Wall clock time and date at job start Thu Apr 9 2020 13:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 110.05253 * 2 1 4 4 C 1.53874 * 110.03475 * 121.41361 * 2 1 3 5 5 C 1.54265 * 106.59859 * 119.28476 * 4 2 1 6 6 C 1.54886 * 104.19390 * 23.61260 * 5 4 2 7 7 C 1.54264 * 110.03462 * 238.58345 * 2 1 3 8 8 H 1.09003 * 110.48111 * 335.91573 * 7 2 1 9 9 C 1.53004 * 110.48806 * 98.42081 * 7 2 1 10 10 N 1.46499 * 109.46939 * 185.00088 * 9 7 2 11 11 C 1.36932 * 119.99549 * 180.02562 * 10 9 7 12 12 H 1.08003 * 120.00354 * 0.02562 * 11 10 9 13 13 C 1.38817 * 120.00011 * 179.97438 * 11 10 9 14 14 N 1.31619 * 120.00154 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 119.99635 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.47297 * 269.99668 * 15 13 11 17 17 H 1.48503 * 109.47261 * 149.99848 * 15 13 11 18 18 H 1.48500 * 109.47454 * 29.99841 * 15 13 11 19 19 H 1.09004 * 109.46600 * 181.41882 * 1 2 3 20 20 H 1.08997 * 109.47210 * 301.41824 * 1 2 3 21 21 H 1.08998 * 109.47062 * 61.41733 * 1 2 3 22 22 H 1.08999 * 110.02861 * 238.57370 * 4 2 1 23 23 H 1.09007 * 110.02852 * 0.02562 * 4 2 1 24 24 H 1.09007 * 110.48137 * 142.28739 * 5 4 2 25 25 H 1.08996 * 110.48537 * 264.93066 * 5 4 2 26 26 H 1.09003 * 110.75771 * 203.74002 * 6 5 4 27 27 H 1.09001 * 110.75892 * 80.37482 * 6 5 4 28 28 H 1.09008 * 109.46680 * 65.00397 * 9 7 2 29 29 H 1.08994 * 109.47425 * 305.00325 * 9 7 2 30 30 H 0.96993 * 120.00302 * 0.02562 * 10 9 7 31 31 H 0.96998 * 119.99442 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0572 -0.7535 1.2337 5 6 2.8876 -1.9406 0.7036 6 6 3.3137 -1.5007 -0.7190 7 6 2.0585 -0.7554 -1.2368 8 1 1.3134 -1.4643 -1.5980 9 6 2.4392 0.2297 -2.3439 10 7 2.8241 -0.5125 -3.5469 11 6 3.2072 0.1630 -4.6747 12 1 3.2261 1.2429 -4.6772 13 6 3.5725 -0.5401 -5.8145 14 7 3.9413 0.1091 -6.8984 15 14 3.5406 -2.4079 -5.8098 16 1 4.8614 -2.9245 -5.3694 17 1 3.2478 -2.9014 -7.1795 18 1 2.4872 -2.8827 -4.8770 19 1 -0.3633 -1.0274 0.0254 20 1 -0.3633 0.5357 0.8770 21 1 -0.3633 0.4917 -0.9024 22 1 2.6867 -0.0952 1.8324 23 1 1.2229 -1.1196 1.8323 24 1 3.7639 -2.1035 1.3311 25 1 2.2773 -2.8425 0.6573 26 1 3.5327 -2.3678 -1.3422 27 1 4.1711 -0.8290 -0.6751 28 1 3.2768 0.8433 -2.0119 29 1 1.5866 0.8702 -2.5693 30 1 2.8075 -1.4822 -3.5445 31 1 4.1968 -0.3824 -7.6946 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230673196.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:27 Heat of formation + Delta-G solvation = -14.974963 kcal Electronic energy + Delta-G solvation = -11305.268351 eV Core-core repulsion = 9392.807211 eV Total energy + Delta-G solvation = -1912.461140 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.58817 -34.48952 -31.47974 -31.03343 -28.88174 -25.49809 -23.85360 -21.67263 -20.06219 -19.35144 -17.48586 -15.37214 -14.76485 -14.36473 -13.88717 -13.54442 -13.09519 -12.80381 -12.54971 -12.25706 -11.68166 -11.46431 -10.87921 -10.85848 -10.53048 -10.39155 -10.32775 -10.21207 -10.10733 -9.95370 -9.53155 -8.83160 -7.15743 -5.72078 -3.06291 3.40736 3.43843 3.48056 4.63674 4.76279 4.82441 4.90902 5.40423 5.52602 5.55624 5.64645 5.65979 5.70839 5.84884 5.89425 5.95389 6.07007 6.08107 6.13811 6.32821 6.38558 6.49507 6.53741 6.57779 6.81426 6.95113 8.05655 8.47685 9.27667 10.00365 10.21405 11.46720 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.057880 B = 0.010354 C = 0.009568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.639684 B = 2703.748152 C = 2925.700882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 H 0.072 0.928 4 C -0.119 4.119 5 C -0.126 4.126 6 C -0.116 4.116 7 C -0.098 4.098 8 H 0.072 0.928 9 C 0.165 3.835 10 N -0.756 5.756 11 C -0.241 4.241 12 H 0.089 0.911 13 C 0.001 3.999 14 N -0.937 5.937 15 Si 0.884 3.116 16 H -0.284 1.284 17 H -0.291 1.291 18 H -0.277 1.277 19 H 0.051 0.949 20 H 0.049 0.951 21 H 0.057 0.943 22 H 0.059 0.941 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.026 0.974 29 H 0.024 0.976 30 H 0.360 0.640 31 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.513 -3.358 15.532 16.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.110 4.110 3 H 0.091 0.909 4 C -0.156 4.156 5 C -0.163 4.163 6 C -0.154 4.154 7 C -0.117 4.117 8 H 0.091 0.909 9 C 0.038 3.962 10 N -0.401 5.401 11 C -0.371 4.371 12 H 0.107 0.893 13 C -0.194 4.194 14 N -0.585 5.585 15 Si 0.715 3.285 16 H -0.211 1.211 17 H -0.218 1.218 18 H -0.204 1.204 19 H 0.070 0.930 20 H 0.068 0.932 21 H 0.076 0.924 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.044 0.956 29 H 0.042 0.958 30 H 0.193 0.807 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.467 -3.160 15.380 16.324 hybrid contribution 0.021 -1.319 -0.197 1.334 sum -4.446 -4.479 15.182 16.442 Atomic orbital electron populations 1.21871 0.95343 1.01393 1.01395 1.21728 0.95380 0.99637 0.94250 0.90912 1.22212 0.99075 0.97074 0.97275 1.22369 0.99119 0.97818 0.97021 1.22516 0.97954 1.00017 0.94885 1.22293 0.97012 0.97643 0.94769 0.90948 1.20680 0.96895 0.93021 0.85631 1.42722 1.82346 1.04410 1.10651 1.19094 1.36440 0.92974 0.88561 0.89302 1.24673 1.01581 0.97272 0.95866 1.69707 1.51913 1.34212 1.02673 0.86536 0.77830 0.87427 0.76722 1.21094 1.21769 1.20354 0.92960 0.93225 0.92431 0.92220 0.92202 0.92194 0.92117 0.91880 0.91209 0.95616 0.95808 0.80724 0.93145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 8.84 37.16 0.33 -1.39 16 2 C -0.09 -1.21 3.07 -89.50 -0.27 -1.48 16 3 H 0.07 0.98 7.84 -51.93 -0.41 0.57 16 4 C -0.12 -1.38 6.46 -25.61 -0.17 -1.54 16 5 C -0.13 -1.54 6.83 -25.07 -0.17 -1.71 16 6 C -0.12 -1.77 6.19 -24.74 -0.15 -1.92 16 7 C -0.10 -1.59 2.42 -88.96 -0.22 -1.81 16 8 H 0.07 1.21 7.85 -51.93 -0.41 0.80 16 9 C 0.16 3.34 5.54 -4.04 -0.02 3.32 16 10 N -0.76 -18.74 5.30 -59.91 -0.32 -19.06 16 11 C -0.24 -7.06 10.47 -15.06 -0.16 -7.22 16 12 H 0.09 2.78 8.06 -52.48 -0.42 2.36 16 13 C 0.00 0.04 5.50 -17.43 -0.10 -0.05 16 14 N -0.94 -30.12 13.97 55.49 0.78 -29.35 16 15 Si 0.88 22.71 27.73 -169.99 -4.71 17.99 16 16 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 17 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 18 H -0.28 -6.73 6.52 56.52 0.37 -6.36 16 19 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 20 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 21 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 23 H 0.06 0.63 7.67 -51.92 -0.40 0.23 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.07 1.10 7.97 -51.93 -0.41 0.69 16 28 H 0.03 0.53 8.02 -51.92 -0.42 0.12 16 29 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.36 8.71 5.50 -40.82 -0.22 8.48 16 31 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 LS Contribution 249.40 15.07 3.76 3.76 Total: -1.00 -31.30 249.40 -6.67 -37.97 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -5.24 Total: 2.50 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: -0.93 Total: -13.81 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: 0.46 Total: -48.41 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -4.71 Total: 17.99 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -31.30 -6.67 -37.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230673196.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.991 kcal (2) G-P(sol) polarization free energy of solvation -31.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds