Wall clock time and date at job start Thu Apr 9 2020 14:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86797 * 120.00090 * 2 1 4 4 H 1.48502 * 109.47404 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47208 * 299.99866 * 3 2 1 6 6 H 1.48498 * 109.47353 * 59.99536 * 3 2 1 7 7 C 1.37881 * 119.99901 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99584 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00248 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47152 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47217 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47464 * 179.97438 * 11 10 9 13 13 H 1.09005 * 110.87208 * 57.39226 * 12 11 10 14 14 C 1.55138 * 110.99181 * 181.27556 * 12 11 10 15 15 C 1.54318 * 103.01792 * 153.74669 * 14 12 11 16 16 N 1.47446 * 107.23303 * 337.71992 * 15 14 12 17 17 C 1.47840 * 108.56768 * 359.00691 * 16 15 14 18 18 H 0.97002 * 120.00368 * 0.02562 * 1 2 3 19 19 H 1.09000 * 109.46960 * 59.99556 * 9 7 2 20 20 H 1.09002 * 109.46868 * 300.00133 * 9 7 2 21 21 H 1.09000 * 109.47622 * 59.99874 * 10 9 7 22 22 H 1.09002 * 109.47272 * 299.99799 * 10 9 7 23 23 H 1.09000 * 109.47188 * 59.99933 * 11 10 9 24 24 H 1.08997 * 109.47186 * 299.99744 * 11 10 9 25 25 H 1.09003 * 110.70420 * 35.37048 * 14 12 11 26 26 H 1.09002 * 110.71153 * 272.13038 * 14 12 11 27 27 H 1.08996 * 109.89415 * 218.31078 * 15 14 12 28 28 H 1.09001 * 109.88767 * 97.12302 * 15 14 12 29 29 H 1.00901 * 110.99791 * 121.27455 * 16 15 14 30 30 H 1.08998 * 110.37675 * 142.92257 * 17 16 15 31 31 H 1.08993 * 110.37873 * 265.15861 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6620 0.0018 11 6 1.4803 -4.9871 0.0025 12 6 2.4745 -6.1500 0.0031 13 1 3.1440 -6.0881 0.8611 14 6 1.7350 -7.5134 -0.0285 15 6 2.7657 -8.4527 -0.6893 16 7 3.6968 -7.6072 -1.4588 17 6 3.2744 -6.1971 -1.3226 18 1 -0.4851 0.8400 -0.0004 19 1 0.6246 -2.5571 -0.8896 20 1 0.6240 -2.5567 0.8903 21 1 2.8713 -3.6040 0.8922 22 1 2.8726 -3.6047 -0.8877 23 1 0.8540 -5.0455 -0.8877 24 1 0.8533 -5.0442 0.8922 25 1 0.8306 -7.4474 -0.6333 26 1 1.5006 -7.8484 0.9820 27 1 2.2585 -9.1487 -1.3573 28 1 3.3115 -9.0025 0.0775 29 1 4.6462 -7.7327 -1.1408 30 1 4.1451 -5.5440 -1.2638 31 1 2.6402 -5.9082 -2.1607 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238544127.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:00:21 Heat of formation + Delta-G solvation = -50.890058 kcal Electronic energy + Delta-G solvation = -10933.328761 eV Core-core repulsion = 9019.310226 eV Total energy + Delta-G solvation = -1914.018535 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -39.71254 -36.26848 -34.33997 -31.46862 -30.04574 -27.70261 -24.88917 -22.65787 -21.50712 -21.04314 -18.45611 -17.63418 -16.54475 -16.26491 -15.62963 -14.58417 -14.48402 -14.26795 -13.93130 -13.42932 -13.07812 -12.81189 -12.75396 -12.51560 -12.33839 -12.11919 -11.71233 -11.53596 -11.33439 -11.24281 -10.85750 -10.56766 -9.40819 -8.20938 -6.32455 1.39059 1.39491 1.53050 2.40304 3.11887 3.32594 3.72199 3.82512 4.03947 4.35433 4.44398 4.51435 4.55244 4.61825 4.79516 4.95258 4.95761 5.09823 5.12831 5.15832 5.29453 5.32440 5.45702 5.54445 5.77575 5.85575 5.90267 6.25364 6.52332 6.85431 7.37088 8.91256 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.092304 B = 0.007035 C = 0.006706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 303.271624 B = 3979.127482 C = 4174.195611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.020 3.980 10 C -0.096 4.096 11 C -0.098 4.098 12 C -0.114 4.114 13 H 0.077 0.923 14 C -0.136 4.136 15 C 0.048 3.952 16 N -0.696 5.696 17 C 0.053 3.947 18 H 0.264 0.736 19 H -0.011 1.011 20 H -0.012 1.012 21 H 0.048 0.952 22 H 0.051 0.949 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.066 0.934 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.346 0.654 30 H 0.069 0.931 31 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.248 -13.539 0.167 14.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.017 4.017 10 C -0.134 4.134 11 C -0.136 4.136 12 C -0.134 4.134 13 H 0.096 0.904 14 C -0.175 4.175 15 C -0.081 4.081 16 N -0.325 5.325 17 C -0.076 4.076 18 H 0.072 0.928 19 H 0.007 0.993 20 H 0.007 0.993 21 H 0.066 0.934 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.084 0.916 26 H 0.101 0.899 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.162 0.838 30 H 0.087 0.913 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.814 -13.568 -0.483 14.769 hybrid contribution 0.175 1.318 0.906 1.609 sum 5.989 -12.251 0.423 13.643 Atomic orbital electron populations 1.70107 1.07886 1.27727 1.51872 1.26027 0.95796 1.03513 0.94726 0.85377 0.79061 0.78625 0.77857 1.18539 1.20273 1.20267 1.21777 0.93550 0.92540 1.50306 0.92235 1.19055 0.94598 0.93475 0.94540 1.21443 0.97912 0.93714 1.00337 1.21441 0.97513 0.93519 1.01120 1.22707 0.97430 0.94591 0.98663 0.90413 1.22854 0.98781 0.94181 1.01656 1.22652 0.93889 0.95717 0.95852 1.61709 1.06700 1.05680 1.58370 1.22863 0.99147 0.89434 0.96162 0.92761 0.99280 0.99311 0.93367 0.92989 0.92976 0.92767 0.91555 0.89930 0.90660 0.91292 0.83803 0.91270 0.91862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.22 13.29 21.45 0.28 -57.94 16 2 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 3 Si 0.97 44.97 29.54 68.60 2.03 46.99 16 4 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 7 C -0.54 -31.82 9.11 25.60 0.23 -31.59 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.02 1.11 4.97 29.85 0.15 1.26 16 10 C -0.10 -4.03 5.00 30.59 0.15 -3.87 16 11 C -0.10 -3.34 4.73 30.59 0.14 -3.20 16 12 C -0.11 -3.05 3.07 -9.41 -0.03 -3.08 16 13 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 14 C -0.14 -3.05 6.41 31.77 0.20 -2.84 16 15 C 0.05 0.95 7.58 86.65 0.66 1.60 16 16 N -0.70 -15.77 7.39 -504.45 -3.73 -19.50 16 17 C 0.05 1.41 6.23 86.77 0.54 1.95 16 18 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 19 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 20 H -0.01 -0.68 8.14 -2.39 -0.02 -0.69 16 21 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 22 H 0.05 2.11 7.45 -2.39 -0.02 2.09 16 23 H 0.05 1.83 8.10 -2.39 -0.02 1.81 16 24 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.07 1.57 8.04 -2.39 -0.02 1.55 16 26 H 0.08 1.61 8.14 -2.39 -0.02 1.60 16 27 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.35 6.49 8.91 -89.69 -0.80 5.69 16 30 H 0.07 1.79 8.06 -2.39 -0.02 1.77 16 31 H 0.06 1.87 8.01 -2.39 -0.02 1.85 16 Total: -1.00 -64.68 253.86 1.37 -63.31 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: 0.28 Total: 6.64 kcal Atomic # 6 Polarization: -42.01 SS G_CDS: 2.51 Total: -39.50 kcal Atomic # 7 Polarization: -73.99 SS G_CDS: -3.44 Total: -77.44 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -64.68 1.37 -63.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238544127.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.415 kcal (2) G-P(sol) polarization free energy of solvation -64.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds