Wall clock time and date at job start Thu Apr 9 2020 14:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47061 * 2 1 4 4 H 1.09000 * 109.53530 * 304.89695 * 3 2 1 5 5 C 1.53037 * 109.50674 * 64.99976 * 3 2 1 6 6 N 1.46848 * 109.51791 * 179.11430 * 5 3 2 7 7 C 1.46852 * 111.19763 * 298.26857 * 6 5 3 8 8 C 1.53036 * 109.52642 * 61.73392 * 7 6 5 9 9 C 1.53097 * 109.48761 * 184.81073 * 3 2 1 10 10 H 1.09005 * 109.52604 * 302.29599 * 9 3 2 11 11 C 1.50699 * 109.58038 * 62.46372 * 9 3 2 12 12 H 1.08001 * 120.00103 * 34.91293 * 11 9 3 13 13 C 1.37876 * 119.99973 * 214.91841 * 11 9 3 14 14 N 1.31515 * 120.00283 * 185.38119 * 13 11 9 15 15 Si 1.86807 * 120.00031 * 5.38222 * 13 11 9 16 16 H 1.48497 * 109.46919 * 84.78085 * 15 13 11 17 17 H 1.48502 * 109.46890 * 204.78027 * 15 13 11 18 18 H 1.48500 * 109.47230 * 324.78011 * 15 13 11 19 19 H 1.09001 * 109.47237 * 60.00187 * 1 2 3 20 20 H 1.09004 * 109.47347 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.47366 * 299.99906 * 1 2 3 22 22 H 1.08996 * 109.47128 * 239.99570 * 2 1 3 23 23 H 1.09001 * 109.47237 * 119.99813 * 2 1 3 24 24 H 1.08997 * 109.45909 * 59.10547 * 5 3 2 25 25 H 1.09003 * 109.46003 * 299.12688 * 5 3 2 26 26 H 1.00903 * 110.99606 * 62.35377 * 6 5 3 27 27 H 1.08997 * 109.45802 * 181.75657 * 7 6 5 28 28 H 1.08998 * 109.45601 * 301.73058 * 7 6 5 29 29 H 1.09000 * 109.49681 * 60.76787 * 8 7 6 30 30 H 1.08997 * 109.49993 * 180.83589 * 8 7 6 31 31 H 0.96998 * 120.00605 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6073 1.9820 -0.8425 5 6 1.6355 2.1275 1.3074 6 7 2.1431 3.5054 1.3167 7 6 3.6098 3.5315 1.2490 8 6 4.0730 2.8882 -0.0600 9 6 3.5661 1.4446 -0.1210 10 1 3.9975 0.8721 0.7002 11 6 3.9695 0.8244 -1.4339 12 1 3.3564 0.9701 -2.3110 13 6 5.1212 0.0708 -1.5153 14 7 5.5299 -0.3820 -2.6805 15 14 6.1012 -0.3073 0.0295 16 1 5.5297 -1.5039 0.6977 17 1 7.5164 -0.5721 -0.3346 18 1 6.0367 0.8537 0.9532 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 1.8933 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 2.0571 1.5794 2.1500 25 1 0.5486 2.1402 1.3896 26 1 1.7370 4.0454 0.5673 27 1 3.9568 4.5639 1.2892 28 1 4.0220 2.9767 2.0919 29 1 3.6723 3.4505 -0.9034 30 1 5.1621 2.8944 -0.1031 31 1 6.3403 -0.9118 -2.7379 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238313262.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:00:15 Heat of formation + Delta-G solvation = -27.706258 kcal Electronic energy + Delta-G solvation = -11791.365581 eV Core-core repulsion = 9878.352371 eV Total energy + Delta-G solvation = -1913.013210 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.47951 -33.66889 -32.84139 -30.67407 -28.48984 -25.23666 -23.35505 -21.68125 -20.15499 -19.12568 -16.90007 -15.49642 -14.63141 -14.04317 -13.54645 -13.30165 -12.82258 -12.69631 -12.49597 -12.20349 -11.45315 -11.31207 -10.96441 -10.86490 -10.52287 -10.32898 -9.99689 -9.88512 -9.50654 -9.45798 -9.02921 -8.49815 -7.66717 -6.07526 -4.04739 3.27762 3.36452 3.38448 4.42205 4.87292 5.22339 5.45309 5.65437 5.74255 5.80713 5.92951 6.00050 6.14948 6.20026 6.21734 6.39877 6.45938 6.54381 6.62871 6.77990 6.93421 6.99271 7.18343 7.28844 7.43217 7.61435 7.77329 7.86847 8.53885 8.97586 9.56616 11.06035 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.035529 B = 0.017618 C = 0.013965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.897599 B = 1588.895393 C = 2004.530583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.110 4.110 3 C -0.106 4.106 4 H 0.058 0.942 5 C 0.057 3.943 6 N -0.690 5.690 7 C 0.051 3.949 8 C -0.147 4.147 9 C 0.020 3.980 10 H 0.029 0.971 11 C -0.503 4.503 12 H 0.070 0.930 13 C 0.070 3.930 14 N -0.903 5.903 15 Si 0.875 3.125 16 H -0.277 1.277 17 H -0.291 1.291 18 H -0.266 1.266 19 H 0.048 0.952 20 H 0.044 0.956 21 H 0.047 0.953 22 H 0.079 0.921 23 H 0.048 0.952 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.334 0.666 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.891 3.639 6.973 9.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.148 4.148 3 C -0.126 4.126 4 H 0.076 0.924 5 C -0.073 4.073 6 N -0.317 5.317 7 C -0.079 4.079 8 C -0.186 4.186 9 C 0.001 3.999 10 H 0.047 0.953 11 C -0.541 4.541 12 H 0.088 0.912 13 C -0.131 4.131 14 N -0.541 5.541 15 Si 0.703 3.297 16 H -0.203 1.203 17 H -0.217 1.217 18 H -0.190 1.190 19 H 0.067 0.933 20 H 0.063 0.937 21 H 0.066 0.934 22 H 0.098 0.902 23 H 0.067 0.933 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.150 0.850 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.758 3.593 7.588 10.180 hybrid contribution 0.882 -0.590 -0.298 1.102 sum -4.877 3.003 7.290 9.270 Atomic orbital electron populations 1.21850 0.97595 1.00458 1.00865 1.21419 0.93481 0.97229 1.02656 1.21825 0.98592 0.95749 0.96441 0.92399 1.22190 0.98785 0.88582 0.97726 1.60833 1.07018 1.12992 1.50849 1.22106 0.87798 0.99681 0.98279 1.22505 1.00842 0.99440 0.95852 1.19196 0.90989 0.92226 0.97527 0.95259 1.20957 1.08071 1.30423 0.94674 0.91155 1.25050 0.96927 0.95573 0.95574 1.69910 1.23849 1.36672 1.23678 0.86895 0.79253 0.79227 0.84361 1.20272 1.21746 1.19032 0.93301 0.93707 0.93439 0.90230 0.93350 0.91939 0.91792 0.85019 0.92208 0.92009 0.92952 0.92759 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.67 37.16 0.36 -1.93 16 2 C -0.11 -2.07 5.27 -26.74 -0.14 -2.21 16 3 C -0.11 -2.06 1.83 -90.55 -0.17 -2.23 16 4 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 5 C 0.06 0.96 5.57 -3.83 -0.02 0.94 16 6 N -0.69 -11.43 6.87 -113.82 -0.78 -12.21 16 7 C 0.05 0.90 6.55 -3.83 -0.03 0.87 16 8 C -0.15 -3.06 5.34 -26.65 -0.14 -3.20 16 9 C 0.02 0.45 1.34 -91.66 -0.12 0.33 16 10 H 0.03 0.70 5.27 -51.93 -0.27 0.43 16 11 C -0.50 -13.77 7.66 -34.44 -0.26 -14.03 16 12 H 0.07 2.11 8.06 -52.49 -0.42 1.69 16 13 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 14 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 15 Si 0.87 21.65 27.00 -169.99 -4.59 17.06 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 17 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 18 H -0.27 -6.32 6.80 56.52 0.38 -5.93 16 19 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 20 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 21 H 0.05 0.65 6.59 -51.93 -0.34 0.31 16 22 H 0.08 1.73 7.15 -51.93 -0.37 1.36 16 23 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 24 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 25 H 0.06 0.97 6.61 -51.93 -0.34 0.63 16 26 H 0.33 5.14 8.86 -39.29 -0.35 4.79 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 241.67 15.07 3.64 3.64 Total: -1.00 -28.83 241.67 -6.63 -35.46 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -5.06 Total: 2.34 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: -0.62 Total: -19.58 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: -0.01 Total: -38.92 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.59 Total: 17.06 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -28.83 -6.63 -35.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238313262.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.756 kcal (2) G-P(sol) polarization free energy of solvation -28.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds