Wall clock time and date at job start Thu Apr 9 2020 13:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 110.06500 * 2 1 4 4 C 1.53997 * 109.91821 * 238.79233 * 2 1 3 5 5 C 1.54588 * 105.13912 * 241.87543 * 4 2 1 6 6 C 1.54937 * 102.92504 * 21.95642 * 5 4 2 7 7 H 1.09002 * 110.66828 * 81.01990 * 6 5 4 8 8 C 1.53003 * 110.81186 * 204.08622 * 6 5 4 9 9 C 1.50694 * 109.47003 * 182.59825 * 8 6 5 10 10 H 1.08000 * 120.00506 * 359.97438 * 9 8 6 11 11 C 1.37881 * 120.00030 * 180.02562 * 9 8 6 12 12 N 1.31518 * 119.99555 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00243 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.47191 * 89.99411 * 13 11 9 15 15 H 1.48496 * 109.47042 * 209.99602 * 13 11 9 16 16 H 1.48503 * 109.47116 * 329.99543 * 13 11 9 17 17 N 1.47904 * 109.91582 * 121.20513 * 2 1 3 18 18 H 1.09000 * 109.47056 * 300.25347 * 1 2 3 19 19 H 1.09002 * 109.47112 * 60.24942 * 1 2 3 20 20 H 1.08999 * 109.47399 * 180.24687 * 1 2 3 21 21 H 1.09003 * 109.46841 * 179.75349 * 3 2 1 22 22 H 1.09005 * 109.47226 * 299.74506 * 3 2 1 23 23 H 1.08993 * 109.47323 * 59.75357 * 3 2 1 24 24 H 1.09004 * 110.30413 * 0.79201 * 4 2 1 25 25 H 1.09000 * 110.30687 * 122.85812 * 4 2 1 26 26 H 1.08997 * 110.72442 * 263.59662 * 5 4 2 27 27 H 1.09004 * 110.72634 * 140.31497 * 5 4 2 28 28 H 1.08999 * 109.46464 * 302.59558 * 8 6 5 29 29 H 1.08996 * 109.47064 * 62.59447 * 8 6 5 30 30 H 0.97002 * 119.99483 * 179.97438 * 12 11 9 31 31 H 1.00896 * 110.99706 * 214.53602 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0549 1.4371 0.0000 4 6 2.0546 -0.7502 -1.2383 5 6 2.8535 -1.9483 -0.6761 6 6 2.2660 -2.1193 0.7473 7 1 1.3274 -2.6725 0.7122 8 6 3.2681 -2.8176 1.6688 9 6 2.6436 -3.0254 3.0244 10 1 1.6332 -2.6924 3.2104 11 6 3.3626 -3.6398 4.0278 12 7 4.5932 -4.0448 3.8015 13 14 2.5888 -3.8967 5.7084 14 1 1.8974 -5.2105 5.7394 15 1 3.6470 -3.8696 6.7499 16 1 1.6069 -2.8143 5.9720 17 7 2.0338 -0.7205 1.1894 18 1 -0.3633 0.5178 0.8877 19 1 -0.3633 0.5100 -0.8922 20 1 -0.3634 -1.0276 0.0044 21 1 3.1449 1.4258 0.0044 22 1 1.7006 1.9534 -0.8923 23 1 1.6934 1.9560 0.8877 24 1 1.2224 -1.1028 -1.8477 25 1 2.7050 -0.1021 -1.8258 26 1 3.9171 -1.7146 -0.6289 27 1 2.6803 -2.8425 -1.2749 28 1 3.5416 -3.7829 1.2429 29 1 4.1600 -2.1994 1.7705 30 1 5.0991 -4.4767 4.5075 31 1 2.8865 -0.3029 1.5307 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259538853.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:16 Heat of formation + Delta-G solvation = -21.747903 kcal Electronic energy + Delta-G solvation = -11449.137738 eV Core-core repulsion = 9536.382902 eV Total energy + Delta-G solvation = -1912.754836 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.81073 -33.56749 -31.82804 -29.52174 -27.82233 -27.05396 -24.45039 -21.93059 -19.59566 -18.76462 -16.21208 -15.11544 -14.66680 -14.19063 -13.78809 -13.53225 -12.80154 -12.44604 -12.08831 -11.73136 -11.64566 -11.32262 -11.06820 -10.81488 -10.67230 -10.39904 -10.30349 -10.19153 -9.88568 -9.19705 -8.97540 -8.29508 -7.75042 -5.91378 -3.90803 3.38750 3.44639 3.50397 4.54641 4.77705 5.09651 5.22567 5.43608 5.49943 5.63483 5.68449 5.81832 5.93386 6.10072 6.15817 6.19561 6.25846 6.33234 6.45135 6.51343 6.67566 6.86185 6.93592 7.49713 7.71202 7.91153 8.07730 8.25029 8.53326 9.16344 9.72181 11.20298 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.057418 B = 0.010532 C = 0.009726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.539149 B = 2658.020460 C = 2878.136283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.086 3.914 3 C -0.146 4.146 4 C -0.142 4.142 5 C -0.156 4.156 6 C 0.085 3.915 7 H 0.073 0.927 8 C 0.025 3.975 9 C -0.500 4.500 10 H 0.061 0.939 11 C 0.051 3.949 12 N -0.902 5.902 13 Si 0.892 3.108 14 H -0.283 1.283 15 H -0.289 1.289 16 H -0.273 1.273 17 N -0.649 5.649 18 H 0.056 0.944 19 H 0.045 0.955 20 H 0.054 0.946 21 H 0.052 0.948 22 H 0.054 0.946 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.021 0.979 29 H 0.015 0.985 30 H 0.258 0.742 31 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.653 7.341 -8.098 11.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.005 4.005 3 C -0.204 4.204 4 C -0.181 4.181 5 C -0.196 4.196 6 C -0.025 4.025 7 H 0.091 0.909 8 C -0.013 4.013 9 C -0.539 4.539 10 H 0.080 0.920 11 C -0.148 4.148 12 N -0.542 5.542 13 Si 0.720 3.280 14 H -0.209 1.209 15 H -0.215 1.215 16 H -0.198 1.198 17 N -0.278 5.278 18 H 0.075 0.925 19 H 0.064 0.936 20 H 0.073 0.927 21 H 0.071 0.929 22 H 0.073 0.927 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.039 0.961 29 H 0.033 0.967 30 H 0.068 0.932 31 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.160 7.166 -7.652 11.684 hybrid contribution 0.546 -0.154 0.328 0.656 sum -4.614 7.012 -7.324 11.139 Atomic orbital electron populations 1.21707 0.94329 1.01662 1.00464 1.21733 0.95674 0.93157 0.89983 1.22043 1.00605 0.96112 1.01664 1.22905 0.99553 0.97629 0.98057 1.23228 0.99628 0.97285 0.99442 1.22844 0.99224 0.89480 0.90914 0.90859 1.19214 0.93080 0.95216 0.93743 1.21217 1.00186 1.36700 0.95781 0.92031 1.25036 0.94920 0.96033 0.98856 1.69972 1.09760 1.41277 1.33236 0.86590 0.78874 0.78434 0.84081 1.20915 1.21504 1.19816 1.62788 1.34937 1.02624 1.27501 0.92500 0.93590 0.92699 0.92884 0.92728 0.92155 0.92022 0.92378 0.92001 0.91908 0.96081 0.96672 0.93240 0.84637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.81 8.62 37.16 0.32 -1.49 16 2 C 0.09 1.35 1.16 -130.53 -0.15 1.20 16 3 C -0.15 -1.96 8.26 37.16 0.31 -1.65 16 4 C -0.14 -2.14 6.21 -25.38 -0.16 -2.30 16 5 C -0.16 -2.75 6.50 -24.87 -0.16 -2.92 16 6 C 0.08 1.78 3.17 -65.79 -0.21 1.57 16 7 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 8 C 0.02 0.64 4.54 -27.88 -0.13 0.51 16 9 C -0.50 -14.27 8.97 -34.44 -0.31 -14.58 16 10 H 0.06 1.76 7.74 -52.49 -0.41 1.36 16 11 C 0.05 1.49 5.46 -17.82 -0.10 1.40 16 12 N -0.90 -27.40 13.29 55.43 0.74 -26.67 16 13 Si 0.89 22.25 29.54 -169.99 -5.02 17.23 16 14 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 15 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 16 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 17 N -0.65 -12.70 6.69 -89.69 -0.60 -13.30 16 18 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 19 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 20 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 21 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.06 0.87 7.69 -51.93 -0.40 0.47 16 25 H 0.06 0.79 7.69 -51.93 -0.40 0.39 16 26 H 0.06 1.11 8.06 -51.93 -0.42 0.69 16 27 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.01 0.41 8.03 -51.93 -0.42 -0.01 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.34 6.72 8.02 -39.29 -0.32 6.41 16 LS Contribution 252.50 15.07 3.81 3.81 Total: -1.00 -29.65 252.50 -6.96 -36.61 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -5.29 Total: 0.58 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: -0.58 Total: -18.25 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.14 Total: -39.97 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -29.65 -6.96 -36.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259538853.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.861 kcal (2) G-P(sol) polarization free energy of solvation -29.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds