359 4.84237 4.92709 4.99566 5.05380 5.10925 5.23848 5.29862 5.36034 5.41222 5.49291 5.63268 5.77323 5.95605 6.43917 6.66606 6.93374 7.47710 8.96908 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.052053 B = 0.013780 C = 0.012526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.782133 B = 2031.406137 C = 2234.804244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.060 3.940 3 C -0.123 4.123 4 C -0.126 4.126 5 N -0.487 5.487 6 C 0.006 3.994 7 C -0.139 4.139 8 C 0.168 3.832 9 H 0.036 0.964 10 C -0.503 4.503 11 H 0.048 0.952 12 C 0.012 3.988 13 N -0.925 5.925 14 Si 0.955 3.045 15 H -0.270 1.270 16 H -0.279 1.279 17 H -0.280 1.280 18 H 0.038 0.962 19 H 0.076 0.924 20 H 0.055 0.945 21 H 0.050 0.950 22 H 0.071 0.929 23 H 0.031 0.969 24 H 0.056 0.944 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.038 0.962 30 H 0.055 0.945 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.236 -1.622 -9.111 9.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.030 4.030 3 C -0.180 4.180 4 C -0.183 4.183 5 N -0.211 5.211 6 C -0.123 4.123 7 C -0.178 4.178 8 C 0.060 3.940 9 H 0.053 0.947 10 C -0.542 4.542 11 H 0.067 0.933 12 C -0.186 4.186 13 N -0.565 5.565 14 Si 0.781 3.219 15 H -0.194 1.194 16 H -0.205 1.205 17 H -0.206 1.206 18 H 0.057 0.943 19 H 0.095 0.905 20 H 0.074 0.926 21 H 0.069 0.931 22 H 0.090 0.910 23 H 0.051 0.949 24 H 0.075 0.925 25 H 0.092 0.908 26 H 0.074 0.926 27 H 0.104 0.896 28 H 0.092 0.908 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.819 -1.463 -9.015 9.312 hybrid contribution -0.702 0.473 1.019 1.325 sum 1.117 -0.991 -7.995 8.134 Atomic orbital electron populations 1.22449 0.97192 1.01539 1.01781 1.21582 0.92859 0.95691 0.92912 1.21633 1.00694 0.94904 1.00813 1.21760 1.01163 0.99945 0.95469 1.68789 1.47362 1.02249 1.02703 1.23846 0.99282 0.93363 0.95765 1.23284 0.98989 1.00038 0.95514 1.20995 0.92527 0.92597 0.87874 0.94668 1.21190 1.01771 1.29345 1.01892 0.93338 1.25690 0.95571 0.97525 0.99857 1.70076 1.15089 1.46515 1.24842 0.85545 0.78803 0.78681 0.78848 1.19411 1.20519 1.20584 0.94321 0.90540 0.92575 0.93100 0.90974 0.94943 0.92474 0.90752 0.92615 0.89596 0.90844 0.94342 0.92587 0.93014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.98 7.28 71.98 0.52 -5.45 16 2 C 0.06 2.15 0.72 3.53 0.00 2.15 16 3 C -0.12 -4.44 8.63 71.98 0.62 -3.82 16 4 C -0.13 -3.53 8.38 71.98 0.60 -2.93 16 5 N -0.49 -21.06 5.77 -838.12 -4.84 -25.90 16 6 C 0.01 0.23 6.52 86.41 0.56 0.79 16 7 C -0.14 -6.59 7.83 31.24 0.24 -6.34 16 8 C 0.17 8.58 2.35 44.23 0.10 8.68 16 9 H 0.04 1.95 5.07 -2.39 -0.01 1.94 16 10 C -0.50 -28.65 8.91 25.60 0.23 -28.42 16 11 H 0.05 2.83 7.81 -2.91 -0.02 2.80 16 12 C 0.01 0.68 5.46 84.65 0.46 1.14 16 13 N -0.93 -54.58 13.29 21.45 0.28 -54.29 16 14 Si 0.96 44.85 29.54 68.60 2.03 46.88 16 15 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 16 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 17 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 18 H 0.04 1.59 6.27 -2.39 -0.01 1.57 16 19 H 0.08 2.16 8.12 -2.38 -0.02 2.14 16 20 H 0.06 1.92 5.76 -2.39 -0.01 1.90 16 21 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 22 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 23 H 0.03 1.37 7.70 -2.39 -0.02 1.35 16 24 H 0.06 1.51 7.09 -2.39 -0.02 1.49 16 25 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 28 H 0.07 2.55 5.54 -2.39 -0.01 2.54 16 29 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.06 2.76 8.09 -2.39 -0.02 2.75 16 31 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -61.15 244.61 1.91 -59.25 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: 1.08 Total: 8.27 kcal Atomic # 6 Polarization: -37.55 SS G_CDS: 3.35 Total: -34.20 kcal Atomic # 7 Polarization: -75.64 SS G_CDS: -4.55 Total: -80.19 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -61.15 1.91 -59.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211888757.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.579 kcal (2) G-P(sol) polarization free energy of solvation -61.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds