Wall clock time and date at job start Thu Apr 9 2020 13:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 110.01895 * 2 1 4 4 C 1.54756 * 110.01166 * 238.61596 * 2 1 3 5 5 C 1.54890 * 103.96440 * 217.12393 * 4 2 1 6 6 C 1.54887 * 102.91108 * 37.92718 * 5 4 2 7 7 C 1.53877 * 110.03283 * 121.39456 * 2 1 3 8 8 H 1.08993 * 110.03066 * 238.56469 * 7 2 1 9 9 C 1.52997 * 110.03327 * 0.02562 * 7 2 1 10 10 N 1.46491 * 109.47305 * 183.62070 * 9 7 2 11 11 C 1.36943 * 120.00428 * 180.02562 * 10 9 7 12 12 H 1.07999 * 119.99482 * 359.97438 * 11 10 9 13 13 C 1.38806 * 120.00355 * 180.02562 * 11 10 9 14 14 N 1.31630 * 119.99731 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00317 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46735 * 89.99637 * 15 13 11 17 17 H 1.48497 * 109.47533 * 209.99869 * 15 13 11 18 18 H 1.48497 * 109.46996 * 330.00174 * 15 13 11 19 19 H 1.09005 * 109.46682 * 298.60362 * 1 2 3 20 20 H 1.09000 * 109.47061 * 58.60073 * 1 2 3 21 21 H 1.09001 * 109.47121 * 178.60699 * 1 2 3 22 22 H 1.09005 * 110.69163 * 98.47744 * 4 2 1 23 23 H 1.08999 * 110.50647 * 335.68360 * 4 2 1 24 24 H 1.09002 * 110.75897 * 279.51836 * 5 4 2 25 25 H 1.09006 * 110.75292 * 156.33066 * 5 4 2 26 26 H 1.08998 * 110.49004 * 80.64153 * 6 5 4 27 27 H 1.09001 * 110.48678 * 203.15431 * 6 5 4 28 28 H 1.09005 * 109.47058 * 303.61941 * 9 7 2 29 29 H 1.09001 * 109.47333 * 63.61350 * 9 7 2 30 30 H 0.97009 * 119.99997 * 359.97438 * 10 9 7 31 31 H 0.97002 * 119.99402 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9032 1.0241 0.0000 4 6 2.0596 -0.7573 -1.2414 5 6 3.3137 -1.5010 -0.7186 6 6 2.8875 -1.9404 0.7041 7 6 2.0572 -0.7531 1.2340 8 1 2.6868 -0.0947 1.8324 9 6 0.8863 -1.2666 2.0743 10 7 1.3997 -1.9055 3.2885 11 6 0.5302 -2.4439 4.1991 12 1 -0.5342 -2.3972 4.0223 13 6 1.0166 -3.0487 5.3499 14 7 2.3139 -3.1051 5.5656 15 14 -0.1695 -3.7826 6.5924 16 1 -0.4259 -5.2050 6.2515 17 1 0.4224 -3.6981 7.9517 18 1 -1.4481 -3.0280 6.5615 19 1 -0.3633 0.4920 0.9023 20 1 -0.3633 0.5354 -0.8772 21 1 -0.3633 -1.0274 -0.0250 22 1 2.3327 -0.0579 -2.0317 23 1 1.3161 -1.4688 -1.6005 24 1 4.1710 -0.8294 -0.6749 25 1 3.5356 -2.3684 -1.3405 26 1 2.2771 -2.8423 0.6581 27 1 3.7638 -2.1055 1.3310 28 1 0.2416 -0.4314 2.3480 29 1 0.3146 -1.9923 1.4958 30 1 2.3558 -1.9477 3.4472 31 1 2.6539 -3.5282 6.3696 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230673192.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:23 Heat of formation + Delta-G solvation = -32.210936 kcal Electronic energy + Delta-G solvation = -11353.054207 eV Core-core repulsion = 9439.845659 eV Total energy + Delta-G solvation = -1913.208548 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.91337 -36.17623 -33.28364 -32.16470 -29.99253 -26.42592 -25.69659 -23.99452 -21.50849 -19.86251 -18.82313 -17.22113 -16.42558 -15.81611 -15.33730 -15.03081 -14.63399 -14.46132 -13.58533 -13.26786 -13.00375 -12.86347 -12.75830 -12.18783 -11.87229 -11.80079 -11.65272 -11.49108 -11.43096 -11.33737 -11.13157 -10.84656 -8.98205 -7.95795 -5.24487 1.45291 1.47812 1.56356 2.55331 3.36947 3.68637 3.74623 3.85587 4.22380 4.42989 4.50974 4.55630 4.68717 4.69326 4.78935 4.81041 5.01264 5.02365 5.11101 5.17895 5.22918 5.33934 5.39089 5.47531 5.51930 5.56607 5.65894 6.27170 7.32334 8.10477 8.33962 9.28077 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.068579 B = 0.009489 C = 0.008704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.188462 B = 2950.073018 C = 3216.013502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 H 0.080 0.920 4 C -0.112 4.112 5 C -0.119 4.119 6 C -0.114 4.114 7 C -0.095 4.095 8 H 0.056 0.944 9 C 0.160 3.840 10 N -0.748 5.748 11 C -0.247 4.247 12 H 0.074 0.926 13 C -0.079 4.079 14 N -0.971 5.971 15 Si 0.976 3.024 16 H -0.286 1.286 17 H -0.293 1.293 18 H -0.269 1.269 19 H 0.048 0.952 20 H 0.070 0.930 21 H 0.048 0.952 22 H 0.085 0.915 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.047 0.953 27 H 0.046 0.954 28 H 0.020 0.980 29 H 0.018 0.982 30 H 0.372 0.628 31 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.992 5.387 -13.249 14.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.104 4.104 3 H 0.098 0.902 4 C -0.149 4.149 5 C -0.156 4.156 6 C -0.152 4.152 7 C -0.114 4.114 8 H 0.075 0.925 9 C 0.035 3.965 10 N -0.390 5.390 11 C -0.378 4.378 12 H 0.092 0.908 13 C -0.271 4.271 14 N -0.622 5.622 15 Si 0.805 3.195 16 H -0.213 1.213 17 H -0.220 1.220 18 H -0.194 1.194 19 H 0.067 0.933 20 H 0.089 0.911 21 H 0.067 0.933 22 H 0.103 0.897 23 H 0.084 0.916 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.037 0.963 29 H 0.036 0.964 30 H 0.204 0.796 31 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -1.184 5.363 -13.193 14.290 hybrid contribution -0.075 -0.607 1.235 1.378 sum -1.259 4.756 -11.958 12.930 Atomic orbital electron populations 1.21931 0.94999 1.01663 1.01711 1.21807 0.95993 0.99198 0.93421 0.90173 1.22512 0.96826 0.98975 0.96626 1.22484 0.98244 1.00279 0.94603 1.22304 0.98526 0.97278 0.97095 1.21937 0.96104 0.96910 0.96415 0.92506 1.21064 0.95027 0.94064 0.86381 1.42677 1.05893 1.69005 1.21434 1.19661 0.90378 1.28485 0.99319 0.90846 1.25614 0.97611 1.03028 1.00799 1.69837 1.12716 1.51095 1.28509 0.85102 0.78180 0.78247 0.78020 1.21310 1.21970 1.19412 0.93328 0.91075 0.93260 0.89683 0.91565 0.90848 0.90857 0.93372 0.93544 0.96266 0.96380 0.79621 0.93997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 7.89 71.98 0.57 -3.15 16 2 C -0.09 -2.23 3.51 -9.90 -0.03 -2.26 16 3 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 4 C -0.11 -2.47 6.40 31.84 0.20 -2.26 16 5 C -0.12 -2.90 6.89 31.88 0.22 -2.68 16 6 C -0.11 -3.82 6.02 31.67 0.19 -3.63 16 7 C -0.09 -3.28 2.98 -10.07 -0.03 -3.31 16 8 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 9 C 0.16 6.85 4.36 86.38 0.38 7.23 16 10 N -0.75 -40.37 5.43 -343.47 -1.87 -42.24 16 11 C -0.25 -14.44 9.99 84.03 0.84 -13.60 16 12 H 0.07 4.13 7.83 -2.91 -0.02 4.11 16 13 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 14 N -0.97 -61.32 13.06 21.65 0.28 -61.04 16 15 Si 0.98 47.43 29.55 68.60 2.03 49.46 16 16 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 17 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 18 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 19 H 0.05 1.34 6.65 -2.38 -0.02 1.32 16 20 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 21 H 0.05 1.35 6.82 -2.39 -0.02 1.34 16 22 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 23 H 0.07 1.45 7.85 -2.39 -0.02 1.43 16 24 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 26 H 0.05 1.78 7.78 -2.39 -0.02 1.76 16 27 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.02 0.83 6.51 -2.38 -0.02 0.82 16 29 H 0.02 0.79 6.86 -2.39 -0.02 0.77 16 30 H 0.37 21.31 7.51 -92.70 -0.70 20.61 16 31 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -65.07 246.00 3.64 -61.43 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: 0.39 Total: 20.27 kcal Atomic # 6 Polarization: -30.67 SS G_CDS: 2.80 Total: -27.87 kcal Atomic # 7 Polarization: -101.70 SS G_CDS: -1.58 Total: -103.28 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.46 kcal Total: -65.07 3.64 -61.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230673192.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.222 kcal (2) G-P(sol) polarization free energy of solvation -65.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds