Wall clock time and date at job start Thu Apr 9 2020 13:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.46009 * 2 1 4 4 C 1.53041 * 109.46406 * 119.96341 * 2 1 3 5 5 C 1.53120 * 109.27477 * 60.83819 * 4 2 1 6 6 C 1.53120 * 109.16047 * 57.65434 * 5 4 2 7 7 H 1.09007 * 109.50351 * 62.28419 * 6 5 4 8 8 C 1.50704 * 109.50228 * 182.40169 * 6 5 4 9 9 H 1.07999 * 119.99864 * 359.97438 * 8 6 5 10 10 C 1.37878 * 119.99704 * 180.02562 * 8 6 5 11 11 N 1.31510 * 120.00104 * 359.97438 * 10 8 6 12 12 Si 1.86801 * 120.00016 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47288 * 59.99318 * 12 10 8 14 14 H 1.48500 * 109.47317 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.46930 * 299.99885 * 12 10 8 16 16 C 1.53037 * 109.28145 * 302.34544 * 6 5 4 17 17 N 1.46843 * 109.46582 * 240.01943 * 2 1 3 18 18 C 1.46906 * 110.99773 * 65.82164 * 17 2 1 19 19 H 1.09002 * 109.46738 * 179.97438 * 1 2 3 20 20 H 1.08998 * 109.47078 * 299.97558 * 1 2 3 21 21 H 1.09000 * 109.46940 * 59.98408 * 1 2 3 22 22 H 1.08999 * 109.50081 * 180.77777 * 4 2 1 23 23 H 1.08996 * 109.50623 * 300.86184 * 4 2 1 24 24 H 1.09002 * 109.52128 * 177.55693 * 5 4 2 25 25 H 1.09003 * 109.52624 * 297.74816 * 5 4 2 26 26 H 0.97002 * 120.00005 * 180.02562 * 11 10 8 27 27 H 1.09003 * 109.45723 * 299.16420 * 16 6 5 28 28 H 1.08991 * 109.46251 * 179.19402 * 16 6 5 29 29 H 1.08992 * 109.47459 * 59.99962 * 18 17 2 30 30 H 1.09004 * 109.47040 * 180.02562 * 18 17 2 31 31 H 1.09000 * 109.47033 * 300.00065 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7207 1.2501 5 6 1.5444 -2.1694 1.2359 6 6 2.0270 -2.8531 -0.0464 7 1 3.1168 -2.8749 -0.0591 8 6 1.4941 -4.2619 -0.0965 9 1 0.8736 -4.6334 0.7056 10 6 1.7997 -5.0768 -1.1659 11 7 2.5556 -4.6245 -2.1424 12 14 1.1386 -6.8228 -1.2286 13 1 -0.3460 -6.7908 -1.2144 14 1 1.6072 -7.4852 -2.4723 15 1 1.6286 -7.5802 -0.0489 16 6 1.5175 -2.0706 -1.2588 17 7 2.0194 -0.6918 -1.1992 18 6 1.6652 0.0504 -2.4165 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5134 0.8902 21 1 -0.3633 0.5141 -0.8898 22 1 3.1299 -0.7090 1.2577 23 1 1.6644 -0.2157 2.1400 24 1 1.9411 -2.6986 2.1023 25 1 0.4549 -2.1820 1.2675 26 1 2.7703 -5.1977 -2.8949 27 1 0.4276 -2.0610 -1.2529 28 1 1.8714 -2.5467 -2.1732 29 1 2.1121 1.0438 -2.3794 30 1 2.0391 -0.4842 -3.2898 31 1 0.5811 0.1419 -2.4837 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259624195.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:27 Heat of formation + Delta-G solvation = -9.583211 kcal Electronic energy + Delta-G solvation = -11874.301323 eV Core-core repulsion = 9962.073987 eV Total energy + Delta-G solvation = -1912.227336 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.63292 -33.57831 -32.22116 -30.26868 -27.08418 -25.68948 -24.34722 -21.79942 -20.71401 -17.52685 -16.29620 -15.15781 -14.57602 -14.40650 -13.70580 -13.31269 -12.51472 -12.25357 -12.16236 -11.64590 -11.54031 -11.35511 -10.94921 -10.82938 -10.65244 -10.20026 -10.10299 -9.88770 -9.42082 -8.91849 -8.70555 -8.30705 -7.29902 -5.95244 -4.01850 3.33511 3.38334 3.40862 4.45512 4.86852 5.36463 5.49151 5.61502 5.80485 5.95164 6.00792 6.08940 6.18994 6.27212 6.40216 6.47640 6.56890 6.68029 6.80345 6.92709 7.05941 7.18638 7.22966 7.74308 7.90537 8.03530 8.15973 8.25930 8.56484 9.03441 9.62740 11.10447 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.054639 B = 0.013460 C = 0.012036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.327438 B = 2079.798859 C = 2325.725568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.084 3.916 3 H 0.062 0.938 4 C -0.109 4.109 5 C -0.112 4.112 6 C 0.054 3.946 7 H 0.033 0.967 8 C -0.515 4.515 9 H 0.054 0.946 10 C 0.062 3.938 11 N -0.888 5.888 12 Si 0.890 3.110 13 H -0.278 1.278 14 H -0.288 1.288 15 H -0.277 1.277 16 C 0.061 3.939 17 N -0.540 5.540 18 C 0.028 3.972 19 H 0.070 0.930 20 H 0.049 0.951 21 H 0.046 0.954 22 H 0.061 0.939 23 H 0.047 0.953 24 H 0.046 0.954 25 H 0.046 0.954 26 H 0.260 0.740 27 H 0.010 0.990 28 H 0.102 0.898 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.601 7.121 2.045 7.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.025 4.025 3 H 0.081 0.919 4 C -0.147 4.147 5 C -0.150 4.150 6 C 0.035 3.965 7 H 0.051 0.949 8 C -0.554 4.554 9 H 0.073 0.927 10 C -0.140 4.140 11 N -0.527 5.527 12 Si 0.718 3.282 13 H -0.204 1.204 14 H -0.213 1.213 15 H -0.203 1.203 16 C -0.065 4.065 17 N -0.264 5.264 18 C -0.121 4.121 19 H 0.089 0.911 20 H 0.068 0.932 21 H 0.065 0.935 22 H 0.080 0.920 23 H 0.066 0.934 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.028 0.972 28 H 0.120 0.880 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -2.000 7.034 1.886 7.552 hybrid contribution -1.311 -0.901 -0.213 1.605 sum -3.311 6.133 1.673 7.168 Atomic orbital electron populations 1.22501 0.98710 1.02859 1.00532 1.21565 0.92078 0.96838 0.92058 0.91936 1.21601 1.00778 0.97210 0.95138 1.21711 0.99421 0.93525 1.00344 1.18662 0.96935 0.92434 0.88464 0.94905 1.21187 1.31499 0.97031 1.05688 0.92749 1.24996 0.94987 0.98190 0.95782 1.69875 1.36983 1.36167 1.09661 0.86702 0.79248 0.84994 0.77298 1.20399 1.21320 1.20279 1.22448 0.95280 0.84252 1.04535 1.62300 1.59537 1.04091 1.00444 1.22282 0.97699 0.98001 0.94114 0.91109 0.93193 0.93496 0.91982 0.93383 0.93551 0.93507 0.92960 0.97161 0.88044 0.92979 0.91862 0.96550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.18 8.18 37.16 0.30 -2.88 16 2 C 0.08 1.53 2.93 -67.72 -0.20 1.33 16 3 H 0.06 1.04 8.12 -51.93 -0.42 0.62 16 4 C -0.11 -2.03 5.61 -26.65 -0.15 -2.18 16 5 C -0.11 -2.42 4.92 -26.61 -0.13 -2.56 16 6 C 0.05 1.38 2.26 -91.69 -0.21 1.17 16 7 H 0.03 0.94 8.14 -51.92 -0.42 0.51 16 8 C -0.52 -14.33 8.56 -34.44 -0.29 -14.63 16 9 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 10 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 11 N -0.89 -25.61 11.34 55.43 0.63 -24.98 16 12 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 16 C 0.06 1.50 4.22 -3.83 -0.02 1.48 16 17 N -0.54 -11.34 4.86 -234.92 -1.14 -12.48 16 18 C 0.03 0.50 9.32 60.07 0.56 1.06 16 19 H 0.07 1.36 4.80 -51.93 -0.25 1.11 16 20 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 21 H 0.05 0.75 6.54 -51.93 -0.34 0.41 16 22 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 23 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 25 H 0.05 1.00 6.56 -51.93 -0.34 0.66 16 26 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 27 H 0.01 0.25 6.19 -51.93 -0.32 -0.07 16 28 H 0.10 2.78 6.06 -51.93 -0.31 2.46 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 1.15 8.09 -51.93 -0.42 0.73 16 31 H 0.02 0.28 6.46 -51.93 -0.34 -0.06 16 LS Contribution 236.09 15.07 3.56 3.56 Total: -1.00 -28.30 236.09 -7.02 -35.33 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: -4.82 Total: -2.22 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: -0.23 Total: -15.57 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: -0.51 Total: -37.47 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -28.30 -7.02 -35.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259624195.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.743 kcal (2) G-P(sol) polarization free energy of solvation -28.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds