Wall clock time and date at job start Thu Apr 9 2020 13:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.01836 * 2 1 4 4 C 1.53872 * 110.03598 * 121.39194 * 2 1 3 5 5 C 1.54266 * 106.59933 * 119.28382 * 4 2 1 6 6 C 1.54889 * 104.19617 * 23.61336 * 5 4 2 7 7 H 1.08997 * 110.75665 * 80.55279 * 6 5 4 8 8 C 1.52997 * 110.75387 * 203.74498 * 6 5 4 9 9 N 1.46503 * 109.46874 * 293.54162 * 8 6 5 10 10 C 1.36940 * 119.99759 * 180.02562 * 9 8 6 11 11 H 1.08003 * 120.00332 * 0.02562 * 10 9 8 12 12 C 1.38814 * 119.99716 * 179.97438 * 10 9 8 13 13 N 1.31620 * 120.00226 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99843 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47060 * 90.00308 * 14 12 10 16 16 H 1.48499 * 109.47423 * 210.00014 * 14 12 10 17 17 H 1.48500 * 109.47313 * 330.00497 * 14 12 10 18 18 C 1.54265 * 110.03416 * 238.61043 * 2 1 3 19 19 H 1.09002 * 109.47153 * 300.69904 * 1 2 3 20 20 H 1.09001 * 109.46832 * 180.70094 * 1 2 3 21 21 H 1.09004 * 109.47261 * 60.70076 * 1 2 3 22 22 H 1.09000 * 110.03146 * 238.57177 * 4 2 1 23 23 H 1.09000 * 110.03109 * 359.95341 * 4 2 1 24 24 H 1.09007 * 110.48462 * 142.29136 * 5 4 2 25 25 H 1.08997 * 110.48681 * 264.93107 * 5 4 2 26 26 H 1.08997 * 109.47401 * 53.54529 * 8 6 5 27 27 H 1.09004 * 109.47362 * 173.54854 * 8 6 5 28 28 H 0.96998 * 120.00263 * 0.02562 * 9 8 6 29 29 H 0.96995 * 119.99643 * 179.97438 * 13 12 10 30 30 H 1.09008 * 110.48637 * 335.78267 * 18 2 1 31 31 H 1.09007 * 110.48937 * 98.42466 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0572 -0.7530 1.2340 5 6 2.8875 -1.9403 0.7043 6 6 3.3137 -1.5010 -0.7185 7 1 4.1730 -0.8318 -0.6751 8 6 3.6208 -2.7185 -1.5927 9 7 4.8078 -3.4040 -1.0755 10 6 5.2757 -4.5289 -1.7008 11 1 4.7699 -4.9105 -2.5754 12 6 6.4007 -5.1781 -1.2111 13 7 7.0174 -4.7128 -0.1455 14 14 7.0385 -6.7130 -2.0636 15 1 8.0212 -6.3270 -3.1079 16 1 7.6963 -7.5957 -1.0670 17 1 5.9050 -7.4364 -2.6938 18 6 2.0585 -0.7549 -1.2372 19 1 -0.3633 0.5247 0.8837 20 1 -0.3633 -1.0276 0.0126 21 1 -0.3634 0.5029 -0.8962 22 1 2.6867 -0.0945 1.8324 23 1 1.2230 -1.1177 1.8333 24 1 3.7638 -2.1031 1.3318 25 1 2.2772 -2.8422 0.6583 26 1 2.7712 -3.4011 -1.5765 27 1 3.8063 -2.3934 -2.6164 28 1 5.2623 -3.0611 -0.2902 29 1 7.8033 -5.1667 0.1969 30 1 1.3142 -1.4653 -1.5973 31 1 2.3297 -0.0526 -2.0256 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230418140.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:14 Heat of formation + Delta-G solvation = -38.018664 kcal Electronic energy + Delta-G solvation = -11150.204361 eV Core-core repulsion = 9236.743971 eV Total energy + Delta-G solvation = -1913.460390 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.63510 -36.39348 -33.66609 -31.51495 -29.96584 -27.22063 -25.27541 -23.86886 -21.04368 -20.28901 -19.10733 -17.02949 -16.58700 -15.75031 -15.27028 -14.95328 -14.56457 -14.24746 -13.68625 -13.45867 -13.08929 -12.84724 -12.75600 -12.17335 -12.04632 -11.74793 -11.60471 -11.55171 -11.38248 -11.35918 -11.17110 -10.92283 -9.00637 -7.96305 -5.25367 1.45911 1.48503 1.57067 2.55341 3.36675 3.64763 3.77153 3.85535 4.20780 4.37075 4.52896 4.59870 4.62465 4.75332 4.78341 4.89034 4.92173 4.98862 5.12506 5.18576 5.23196 5.30753 5.38393 5.44202 5.48512 5.58190 5.65547 6.26390 7.32008 8.09079 8.33247 9.27663 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.094474 B = 0.008034 C = 0.007700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 296.305439 B = 3484.493553 C = 3635.393330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.093 4.093 3 H 0.078 0.922 4 C -0.115 4.115 5 C -0.112 4.112 6 C -0.096 4.096 7 H 0.063 0.937 8 C 0.159 3.841 9 N -0.745 5.745 10 C -0.250 4.250 11 H 0.074 0.926 12 C -0.077 4.077 13 N -0.971 5.971 14 Si 0.977 3.023 15 H -0.285 1.285 16 H -0.293 1.293 17 H -0.269 1.269 18 C -0.105 4.105 19 H 0.063 0.937 20 H 0.050 0.950 21 H 0.061 0.939 22 H 0.064 0.936 23 H 0.072 0.928 24 H 0.042 0.958 25 H 0.052 0.948 26 H 0.017 0.983 27 H 0.016 0.984 28 H 0.374 0.626 29 H 0.252 0.748 30 H 0.068 0.932 31 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.926 9.014 0.227 14.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.112 4.112 3 H 0.096 0.904 4 C -0.153 4.153 5 C -0.150 4.150 6 C -0.115 4.115 7 H 0.082 0.918 8 C 0.032 3.968 9 N -0.388 5.388 10 C -0.381 4.381 11 H 0.092 0.908 12 C -0.269 4.269 13 N -0.622 5.622 14 Si 0.806 3.194 15 H -0.212 1.212 16 H -0.220 1.220 17 H -0.194 1.194 18 C -0.143 4.143 19 H 0.082 0.918 20 H 0.069 0.931 21 H 0.081 0.919 22 H 0.083 0.917 23 H 0.090 0.910 24 H 0.061 0.939 25 H 0.071 0.929 26 H 0.035 0.965 27 H 0.034 0.966 28 H 0.205 0.795 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.959 8.884 0.093 14.898 hybrid contribution 0.959 -0.894 -0.020 1.311 sum -11.000 7.990 0.073 13.596 Atomic orbital electron populations 1.21852 0.93843 1.01773 1.02241 1.21727 0.96544 0.99187 0.93714 0.90390 1.22225 0.99179 0.96188 0.97683 1.22264 0.98811 0.98260 0.95696 1.22237 0.98300 0.95728 0.95218 0.91820 1.20819 0.88307 0.92283 0.95354 1.42594 1.31457 1.30522 1.34217 1.19690 1.07697 1.02592 1.08157 0.90775 1.25620 0.99047 1.03064 0.99204 1.69829 1.22653 1.43350 1.26387 0.85087 0.78184 0.78967 0.77205 1.21218 1.21967 1.19411 1.22426 0.95569 0.98568 0.97786 0.91825 0.93067 0.91945 0.91699 0.90976 0.93868 0.92913 0.96513 0.96620 0.79460 0.93929 0.91342 0.90957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 8.84 71.98 0.64 -1.88 16 2 C -0.09 -2.06 3.50 -10.07 -0.04 -2.09 16 3 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 4 C -0.12 -2.88 6.46 31.32 0.20 -2.68 16 5 C -0.11 -3.75 5.97 31.67 0.19 -3.56 16 6 C -0.10 -3.30 2.96 -9.48 -0.03 -3.33 16 7 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 8 C 0.16 6.80 5.70 86.38 0.49 7.29 16 9 N -0.75 -40.21 5.45 -343.44 -1.87 -42.08 16 10 C -0.25 -14.61 9.99 84.03 0.84 -13.77 16 11 H 0.07 4.17 7.83 -2.91 -0.02 4.14 16 12 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 13 N -0.97 -61.31 13.06 21.65 0.28 -61.03 16 14 Si 0.98 47.30 29.55 68.60 2.03 49.32 16 15 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 16 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 17 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 18 C -0.11 -2.76 5.81 31.69 0.18 -2.57 16 19 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 20 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 21 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 22 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.07 1.63 7.67 -2.39 -0.02 1.61 16 24 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 25 H 0.05 1.85 8.01 -2.39 -0.02 1.83 16 26 H 0.02 0.73 8.10 -2.39 -0.02 0.71 16 27 H 0.02 0.68 8.14 -2.38 -0.02 0.66 16 28 H 0.37 21.31 7.53 -92.71 -0.70 20.61 16 29 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 30 H 0.07 1.76 7.76 -2.38 -0.02 1.75 16 31 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 Total: -1.00 -64.74 252.59 3.77 -60.98 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 0.38 Total: 19.53 kcal Atomic # 6 Polarization: -29.68 SS G_CDS: 2.95 Total: -26.73 kcal Atomic # 7 Polarization: -101.52 SS G_CDS: -1.59 Total: -103.11 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.32 kcal Total: -64.74 3.77 -60.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230418140.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.958 kcal (2) G-P(sol) polarization free energy of solvation -64.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds