Wall clock time and date at job start Thu Apr 9 2020 13:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47037 * 2 1 4 4 C 1.53001 * 109.47121 * 179.97438 * 3 2 1 5 5 H 1.09002 * 115.55911 * 29.29701 * 4 3 2 6 6 C 1.53000 * 117.50223 * 243.61012 * 4 3 2 7 7 C 1.52997 * 117.49889 * 174.98273 * 4 3 2 8 8 H 1.09001 * 117.51673 * 0.02562 * 7 4 3 9 9 N 1.46893 * 117.50042 * 214.98066 * 7 4 3 10 10 C 1.46907 * 110.99841 * 154.99090 * 9 7 4 11 11 C 1.50704 * 109.46992 * 180.02562 * 10 9 7 12 12 H 1.08002 * 119.99809 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00018 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99701 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00153 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47102 * 89.99936 * 15 13 11 17 17 H 1.48501 * 109.47227 * 210.00177 * 15 13 11 18 18 H 1.48503 * 109.47181 * 329.99790 * 15 13 11 19 19 H 1.09005 * 109.46972 * 179.97438 * 1 2 3 20 20 H 1.08991 * 109.47365 * 300.00027 * 1 2 3 21 21 H 1.09004 * 109.46993 * 60.00360 * 1 2 3 22 22 H 1.08998 * 109.47700 * 239.99821 * 2 1 3 23 23 H 1.09004 * 109.46993 * 119.99640 * 2 1 3 24 24 H 1.08996 * 109.46714 * 60.00110 * 3 2 1 25 25 H 1.08994 * 109.46846 * 299.99837 * 3 2 1 26 26 H 1.08990 * 117.49990 * 145.01974 * 6 4 3 27 27 H 1.09004 * 117.49237 * 359.97438 * 6 4 3 28 28 H 1.00897 * 111.00469 * 31.03831 * 9 7 4 29 29 H 1.08998 * 109.46689 * 299.99678 * 10 9 7 30 30 H 1.08996 * 109.47369 * 60.00455 * 10 9 7 31 31 H 0.97004 * 119.99626 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 4.0405 0.5849 -0.4802 6 6 4.2760 2.0460 1.2165 7 6 4.2764 2.7945 -0.1179 8 1 3.6515 3.6841 -0.1960 9 7 5.5369 2.8374 -0.8710 10 6 5.7858 4.1833 -1.4046 11 6 7.0841 4.1881 -2.1698 12 1 7.6663 3.2821 -2.2512 13 6 7.5287 5.3492 -2.7660 14 7 6.8194 6.4523 -2.6673 15 14 9.1376 5.3550 -3.7150 16 1 8.8745 5.0193 -5.1374 17 1 9.7571 6.7020 -3.6307 18 1 10.0603 4.3484 -3.1313 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 1.8934 -0.5138 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 1.6766 1.9563 0.8900 25 1 1.6766 1.9563 -0.8900 26 1 5.2108 1.5854 1.5355 27 1 3.6503 2.4433 2.0158 28 1 5.5408 2.1494 -1.6091 29 1 4.9708 4.4664 -2.0708 30 1 5.8462 4.8951 -0.5814 31 1 7.1323 7.2692 -3.0864 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233305941.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:48 Heat of formation + Delta-G solvation = -1.471285 kcal Electronic energy + Delta-G solvation = -10659.705423 eV Core-core repulsion = 8747.829847 eV Total energy + Delta-G solvation = -1911.875576 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -37.88678 -34.59147 -33.17747 -31.36327 -27.25727 -25.92997 -21.98469 -21.76133 -20.31007 -20.16141 -16.37855 -15.35822 -14.92858 -14.64957 -14.19676 -13.36444 -13.25609 -12.54647 -12.42251 -11.94873 -11.81718 -11.25073 -11.20204 -10.85014 -10.82103 -10.69867 -10.65911 -10.05804 -9.91400 -9.39080 -9.08526 -8.46609 -7.19160 -6.02753 -4.04903 3.32574 3.38398 3.43320 4.26436 4.42830 4.74244 5.03463 5.13031 5.22532 5.33181 5.43374 5.45939 5.66492 5.78164 5.86025 5.94714 6.02350 6.06325 6.22251 6.28856 6.32562 6.51850 6.65146 7.28597 7.42711 7.80089 8.14199 8.39981 8.61840 9.04277 9.59962 11.08446 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.083872 B = 0.006418 C = 0.006381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 333.761963 B = 4361.408565 C = 4387.175340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.087 4.087 4 C -0.174 4.174 5 H 0.101 0.899 6 C -0.173 4.173 7 C 0.034 3.966 8 H 0.090 0.910 9 N -0.661 5.661 10 C 0.195 3.805 11 C -0.516 4.516 12 H 0.062 0.938 13 C 0.056 3.944 14 N -0.898 5.898 15 Si 0.900 3.100 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.273 1.273 19 H 0.050 0.950 20 H 0.052 0.948 21 H 0.053 0.947 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.331 0.669 29 H -0.012 1.012 30 H 0.029 0.971 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.216 -9.657 4.455 14.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.125 4.125 4 C -0.193 4.193 5 H 0.119 0.881 6 C -0.212 4.212 7 C -0.077 4.077 8 H 0.108 0.892 9 N -0.290 5.290 10 C 0.068 3.932 11 C -0.554 4.554 12 H 0.080 0.920 13 C -0.146 4.146 14 N -0.537 5.537 15 Si 0.728 3.272 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.198 1.198 19 H 0.070 0.930 20 H 0.071 0.929 21 H 0.072 0.928 22 H 0.079 0.921 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.111 0.889 27 H 0.103 0.897 28 H 0.149 0.851 29 H 0.006 0.994 30 H 0.047 0.953 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.804 -9.344 4.943 13.757 hybrid contribution 0.235 0.207 -1.195 1.235 sum -8.568 -9.136 3.748 13.074 Atomic orbital electron populations 1.21788 0.96276 1.01245 1.01712 1.21501 0.95266 0.97127 1.01925 1.21183 0.93153 0.96472 1.01659 1.22712 0.94026 0.98296 1.04297 0.88132 1.23247 1.01662 1.04619 0.91624 1.22529 0.93000 0.93625 0.98555 0.89234 1.60433 1.28536 1.09965 1.30096 1.19610 0.95653 0.83978 0.93921 1.21190 1.06076 0.96190 1.31978 0.91959 1.24991 0.97585 0.95423 0.96552 1.69969 1.38536 1.00438 1.44797 0.86465 0.83426 0.77313 0.80014 1.20702 1.21205 1.19751 0.93044 0.92896 0.92818 0.92123 0.92079 0.92149 0.91996 0.88881 0.89730 0.85096 0.99412 0.95266 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.91 37.16 0.37 -1.06 16 2 C -0.12 -1.30 5.89 -26.73 -0.16 -1.46 16 3 C -0.09 -1.10 5.50 -26.73 -0.15 -1.25 16 4 C -0.17 -2.62 5.54 -90.62 -0.50 -3.12 16 5 H 0.10 1.50 8.07 -51.93 -0.42 1.09 16 6 C -0.17 -2.77 10.10 -26.73 -0.27 -3.04 16 7 C 0.03 0.65 5.98 -67.71 -0.40 0.24 16 8 H 0.09 1.75 7.90 -51.93 -0.41 1.34 16 9 N -0.66 -14.86 6.74 -107.99 -0.73 -15.59 16 10 C 0.19 5.28 5.29 -4.97 -0.03 5.25 16 11 C -0.52 -14.94 9.32 -34.44 -0.32 -15.26 16 12 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -27.21 13.29 55.43 0.74 -26.48 16 15 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 19 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 20 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 21 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.74 7.87 -51.93 -0.41 0.33 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 27 H 0.08 1.21 8.03 -51.93 -0.42 0.79 16 28 H 0.33 7.08 8.68 -39.29 -0.34 6.74 16 29 H -0.01 -0.34 8.14 -51.93 -0.42 -0.76 16 30 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 263.82 15.07 3.98 3.98 Total: -1.00 -29.86 263.82 -7.94 -37.79 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -5.35 Total: 1.55 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: -1.56 Total: -18.16 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: 0.01 Total: -42.06 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -29.86 -7.94 -37.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233305941.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.323 kcal (2) G-P(sol) polarization free energy of solvation -29.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds