Wall clock time and date at job start Thu Apr 9 2020 13:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 110.06500 * 2 1 4 4 C 1.53997 * 109.91821 * 238.79233 * 2 1 3 5 5 C 1.54588 * 105.13912 * 241.87543 * 4 2 1 6 6 C 1.54937 * 102.92504 * 21.95642 * 5 4 2 7 7 H 1.09002 * 110.66828 * 81.01990 * 6 5 4 8 8 C 1.53003 * 110.81186 * 204.08622 * 6 5 4 9 9 C 1.50694 * 109.47003 * 182.59825 * 8 6 5 10 10 H 1.08000 * 120.00506 * 359.97438 * 9 8 6 11 11 C 1.37881 * 120.00030 * 180.02562 * 9 8 6 12 12 N 1.31518 * 119.99555 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00243 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.47191 * 89.99411 * 13 11 9 15 15 H 1.48496 * 109.47042 * 209.99602 * 13 11 9 16 16 H 1.48503 * 109.47116 * 329.99543 * 13 11 9 17 17 N 1.47904 * 109.91582 * 121.20513 * 2 1 3 18 18 H 1.09000 * 109.47056 * 300.25347 * 1 2 3 19 19 H 1.09002 * 109.47112 * 60.24942 * 1 2 3 20 20 H 1.08999 * 109.47399 * 180.24687 * 1 2 3 21 21 H 1.09003 * 109.46841 * 179.75349 * 3 2 1 22 22 H 1.09005 * 109.47226 * 299.74506 * 3 2 1 23 23 H 1.08993 * 109.47323 * 59.75357 * 3 2 1 24 24 H 1.09004 * 110.30413 * 0.79201 * 4 2 1 25 25 H 1.09000 * 110.30687 * 122.85812 * 4 2 1 26 26 H 1.08997 * 110.72442 * 263.59662 * 5 4 2 27 27 H 1.09004 * 110.72634 * 140.31497 * 5 4 2 28 28 H 1.08999 * 109.46464 * 302.59558 * 8 6 5 29 29 H 1.08996 * 109.47064 * 62.59447 * 8 6 5 30 30 H 0.97002 * 119.99483 * 179.97438 * 12 11 9 31 31 H 1.00896 * 110.99706 * 214.53602 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0549 1.4371 0.0000 4 6 2.0546 -0.7502 -1.2383 5 6 2.8535 -1.9483 -0.6761 6 6 2.2660 -2.1193 0.7473 7 1 1.3274 -2.6725 0.7122 8 6 3.2681 -2.8176 1.6688 9 6 2.6436 -3.0254 3.0244 10 1 1.6332 -2.6924 3.2104 11 6 3.3626 -3.6398 4.0278 12 7 4.5932 -4.0448 3.8015 13 14 2.5888 -3.8967 5.7084 14 1 1.8974 -5.2105 5.7394 15 1 3.6470 -3.8696 6.7499 16 1 1.6069 -2.8143 5.9720 17 7 2.0338 -0.7205 1.1894 18 1 -0.3633 0.5178 0.8877 19 1 -0.3633 0.5100 -0.8922 20 1 -0.3634 -1.0276 0.0044 21 1 3.1449 1.4258 0.0044 22 1 1.7006 1.9534 -0.8923 23 1 1.6934 1.9560 0.8877 24 1 1.2224 -1.1028 -1.8477 25 1 2.7050 -0.1021 -1.8258 26 1 3.9171 -1.7146 -0.6289 27 1 2.6803 -2.8425 -1.2749 28 1 3.5416 -3.7829 1.2429 29 1 4.1600 -2.1994 1.7705 30 1 5.0991 -4.4767 4.5075 31 1 2.8865 -0.3029 1.5307 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259538853.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:16 Heat of formation + Delta-G solvation = -41.114688 kcal Electronic energy + Delta-G solvation = -11449.977545 eV Core-core repulsion = 9536.382902 eV Total energy + Delta-G solvation = -1913.594643 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.21804 -35.50220 -33.60443 -30.97801 -29.64614 -28.16549 -26.24673 -23.65518 -21.27926 -20.04024 -18.40107 -16.78870 -16.33409 -15.81953 -15.11969 -14.88192 -14.38973 -14.01322 -13.69048 -13.29446 -13.14511 -12.81209 -12.76210 -12.46548 -12.29725 -12.16366 -11.83319 -11.43788 -11.36360 -11.25390 -10.93414 -10.53952 -9.25973 -8.15366 -6.22628 1.40643 1.41617 1.53708 2.44474 3.16696 3.40176 3.87760 3.95940 4.15548 4.35852 4.44549 4.56281 4.70263 4.87013 4.90304 4.97138 5.03377 5.04777 5.11110 5.18035 5.24726 5.40120 5.46606 5.54366 5.68754 5.85150 6.22394 6.38334 6.67985 6.91774 7.44882 8.96376 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.057418 B = 0.010532 C = 0.009726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.539149 B = 2658.020460 C = 2878.136283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.079 3.921 3 C -0.141 4.141 4 C -0.133 4.133 5 C -0.152 4.152 6 C 0.090 3.910 7 H 0.062 0.938 8 C 0.032 3.968 9 C -0.515 4.515 10 H 0.056 0.944 11 C -0.004 4.004 12 N -0.937 5.937 13 Si 0.961 3.039 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.267 1.267 17 N -0.665 5.665 18 H 0.050 0.950 19 H 0.076 0.924 20 H 0.039 0.961 21 H 0.050 0.950 22 H 0.081 0.919 23 H 0.057 0.943 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.054 0.946 27 H 0.070 0.930 28 H -0.005 1.005 29 H -0.007 1.007 30 H 0.261 0.739 31 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.751 8.426 -8.682 13.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.012 4.012 3 C -0.199 4.199 4 C -0.171 4.171 5 C -0.192 4.192 6 C -0.020 4.020 7 H 0.080 0.920 8 C -0.005 4.005 9 C -0.553 4.553 10 H 0.075 0.925 11 C -0.200 4.200 12 N -0.578 5.578 13 Si 0.787 3.213 14 H -0.200 1.200 15 H -0.209 1.209 16 H -0.192 1.192 17 N -0.294 5.294 18 H 0.069 0.931 19 H 0.094 0.906 20 H 0.059 0.941 21 H 0.069 0.931 22 H 0.100 0.900 23 H 0.076 0.924 24 H 0.095 0.905 25 H 0.097 0.903 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.013 0.987 29 H 0.011 0.989 30 H 0.070 0.930 31 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.273 8.258 -8.251 13.252 hybrid contribution 0.895 -0.490 0.491 1.132 sum -5.378 7.769 -7.760 12.226 Atomic orbital electron populations 1.21704 0.93387 1.01100 1.01720 1.21934 0.96374 0.94225 0.88630 1.22002 1.00478 0.94513 1.02900 1.22862 0.99935 0.96457 0.97896 1.23142 0.99482 0.99171 0.97365 1.22534 0.97315 0.90092 0.92027 0.92002 1.19053 0.93434 0.94025 0.93986 1.21516 1.00039 1.36574 0.97159 0.92536 1.25917 0.95400 0.95726 1.02987 1.70095 1.11125 1.42023 1.34586 0.85496 0.78081 0.78635 0.79103 1.20011 1.20904 1.19184 1.62763 1.34590 1.02063 1.30002 0.93069 0.90552 0.94143 0.93055 0.90039 0.92389 0.90452 0.90266 0.92676 0.91102 0.98697 0.98907 0.93042 0.85351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.25 8.62 71.98 0.62 -2.63 16 2 C 0.08 2.32 1.16 3.67 0.00 2.33 16 3 C -0.14 -3.38 8.26 71.98 0.59 -2.79 16 4 C -0.13 -3.61 6.21 31.47 0.20 -3.41 16 5 C -0.15 -5.22 6.50 31.80 0.21 -5.01 16 6 C 0.09 3.82 3.17 45.26 0.14 3.97 16 7 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 8 C 0.03 1.73 4.54 29.85 0.14 1.86 16 9 C -0.51 -29.95 8.97 25.60 0.23 -29.72 16 10 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 11 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 12 N -0.94 -57.93 13.29 21.45 0.28 -57.65 16 13 Si 0.96 45.92 29.54 68.60 2.03 47.94 16 14 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 15 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 16 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 17 N -0.67 -25.81 6.69 -437.68 -2.93 -28.74 16 18 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 19 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 20 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 21 H 0.05 1.24 8.12 -2.39 -0.02 1.22 16 22 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 23 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.08 1.89 7.69 -2.38 -0.02 1.87 16 25 H 0.08 1.86 7.69 -2.39 -0.02 1.84 16 26 H 0.05 1.95 8.06 -2.39 -0.02 1.93 16 27 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 28 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 29 H -0.01 -0.42 8.03 -2.39 -0.02 -0.44 16 30 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 31 H 0.33 13.28 8.02 -89.70 -0.72 12.56 16 Total: -1.00 -63.73 252.50 2.33 -61.40 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 0.36 Total: 12.20 kcal Atomic # 6 Polarization: -37.75 SS G_CDS: 2.59 Total: -35.16 kcal Atomic # 7 Polarization: -83.74 SS G_CDS: -2.64 Total: -86.39 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.94 kcal Total: -63.73 2.33 -61.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259538853.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.282 kcal (2) G-P(sol) polarization free energy of solvation -63.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds