Wall clock time and date at job start Thu Apr 9 2020 14:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46557 * 2 1 4 4 C 1.50695 * 109.47003 * 239.99923 * 2 1 3 5 5 H 1.08004 * 120.00358 * 239.99878 * 4 2 1 6 6 C 1.37883 * 120.00080 * 59.99894 * 4 2 1 7 7 N 1.31513 * 119.99731 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00195 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47162 * 59.99980 * 8 6 4 10 10 H 1.48500 * 109.47027 * 180.02562 * 8 6 4 11 11 H 1.48509 * 109.46978 * 300.00072 * 8 6 4 12 12 N 1.46899 * 109.46891 * 120.00177 * 2 1 3 13 13 C 1.48526 * 111.00475 * 49.42460 * 12 2 1 14 14 C 1.54938 * 103.22730 * 200.27900 * 13 12 2 15 15 C 1.54588 * 102.92312 * 37.41122 * 14 13 12 16 16 C 1.47903 * 111.00132 * 292.02283 * 12 2 1 17 17 H 1.09002 * 110.08177 * 26.40514 * 16 12 2 18 18 C 1.52998 * 109.92064 * 265.20690 * 16 12 2 19 19 H 1.08999 * 109.46802 * 172.14903 * 1 2 3 20 20 H 1.09001 * 109.46730 * 292.14397 * 1 2 3 21 21 H 1.08993 * 109.47172 * 52.14878 * 1 2 3 22 22 H 0.97001 * 120.00013 * 180.02562 * 7 6 4 23 23 H 1.09008 * 110.66816 * 318.71381 * 13 12 2 24 24 H 1.09001 * 110.66820 * 81.67032 * 13 12 2 25 25 H 1.08997 * 110.72112 * 279.05293 * 14 13 12 26 26 H 1.09004 * 110.72621 * 155.77180 * 14 13 12 27 27 H 1.08998 * 110.31427 * 219.12496 * 15 14 13 28 28 H 1.09000 * 110.30855 * 96.95780 * 15 14 13 29 29 H 1.09007 * 109.46596 * 300.95209 * 18 16 12 30 30 H 1.08996 * 109.47596 * 60.95212 * 18 16 12 31 31 H 1.09002 * 109.47387 * 180.95896 * 18 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 1.8280 -2.5198 -4.0082 10 1 1.8278 -0.4192 -5.2204 11 1 3.8075 -1.1189 -4.0078 12 7 2.0197 -0.6925 1.1994 13 6 1.3468 -2.0059 1.3678 14 6 1.5630 -2.3252 2.8684 15 6 1.4242 -0.9398 3.5402 16 6 1.7082 0.0798 2.4217 17 1 0.8300 0.7039 2.2564 18 6 2.9039 0.9542 2.8047 19 1 -0.3633 -1.0180 -0.1404 20 1 -0.3633 0.3874 0.9519 21 1 -0.3633 0.6305 -0.8114 22 1 0.7089 1.1614 -3.4844 23 1 0.2837 -1.9254 1.1409 24 1 1.8167 -2.7623 0.7392 25 1 2.5583 -2.7369 3.0356 26 1 0.7957 -3.0088 3.2319 27 1 2.1537 -0.8337 4.3430 28 1 0.4136 -0.8062 3.9262 29 1 3.7761 0.3227 2.9744 30 1 3.1146 1.6555 1.9974 31 1 2.6729 1.5070 3.7153 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252180151.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:00:23 Heat of formation + Delta-G solvation = -20.360065 kcal Electronic energy + Delta-G solvation = -11758.496977 eV Core-core repulsion = 9845.802322 eV Total energy + Delta-G solvation = -1912.694655 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.17501 -35.70915 -33.08737 -32.06022 -29.06655 -27.33473 -26.31956 -23.41713 -21.52910 -20.20057 -18.20372 -17.25607 -16.24537 -15.86336 -15.21241 -14.94379 -14.50560 -13.71754 -13.45773 -13.31332 -13.11447 -12.79243 -12.56076 -12.40069 -12.18698 -12.13349 -11.81754 -11.66326 -11.42811 -11.22990 -10.87064 -10.50495 -8.89587 -8.11800 -6.22434 1.41085 1.43204 1.50885 2.42349 3.17244 3.47415 3.88633 3.99015 4.23886 4.42289 4.63052 4.67275 4.76555 4.83485 4.88336 4.96715 5.01132 5.07885 5.09789 5.22862 5.29754 5.39995 5.48734 5.52989 5.70618 5.82136 6.20213 6.48131 6.73113 6.91133 7.46982 8.94938 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.057593 B = 0.012349 C = 0.011699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.055231 B = 2266.881792 C = 2392.705649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.208 3.792 3 H 0.000 1.000 4 C -0.515 4.515 5 H 0.052 0.948 6 C 0.010 3.990 7 N -0.923 5.923 8 Si 0.960 3.040 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.273 1.273 12 N -0.521 5.521 13 C 0.036 3.964 14 C -0.115 4.115 15 C -0.116 4.116 16 C 0.043 3.957 17 H 0.032 0.968 18 C -0.124 4.124 19 H 0.033 0.967 20 H 0.027 0.973 21 H 0.055 0.945 22 H 0.261 0.739 23 H 0.036 0.964 24 H 0.058 0.942 25 H 0.073 0.927 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.028 0.972 31 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.221 -3.693 9.795 10.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.100 3.900 3 H 0.018 0.982 4 C -0.554 4.554 5 H 0.070 0.930 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.786 3.214 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.198 1.198 12 N -0.245 5.245 13 C -0.092 4.092 14 C -0.153 4.153 15 C -0.154 4.154 16 C -0.066 4.066 17 H 0.050 0.950 18 C -0.182 4.182 19 H 0.052 0.948 20 H 0.046 0.954 21 H 0.074 0.926 22 H 0.070 0.930 23 H 0.055 0.945 24 H 0.077 0.923 25 H 0.092 0.908 26 H 0.104 0.896 27 H 0.106 0.894 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.047 0.953 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.716 -3.625 9.587 10.275 hybrid contribution -0.722 0.101 -1.236 1.435 sum -0.006 -3.525 8.351 9.064 Atomic orbital electron populations 1.22159 1.00278 0.99753 0.98834 1.19112 0.90048 0.92771 0.88052 0.98213 1.21317 1.30672 1.12352 0.91030 0.92957 1.25730 0.95404 0.95837 1.01910 1.70031 1.37967 1.24200 1.24054 0.85576 0.78694 0.78687 0.78449 1.19583 1.20867 1.19845 1.64890 1.54542 1.03271 1.01795 1.23138 0.96894 0.92171 0.97017 1.22475 1.02453 0.97132 0.93209 1.22418 1.02233 0.93729 0.97012 1.22524 0.96914 0.95879 0.91251 0.95015 1.21672 0.97699 0.98596 1.00190 0.94787 0.95406 0.92622 0.92990 0.94536 0.92348 0.90812 0.89603 0.89398 0.90952 0.92201 0.95292 0.90549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.60 7.83 71.98 0.56 -7.04 16 2 C 0.21 11.02 2.28 44.17 0.10 11.12 16 3 H 0.00 0.00 8.10 -2.39 -0.02 -0.02 16 4 C -0.52 -29.50 8.28 25.60 0.21 -29.29 16 5 H 0.05 3.01 7.66 -2.91 -0.02 2.98 16 6 C 0.01 0.54 5.30 84.66 0.45 0.99 16 7 N -0.92 -54.53 11.41 21.45 0.24 -54.28 16 8 Si 0.96 44.85 29.54 68.60 2.03 46.87 16 9 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 12 N -0.52 -23.16 4.86 -837.45 -4.07 -27.23 16 13 C 0.04 1.40 5.78 86.65 0.50 1.90 16 14 C -0.11 -3.31 7.06 31.80 0.22 -3.09 16 15 C -0.12 -3.23 6.57 31.47 0.21 -3.02 16 16 C 0.04 1.57 2.81 45.06 0.13 1.70 16 17 H 0.03 1.25 6.01 -2.39 -0.01 1.24 16 18 C -0.12 -4.06 9.32 71.98 0.67 -3.39 16 19 H 0.03 1.67 6.41 -2.39 -0.02 1.65 16 20 H 0.03 1.24 6.25 -2.39 -0.01 1.23 16 21 H 0.05 3.09 6.32 -2.39 -0.02 3.07 16 22 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 23 H 0.04 1.49 5.47 -2.38 -0.01 1.48 16 24 H 0.06 2.41 7.99 -2.39 -0.02 2.39 16 25 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.09 2.05 7.69 -2.39 -0.02 2.03 16 28 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 30 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -61.95 241.43 2.34 -59.61 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: 1.08 Total: 5.15 kcal Atomic # 6 Polarization: -33.18 SS G_CDS: 3.05 Total: -30.12 kcal Atomic # 7 Polarization: -77.68 SS G_CDS: -3.83 Total: -81.51 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -61.95 2.34 -59.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252180151.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.254 kcal (2) G-P(sol) polarization free energy of solvation -61.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds