Wall clock time and date at job start Thu Apr 9 2020 14:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46557 * 2 1 4 4 C 1.50695 * 109.47003 * 239.99923 * 2 1 3 5 5 H 1.08004 * 120.00358 * 239.99878 * 4 2 1 6 6 C 1.37883 * 120.00080 * 59.99894 * 4 2 1 7 7 N 1.31513 * 119.99731 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00195 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47162 * 59.99980 * 8 6 4 10 10 H 1.48500 * 109.47027 * 180.02562 * 8 6 4 11 11 H 1.48509 * 109.46978 * 300.00072 * 8 6 4 12 12 N 1.46899 * 109.46891 * 120.00177 * 2 1 3 13 13 C 1.48526 * 111.00475 * 49.42460 * 12 2 1 14 14 C 1.54938 * 103.22730 * 200.27900 * 13 12 2 15 15 C 1.54588 * 102.92312 * 37.41122 * 14 13 12 16 16 C 1.47903 * 111.00132 * 292.02283 * 12 2 1 17 17 H 1.09002 * 110.08177 * 26.40514 * 16 12 2 18 18 C 1.52998 * 109.92064 * 265.20690 * 16 12 2 19 19 H 1.08999 * 109.46802 * 172.14903 * 1 2 3 20 20 H 1.09001 * 109.46730 * 292.14397 * 1 2 3 21 21 H 1.08993 * 109.47172 * 52.14878 * 1 2 3 22 22 H 0.97001 * 120.00013 * 180.02562 * 7 6 4 23 23 H 1.09008 * 110.66816 * 318.71381 * 13 12 2 24 24 H 1.09001 * 110.66820 * 81.67032 * 13 12 2 25 25 H 1.08997 * 110.72112 * 279.05293 * 14 13 12 26 26 H 1.09004 * 110.72621 * 155.77180 * 14 13 12 27 27 H 1.08998 * 110.31427 * 219.12496 * 15 14 13 28 28 H 1.09000 * 110.30855 * 96.95780 * 15 14 13 29 29 H 1.09007 * 109.46596 * 300.95209 * 18 16 12 30 30 H 1.08996 * 109.47596 * 60.95212 * 18 16 12 31 31 H 1.09002 * 109.47387 * 180.95896 * 18 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 1.8280 -2.5198 -4.0082 10 1 1.8278 -0.4192 -5.2204 11 1 3.8075 -1.1189 -4.0078 12 7 2.0197 -0.6925 1.1994 13 6 1.3468 -2.0059 1.3678 14 6 1.5630 -2.3252 2.8684 15 6 1.4242 -0.9398 3.5402 16 6 1.7082 0.0798 2.4217 17 1 0.8300 0.7039 2.2564 18 6 2.9039 0.9542 2.8047 19 1 -0.3633 -1.0180 -0.1404 20 1 -0.3633 0.3874 0.9519 21 1 -0.3633 0.6305 -0.8114 22 1 0.7089 1.1614 -3.4844 23 1 0.2837 -1.9254 1.1409 24 1 1.8167 -2.7623 0.7392 25 1 2.5583 -2.7369 3.0356 26 1 0.7957 -3.0088 3.2319 27 1 2.1537 -0.8337 4.3430 28 1 0.4136 -0.8062 3.9262 29 1 3.7761 0.3227 2.9744 30 1 3.1146 1.6555 1.9974 31 1 2.6729 1.5070 3.7153 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252180151.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:00:24 Heat of formation + Delta-G solvation = -2.084508 kcal Electronic energy + Delta-G solvation = -11757.704489 eV Core-core repulsion = 9845.802322 eV Total energy + Delta-G solvation = -1911.902168 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -38.56415 -33.77204 -31.16958 -30.63204 -27.27434 -25.19281 -24.87526 -21.65906 -20.00994 -18.51226 -16.19458 -15.37617 -14.64183 -14.10959 -13.62888 -13.19212 -12.69722 -12.25958 -11.69639 -11.58470 -11.46980 -10.99063 -10.88290 -10.59518 -10.45955 -10.33311 -10.17918 -10.03366 -9.78122 -9.67528 -8.80849 -8.34255 -7.13965 -5.96390 -3.99017 3.35659 3.39447 3.42865 4.45681 5.03491 5.29655 5.32744 5.36488 5.60122 5.87354 6.03263 6.09991 6.17462 6.25452 6.37569 6.52572 6.60996 6.70525 6.74045 6.82984 6.87454 6.90274 7.17184 7.47439 7.74683 7.91078 8.16266 8.42023 8.65117 9.07118 9.65685 11.11527 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.057593 B = 0.012349 C = 0.011699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.055231 B = 2266.881792 C = 2392.705649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.202 3.798 3 H 0.037 0.963 4 C -0.496 4.496 5 H 0.060 0.940 6 C 0.057 3.943 7 N -0.897 5.897 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.277 1.277 12 N -0.506 5.506 13 C 0.042 3.958 14 C -0.126 4.126 15 C -0.124 4.124 16 C 0.052 3.948 17 H 0.048 0.952 18 C -0.129 4.129 19 H 0.034 0.966 20 H 0.008 0.992 21 H 0.082 0.918 22 H 0.260 0.740 23 H 0.047 0.953 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.036 -2.651 8.529 8.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.095 3.905 3 H 0.055 0.945 4 C -0.535 4.535 5 H 0.079 0.921 6 C -0.144 4.144 7 N -0.536 5.536 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.203 1.203 12 N -0.230 5.230 13 C -0.087 4.087 14 C -0.164 4.164 15 C -0.162 4.162 16 C -0.057 4.057 17 H 0.066 0.934 18 C -0.187 4.187 19 H 0.053 0.947 20 H 0.027 0.973 21 H 0.101 0.899 22 H 0.069 0.931 23 H 0.065 0.935 24 H 0.091 0.909 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.528 -2.576 8.303 8.710 hybrid contribution -0.671 -0.250 -0.876 1.131 sum -0.143 -2.826 7.427 7.948 Atomic orbital electron populations 1.22386 1.00915 1.00480 0.98925 1.19393 0.89726 0.94624 0.86709 0.94474 1.21051 1.30462 1.12356 0.89633 0.92150 1.24936 0.95299 0.95157 0.98971 1.69899 1.37224 1.23098 1.23393 0.86586 0.79219 0.79590 0.82135 1.20404 1.21454 1.20267 1.64985 1.54121 1.02171 1.01724 1.23092 0.98017 0.93603 0.93942 1.22511 1.00973 0.96249 0.96699 1.22434 1.00435 0.95522 0.97859 1.22346 0.96799 0.95118 0.91393 0.93442 1.21698 0.98199 0.99070 0.99712 0.94652 0.97321 0.89922 0.93054 0.93517 0.90858 0.91629 0.92359 0.91896 0.92596 0.92652 0.92703 0.93811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.15 7.83 37.16 0.29 -3.86 16 2 C 0.20 5.23 2.28 -68.86 -0.16 5.07 16 3 H 0.04 1.06 8.10 -51.93 -0.42 0.64 16 4 C -0.50 -13.93 8.28 -34.44 -0.29 -14.22 16 5 H 0.06 1.71 7.66 -52.48 -0.40 1.30 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -25.99 11.41 55.43 0.63 -25.36 16 8 Si 0.90 21.75 29.54 -169.99 -5.02 16.72 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 N -0.51 -11.27 4.86 -216.05 -1.05 -12.32 16 13 C 0.04 0.83 5.78 -1.90 -0.01 0.82 16 14 C -0.13 -2.03 7.06 -24.87 -0.18 -2.20 16 15 C -0.12 -1.96 6.57 -25.38 -0.17 -2.12 16 16 C 0.05 0.99 2.81 -66.64 -0.19 0.81 16 17 H 0.05 0.95 6.01 -51.93 -0.31 0.64 16 18 C -0.13 -2.21 9.32 37.16 0.35 -1.86 16 19 H 0.03 0.86 6.41 -51.93 -0.33 0.52 16 20 H 0.01 0.18 6.25 -51.93 -0.32 -0.14 16 21 H 0.08 2.23 6.32 -51.93 -0.33 1.91 16 22 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 23 H 0.05 0.97 5.47 -51.92 -0.28 0.69 16 24 H 0.07 1.52 7.99 -51.93 -0.41 1.10 16 25 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.06 0.88 7.69 -51.93 -0.40 0.49 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 241.43 15.07 3.64 3.64 Total: -1.00 -28.63 241.43 -7.13 -35.76 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: -4.89 Total: -2.40 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: -0.44 Total: -16.06 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: -0.42 Total: -37.67 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -28.63 -7.13 -35.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252180151.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.679 kcal (2) G-P(sol) polarization free energy of solvation -28.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds