Wall clock time and date at job start Thu Apr 9 2020 13:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47085 * 2 1 4 4 C 1.53006 * 109.47312 * 119.99575 * 2 1 3 5 5 C 1.52999 * 115.54759 * 296.24022 * 4 2 1 6 6 N 1.46494 * 109.47064 * 268.81180 * 5 4 2 7 7 C 1.36944 * 120.00122 * 184.90734 * 6 5 4 8 8 H 1.07992 * 119.99682 * 0.28271 * 7 6 5 9 9 C 1.38812 * 119.99880 * 180.27488 * 7 6 5 10 10 N 1.31615 * 120.00333 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99586 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47607 * 0.02562 * 11 9 7 13 13 H 1.48507 * 109.46973 * 120.00364 * 11 9 7 14 14 H 1.48500 * 109.47019 * 239.99949 * 11 9 7 15 15 C 1.52998 * 117.51442 * 81.93644 * 4 2 1 16 16 C 1.52993 * 117.50025 * 150.56566 * 4 2 1 17 17 H 1.09006 * 109.47588 * 305.82154 * 1 2 3 18 18 H 1.08999 * 109.47425 * 65.82072 * 1 2 3 19 19 H 1.09006 * 109.47307 * 185.82230 * 1 2 3 20 20 H 1.08999 * 109.47549 * 239.99765 * 2 1 3 21 21 H 1.09001 * 109.47279 * 180.02562 * 3 2 1 22 22 H 1.09005 * 109.47055 * 299.99942 * 3 2 1 23 23 H 1.08994 * 109.47367 * 59.99922 * 3 2 1 24 24 H 1.09004 * 109.46622 * 148.81450 * 5 4 2 25 25 H 1.08994 * 109.47657 * 28.81611 * 5 4 2 26 26 H 0.97001 * 120.00435 * 5.18317 * 6 5 4 27 27 H 0.97004 * 120.00097 * 179.97438 * 10 9 7 28 28 H 1.09004 * 117.49797 * 214.97194 * 15 4 2 29 29 H 1.09001 * 117.50040 * 359.97438 * 15 4 2 30 30 H 1.09004 * 117.49919 * 359.97438 * 16 4 2 31 31 H 1.09002 * 117.49869 * 144.97478 * 16 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6846 -0.0616 2.5833 6 7 2.7526 0.8632 2.9706 7 6 2.7031 1.4971 4.1836 8 1 1.8790 1.3117 4.8564 9 6 3.7122 2.3778 4.5481 10 7 4.7164 2.6040 3.7280 11 14 3.6449 3.2418 6.2029 12 1 2.4231 2.8185 6.9331 13 1 4.8461 2.8818 6.9985 14 1 3.6125 4.7115 5.9930 15 6 2.0962 -2.2496 1.2097 16 6 3.3898 -1.4348 1.1515 17 1 -0.3634 0.6015 0.8333 18 1 -0.3634 0.4209 -0.9375 19 1 -0.3634 -1.0224 0.1043 20 1 1.8933 -0.5138 -0.8899 21 1 3.1299 1.4425 -0.0005 22 1 1.6766 1.9563 -0.8900 23 1 1.6766 1.9564 0.8899 24 1 1.5726 -0.8288 3.3495 25 1 0.7486 0.4873 2.4793 26 1 3.4929 1.0298 2.3664 27 1 5.4214 3.2197 3.9826 28 1 1.8800 -2.7853 2.1341 29 1 1.7693 -2.7417 0.2937 30 1 3.9143 -1.3908 0.1970 31 1 4.0249 -1.4340 2.0374 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232530890.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:37 Heat of formation + Delta-G solvation = 17.317919 kcal Electronic energy + Delta-G solvation = -11477.190655 eV Core-core repulsion = 9566.129840 eV Total energy + Delta-G solvation = -1911.060815 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.51046 -33.83471 -32.88987 -30.63276 -26.69668 -25.89446 -22.87843 -22.01286 -21.46349 -18.12162 -16.78504 -15.20654 -14.84719 -14.34818 -13.50086 -13.21696 -12.75874 -12.64034 -12.05995 -11.89882 -11.56788 -11.11655 -10.94065 -10.80574 -10.72064 -10.65053 -10.16614 -9.77707 -9.75545 -9.52418 -9.14967 -8.79444 -6.81361 -5.70135 -2.97132 3.46432 3.52119 3.54292 4.24000 4.67478 5.05853 5.23989 5.38015 5.45048 5.63517 5.72805 5.79833 5.96001 6.03756 6.09111 6.26276 6.37119 6.37749 6.42657 6.47425 6.56531 6.68950 6.69645 6.90716 7.00151 7.06752 7.76274 8.49556 9.61003 10.21936 10.58104 11.52850 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.053739 B = 0.010888 C = 0.010485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.909986 B = 2571.081890 C = 2669.777316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.053 4.053 3 C -0.143 4.143 4 C -0.119 4.119 5 C 0.188 3.812 6 N -0.727 5.727 7 C -0.236 4.236 8 H 0.069 0.931 9 C -0.015 4.015 10 N -0.933 5.933 11 Si 0.904 3.096 12 H -0.281 1.281 13 H -0.293 1.293 14 H -0.292 1.292 15 C -0.180 4.180 16 C -0.165 4.165 17 H 0.059 0.941 18 H 0.047 0.953 19 H 0.050 0.950 20 H 0.058 0.942 21 H 0.055 0.945 22 H 0.040 0.960 23 H 0.072 0.928 24 H 0.018 0.982 25 H 0.022 0.978 26 H 0.386 0.614 27 H 0.253 0.747 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.811 -6.256 -6.966 11.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.071 4.071 3 C -0.201 4.201 4 C -0.120 4.120 5 C 0.061 3.939 6 N -0.371 5.371 7 C -0.367 4.367 8 H 0.087 0.913 9 C -0.211 4.211 10 N -0.582 5.582 11 Si 0.736 3.264 12 H -0.206 1.206 13 H -0.220 1.220 14 H -0.220 1.220 15 C -0.217 4.217 16 C -0.202 4.202 17 H 0.078 0.922 18 H 0.066 0.934 19 H 0.069 0.931 20 H 0.077 0.923 21 H 0.074 0.926 22 H 0.060 0.940 23 H 0.091 0.909 24 H 0.036 0.964 25 H 0.039 0.961 26 H 0.221 0.779 27 H 0.063 0.937 28 H 0.107 0.893 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.877 -6.201 -6.794 10.915 hybrid contribution 0.333 0.542 0.737 0.973 sum -5.543 -5.659 -6.057 9.972 Atomic orbital electron populations 1.21807 0.95574 1.01336 1.01287 1.20581 0.95145 0.96470 0.94911 1.21795 1.01443 0.95128 1.01684 1.21787 1.00647 0.92366 0.97179 1.20175 0.92178 0.91797 0.89790 1.42426 1.24922 1.50490 1.19277 1.19301 1.05342 1.18169 0.93907 0.91321 1.24705 0.97394 1.00634 0.98360 1.69676 1.12429 1.39970 1.36115 0.86150 0.77111 0.79320 0.83839 1.20645 1.21999 1.21966 1.22991 1.02945 0.93668 1.02133 1.22887 0.90751 1.03747 1.02827 0.92187 0.93404 0.93116 0.92343 0.92585 0.94043 0.90879 0.96377 0.96054 0.77937 0.93696 0.89256 0.89677 0.89669 0.88280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 8.94 37.15 0.33 -1.66 16 2 C -0.05 -0.82 2.74 -90.62 -0.25 -1.07 16 3 C -0.14 -2.49 8.41 37.16 0.31 -2.18 16 4 C -0.12 -2.08 1.18 -154.51 -0.18 -2.26 16 5 C 0.19 3.98 5.42 -4.05 -0.02 3.95 16 6 N -0.73 -18.67 4.71 -59.91 -0.28 -18.96 16 7 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 10 N -0.93 -28.54 13.06 55.49 0.72 -27.82 16 11 Si 0.90 22.78 29.55 -169.99 -5.02 17.75 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 14 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 15 C -0.18 -2.72 9.90 -26.73 -0.26 -2.98 16 16 C -0.16 -2.81 9.45 -26.74 -0.25 -3.06 16 17 H 0.06 0.90 6.87 -51.93 -0.36 0.54 16 18 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 19 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 20 H 0.06 0.84 8.10 -51.93 -0.42 0.42 16 21 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 22 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.07 1.47 7.04 -51.93 -0.37 1.11 16 24 H 0.02 0.40 7.87 -51.93 -0.41 -0.01 16 25 H 0.02 0.46 6.52 -51.93 -0.34 0.12 16 26 H 0.39 10.43 7.06 -40.82 -0.29 10.14 16 27 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.09 1.33 8.03 -51.93 -0.42 0.91 16 29 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 31 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 LS Contribution 254.81 15.07 3.84 3.84 Total: -1.00 -29.73 254.81 -6.41 -36.14 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -5.10 Total: 5.71 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: -0.57 Total: -16.67 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: 0.44 Total: -46.78 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -29.73 -6.41 -36.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232530890.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.462 kcal (2) G-P(sol) polarization free energy of solvation -29.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds