Wall clock time and date at job start Thu Apr 9 2020 13:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.01836 * 2 1 4 4 C 1.53872 * 110.03598 * 121.39194 * 2 1 3 5 5 C 1.54266 * 106.59933 * 119.28382 * 4 2 1 6 6 C 1.54889 * 104.19617 * 23.61336 * 5 4 2 7 7 H 1.08997 * 110.75665 * 80.55279 * 6 5 4 8 8 C 1.52997 * 110.75387 * 203.74498 * 6 5 4 9 9 N 1.46503 * 109.46874 * 293.54162 * 8 6 5 10 10 C 1.36940 * 119.99759 * 180.02562 * 9 8 6 11 11 H 1.08003 * 120.00332 * 0.02562 * 10 9 8 12 12 C 1.38814 * 119.99716 * 179.97438 * 10 9 8 13 13 N 1.31620 * 120.00226 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99843 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47060 * 90.00308 * 14 12 10 16 16 H 1.48499 * 109.47423 * 210.00014 * 14 12 10 17 17 H 1.48500 * 109.47313 * 330.00497 * 14 12 10 18 18 C 1.54265 * 110.03416 * 238.61043 * 2 1 3 19 19 H 1.09002 * 109.47153 * 300.69904 * 1 2 3 20 20 H 1.09001 * 109.46832 * 180.70094 * 1 2 3 21 21 H 1.09004 * 109.47261 * 60.70076 * 1 2 3 22 22 H 1.09000 * 110.03146 * 238.57177 * 4 2 1 23 23 H 1.09000 * 110.03109 * 359.95341 * 4 2 1 24 24 H 1.09007 * 110.48462 * 142.29136 * 5 4 2 25 25 H 1.08997 * 110.48681 * 264.93107 * 5 4 2 26 26 H 1.08997 * 109.47401 * 53.54529 * 8 6 5 27 27 H 1.09004 * 109.47362 * 173.54854 * 8 6 5 28 28 H 0.96998 * 120.00263 * 0.02562 * 9 8 6 29 29 H 0.96995 * 119.99643 * 179.97438 * 13 12 10 30 30 H 1.09008 * 110.48637 * 335.78267 * 18 2 1 31 31 H 1.09007 * 110.48937 * 98.42466 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0572 -0.7530 1.2340 5 6 2.8875 -1.9403 0.7043 6 6 3.3137 -1.5010 -0.7185 7 1 4.1730 -0.8318 -0.6751 8 6 3.6208 -2.7185 -1.5927 9 7 4.8078 -3.4040 -1.0755 10 6 5.2757 -4.5289 -1.7008 11 1 4.7699 -4.9105 -2.5754 12 6 6.4007 -5.1781 -1.2111 13 7 7.0174 -4.7128 -0.1455 14 14 7.0385 -6.7130 -2.0636 15 1 8.0212 -6.3270 -3.1079 16 1 7.6963 -7.5957 -1.0670 17 1 5.9050 -7.4364 -2.6938 18 6 2.0585 -0.7549 -1.2372 19 1 -0.3633 0.5247 0.8837 20 1 -0.3633 -1.0276 0.0126 21 1 -0.3634 0.5029 -0.8962 22 1 2.6867 -0.0945 1.8324 23 1 1.2230 -1.1177 1.8333 24 1 3.7638 -2.1031 1.3318 25 1 2.2772 -2.8422 0.6583 26 1 2.7712 -3.4011 -1.5765 27 1 3.8063 -2.3934 -2.6164 28 1 5.2623 -3.0611 -0.2902 29 1 7.8033 -5.1667 0.1969 30 1 1.3142 -1.4653 -1.5973 31 1 2.3297 -0.0526 -2.0256 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230418140.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:15 Heat of formation + Delta-G solvation = -19.506730 kcal Electronic energy + Delta-G solvation = -11149.401623 eV Core-core repulsion = 9236.743971 eV Total energy + Delta-G solvation = -1912.657652 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -38.37831 -34.49723 -31.86601 -29.95114 -28.60462 -25.67418 -23.72466 -22.08603 -19.68062 -19.12092 -16.96376 -15.77664 -14.68393 -14.09085 -13.76470 -13.38957 -12.96563 -12.73867 -12.63533 -12.14219 -11.60759 -11.06330 -10.80250 -10.66515 -10.46492 -10.38672 -10.23379 -10.17356 -10.02971 -9.84672 -9.56567 -8.80104 -6.83624 -5.70416 -2.98059 3.47311 3.52035 3.54048 4.63768 4.86108 4.94235 4.97188 5.50119 5.58265 5.62475 5.69789 5.71855 5.82018 5.96013 6.04556 6.12289 6.15344 6.22107 6.28274 6.43244 6.46441 6.61414 6.69545 6.74429 6.92698 7.08200 7.75611 8.49304 9.60008 10.20416 10.55401 11.52862 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.094474 B = 0.008034 C = 0.007700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 296.305439 B = 3484.493553 C = 3635.393330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 H 0.065 0.935 4 C -0.121 4.121 5 C -0.112 4.112 6 C -0.098 4.098 7 H 0.072 0.928 8 C 0.160 3.840 9 N -0.732 5.732 10 C -0.237 4.237 11 H 0.069 0.931 12 C -0.016 4.016 13 N -0.935 5.935 14 Si 0.907 3.093 15 H -0.290 1.290 16 H -0.292 1.292 17 H -0.282 1.282 18 C -0.112 4.112 19 H 0.049 0.951 20 H 0.055 0.945 21 H 0.050 0.950 22 H 0.057 0.943 23 H 0.058 0.942 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.018 0.982 27 H 0.016 0.984 28 H 0.384 0.616 29 H 0.254 0.746 30 H 0.066 0.934 31 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.698 8.487 0.772 13.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 H 0.084 0.916 4 C -0.159 4.159 5 C -0.150 4.150 6 C -0.117 4.117 7 H 0.091 0.909 8 C 0.033 3.967 9 N -0.376 5.376 10 C -0.368 4.368 11 H 0.087 0.913 12 C -0.212 4.212 13 N -0.584 5.584 14 Si 0.738 3.262 15 H -0.218 1.218 16 H -0.218 1.218 17 H -0.208 1.208 18 C -0.150 4.150 19 H 0.068 0.932 20 H 0.074 0.926 21 H 0.069 0.931 22 H 0.076 0.924 23 H 0.077 0.923 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.035 0.965 27 H 0.034 0.966 28 H 0.217 0.783 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.693 8.342 0.663 13.579 hybrid contribution 0.601 -0.748 -0.178 0.976 sum -10.092 7.594 0.485 12.640 Atomic orbital electron populations 1.21879 0.95546 1.01627 1.00954 1.21738 0.95158 0.99154 0.95555 0.91613 1.22254 0.99217 0.97517 0.96922 1.22312 0.99348 0.97089 0.96217 1.22301 0.96849 0.97285 0.95286 0.90939 1.20653 0.90274 0.91076 0.94719 1.42372 1.30123 1.30612 1.34523 1.19269 1.07592 1.01875 1.08073 0.91272 1.24734 0.98560 0.99654 0.98260 1.69664 1.22197 1.41819 1.24761 0.86188 0.78674 0.82937 0.78410 1.21779 1.21804 1.20810 1.22449 0.97453 0.98525 0.96606 0.93186 0.92628 0.93074 0.92388 0.92283 0.91505 0.91719 0.96468 0.96644 0.78281 0.93597 0.91578 0.92172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 8.84 37.16 0.33 -1.19 16 2 C -0.10 -1.21 3.50 -89.50 -0.31 -1.53 16 3 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 4 C -0.12 -1.63 6.46 -25.61 -0.17 -1.80 16 5 C -0.11 -1.87 5.97 -25.07 -0.15 -2.02 16 6 C -0.10 -1.71 2.96 -88.59 -0.26 -1.97 16 7 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 8 C 0.16 3.43 5.70 -4.04 -0.02 3.40 16 9 N -0.73 -19.41 5.45 -59.90 -0.33 -19.74 16 10 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 11 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 12 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 13 N -0.94 -29.06 13.06 55.49 0.72 -28.33 16 14 Si 0.91 22.95 29.55 -169.99 -5.02 17.92 16 15 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 16 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 17 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 18 C -0.11 -1.58 5.81 -25.03 -0.15 -1.73 16 19 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 20 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 21 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.06 0.73 7.67 -51.93 -0.40 0.34 16 24 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.06 1.13 8.01 -51.93 -0.42 0.71 16 26 H 0.02 0.38 8.10 -51.93 -0.42 -0.04 16 27 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.38 10.61 7.53 -40.82 -0.31 10.31 16 29 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 30 H 0.07 0.92 7.76 -51.92 -0.40 0.52 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 252.59 15.07 3.81 3.81 Total: -1.00 -30.56 252.59 -7.09 -37.65 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -5.30 Total: 3.15 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: -0.98 Total: -14.46 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: 0.40 Total: -48.07 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -30.56 -7.09 -37.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230418140.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.143 kcal (2) G-P(sol) polarization free energy of solvation -30.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds