Wall clock time and date at job start Thu Apr 9 2020 13:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 110.43200 * 2 1 4 4 C 1.54887 * 110.49002 * 237.32130 * 2 1 3 5 5 C 1.54887 * 102.75053 * 203.37642 * 4 2 1 6 6 C 1.54274 * 104.19494 * 37.93975 * 5 4 2 7 7 H 1.08997 * 110.06896 * 95.69799 * 6 5 4 8 8 C 1.53004 * 110.02880 * 217.10673 * 6 5 4 9 9 N 1.46499 * 109.46939 * 292.16479 * 8 6 5 10 10 C 1.36932 * 119.99549 * 180.02562 * 9 8 6 11 11 H 1.08003 * 120.00354 * 0.02562 * 10 9 8 12 12 C 1.38817 * 120.00011 * 179.97438 * 10 9 8 13 13 N 1.31619 * 120.00154 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 119.99635 * 0.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 269.99668 * 14 12 10 16 16 H 1.48503 * 109.47261 * 149.99848 * 14 12 10 17 17 H 1.48500 * 109.47454 * 29.99841 * 14 12 10 18 18 C 1.53872 * 106.59740 * 336.38731 * 6 5 4 19 19 H 1.09000 * 109.47166 * 297.45371 * 1 2 3 20 20 H 1.08995 * 109.47234 * 57.45850 * 1 2 3 21 21 H 1.09000 * 109.46809 * 177.45733 * 1 2 3 22 22 H 1.09004 * 110.75034 * 321.68910 * 4 2 1 23 23 H 1.08997 * 110.75920 * 85.05869 * 4 2 1 24 24 H 1.09002 * 110.48772 * 279.26389 * 5 4 2 25 25 H 1.08999 * 110.48903 * 156.61570 * 5 4 2 26 26 H 1.09008 * 109.46680 * 172.16789 * 8 6 5 27 27 H 1.08994 * 109.47425 * 52.16717 * 8 6 5 28 28 H 0.96993 * 120.00302 * 0.02562 * 9 8 6 29 29 H 0.96998 * 119.99442 * 179.97438 * 13 12 10 30 30 H 1.09004 * 110.03245 * 119.28663 * 18 6 5 31 31 H 1.08993 * 110.03766 * 240.66524 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0721 -0.7834 -1.2212 5 6 3.4907 -1.1987 -0.7586 6 6 3.3166 -1.5395 0.7360 7 1 3.1697 -2.6123 0.8603 8 6 4.5466 -1.0844 1.5240 9 7 5.7017 -1.8996 1.1399 10 6 6.9219 -1.6735 1.7186 11 1 7.0328 -0.8945 2.4584 12 6 8.0164 -2.4462 1.3551 13 7 9.1892 -2.2292 1.9117 14 14 7.8245 -3.7941 0.0761 15 1 7.4629 -5.0675 0.7493 16 1 9.1047 -3.9675 -0.6562 17 1 6.7533 -3.4189 -0.8815 18 6 2.0700 -0.7772 1.2182 19 1 -0.3633 0.4738 0.9119 20 1 -0.3633 0.5528 -0.8663 21 1 -0.3633 -1.0267 -0.0456 22 1 1.4581 -1.6617 -1.4202 23 1 2.1251 -0.1407 -2.0999 24 1 4.1898 -0.3716 -0.8823 25 1 3.8317 -2.0736 -1.3121 26 1 4.3580 -1.2014 2.5912 27 1 4.7520 -0.0368 1.3040 28 1 5.6021 -2.5995 0.4758 29 1 9.9538 -2.7695 1.6579 30 1 1.3176 -1.4802 1.5759 31 1 2.3410 -0.0838 2.0143 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230418137.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:13 Heat of formation + Delta-G solvation = -15.214828 kcal Electronic energy + Delta-G solvation = -11208.584266 eV Core-core repulsion = 9296.112725 eV Total energy + Delta-G solvation = -1912.471541 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.52952 -34.66799 -31.94022 -30.35544 -28.87310 -25.81559 -23.73179 -21.75705 -20.04718 -19.28807 -17.43056 -15.54208 -14.95641 -14.30512 -13.79782 -13.42128 -13.13743 -12.92722 -12.61095 -12.20067 -11.64508 -11.54960 -10.88598 -10.74034 -10.59715 -10.52482 -10.35378 -10.18778 -10.16133 -9.90059 -9.53032 -8.83365 -7.16036 -5.72245 -3.06516 3.40642 3.43814 3.47982 4.63572 4.71090 4.83797 4.89941 5.33891 5.46053 5.56981 5.60880 5.66587 5.68336 5.75111 5.90593 5.99712 6.00963 6.05472 6.17265 6.26392 6.30694 6.50265 6.53823 6.61510 6.81282 6.94324 8.05501 8.47532 9.27538 10.00220 10.21287 11.46547 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.075431 B = 0.009258 C = 0.008619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.112550 B = 3023.818227 C = 3247.826306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 H 0.072 0.928 4 C -0.120 4.120 5 C -0.116 4.116 6 C -0.103 4.103 7 H 0.068 0.932 8 C 0.164 3.836 9 N -0.756 5.756 10 C -0.242 4.242 11 H 0.089 0.911 12 C 0.002 3.998 13 N -0.936 5.936 14 Si 0.884 3.116 15 H -0.285 1.285 16 H -0.291 1.291 17 H -0.277 1.277 18 C -0.112 4.112 19 H 0.052 0.948 20 H 0.050 0.950 21 H 0.053 0.947 22 H 0.062 0.938 23 H 0.060 0.940 24 H 0.071 0.929 25 H 0.059 0.941 26 H 0.024 0.976 27 H 0.026 0.974 28 H 0.360 0.640 29 H 0.259 0.741 30 H 0.060 0.940 31 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.240 2.516 -5.173 17.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 H 0.091 0.909 4 C -0.158 4.158 5 C -0.154 4.154 6 C -0.122 4.122 7 H 0.086 0.914 8 C 0.037 3.963 9 N -0.402 5.402 10 C -0.372 4.372 11 H 0.107 0.893 12 C -0.194 4.194 13 N -0.585 5.585 14 Si 0.715 3.285 15 H -0.211 1.211 16 H -0.218 1.218 17 H -0.203 1.203 18 C -0.150 4.150 19 H 0.071 0.929 20 H 0.069 0.931 21 H 0.072 0.928 22 H 0.081 0.919 23 H 0.079 0.921 24 H 0.089 0.911 25 H 0.078 0.922 26 H 0.042 0.958 27 H 0.044 0.956 28 H 0.193 0.807 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.061 2.619 -5.018 17.029 hybrid contribution 0.087 -1.022 -0.864 1.341 sum -15.974 1.597 -5.883 17.098 Atomic orbital electron populations 1.21801 0.95517 1.01478 1.01186 1.21975 0.94862 0.99436 0.95430 0.90924 1.22582 0.96787 0.99309 0.97114 1.22396 0.96191 1.01414 0.95407 1.21986 0.95112 0.99829 0.95298 0.91367 1.20777 0.85468 0.94241 0.95840 1.42735 1.06702 1.40987 1.49759 1.19100 0.84758 1.15330 1.17963 0.89297 1.24673 0.95429 0.99482 0.99778 1.69707 0.99837 1.42764 1.46184 0.86538 0.76802 0.82968 0.82217 1.21139 1.21752 1.20296 1.22203 0.96644 0.98691 0.97439 0.92908 0.93071 0.92835 0.91911 0.92125 0.91053 0.92182 0.95801 0.95612 0.80709 0.93139 0.92121 0.91628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.12 37.16 0.34 -1.05 16 2 C -0.10 -1.16 3.46 -88.96 -0.31 -1.47 16 3 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 4 C -0.12 -1.49 6.33 -24.74 -0.16 -1.65 16 5 C -0.12 -1.80 6.08 -25.07 -0.15 -1.95 16 6 C -0.10 -1.68 2.96 -89.50 -0.27 -1.94 16 7 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 8 C 0.16 3.33 5.31 -4.04 -0.02 3.31 16 9 N -0.76 -18.80 5.25 -59.91 -0.31 -19.12 16 10 C -0.24 -7.10 10.47 -15.06 -0.16 -7.26 16 11 H 0.09 2.79 8.06 -52.48 -0.42 2.36 16 12 C 0.00 0.05 5.50 -17.43 -0.10 -0.04 16 13 N -0.94 -30.14 13.97 55.49 0.78 -29.37 16 14 Si 0.88 22.72 27.73 -169.99 -4.71 18.01 16 15 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 16 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 17 H -0.28 -6.70 6.52 56.52 0.37 -6.33 16 18 C -0.11 -1.48 6.03 -25.61 -0.15 -1.63 16 19 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 20 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 21 H 0.05 0.51 8.12 -51.93 -0.42 0.09 16 22 H 0.06 0.73 8.04 -51.93 -0.42 0.31 16 23 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.07 1.19 7.76 -51.93 -0.40 0.79 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.02 0.50 8.14 -51.92 -0.42 0.07 16 27 H 0.03 0.54 8.00 -51.93 -0.42 0.12 16 28 H 0.36 8.73 5.41 -40.82 -0.22 8.51 16 29 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 30 H 0.06 0.74 7.84 -51.93 -0.41 0.33 16 31 H 0.06 0.87 7.67 -51.93 -0.40 0.47 16 LS Contribution 249.16 15.07 3.75 3.75 Total: -1.00 -31.36 249.16 -6.71 -38.06 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -5.23 Total: 2.35 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -0.97 Total: -13.69 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: 0.46 Total: -48.48 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.71 Total: 18.01 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -31.36 -6.71 -38.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230418137.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.848 kcal (2) G-P(sol) polarization free energy of solvation -31.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds