Wall clock time and date at job start Thu Apr 9 2020 13:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.46009 * 2 1 4 4 C 1.53041 * 109.46406 * 119.96341 * 2 1 3 5 5 C 1.53120 * 109.27477 * 60.83819 * 4 2 1 6 6 C 1.53120 * 109.16047 * 57.65434 * 5 4 2 7 7 H 1.09007 * 109.50351 * 62.28419 * 6 5 4 8 8 C 1.50704 * 109.50228 * 182.40169 * 6 5 4 9 9 H 1.07999 * 119.99864 * 359.97438 * 8 6 5 10 10 C 1.37878 * 119.99704 * 180.02562 * 8 6 5 11 11 N 1.31510 * 120.00104 * 359.97438 * 10 8 6 12 12 Si 1.86801 * 120.00016 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47288 * 59.99318 * 12 10 8 14 14 H 1.48500 * 109.47317 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.46930 * 299.99885 * 12 10 8 16 16 C 1.53037 * 109.28145 * 302.34544 * 6 5 4 17 17 N 1.46843 * 109.46582 * 240.01943 * 2 1 3 18 18 C 1.46906 * 110.99773 * 65.82164 * 17 2 1 19 19 H 1.09002 * 109.46738 * 179.97438 * 1 2 3 20 20 H 1.08998 * 109.47078 * 299.97558 * 1 2 3 21 21 H 1.09000 * 109.46940 * 59.98408 * 1 2 3 22 22 H 1.08999 * 109.50081 * 180.77777 * 4 2 1 23 23 H 1.08996 * 109.50623 * 300.86184 * 4 2 1 24 24 H 1.09002 * 109.52128 * 177.55693 * 5 4 2 25 25 H 1.09003 * 109.52624 * 297.74816 * 5 4 2 26 26 H 0.97002 * 120.00005 * 180.02562 * 11 10 8 27 27 H 1.09003 * 109.45723 * 299.16420 * 16 6 5 28 28 H 1.08991 * 109.46251 * 179.19402 * 16 6 5 29 29 H 1.08992 * 109.47459 * 59.99962 * 18 17 2 30 30 H 1.09004 * 109.47040 * 180.02562 * 18 17 2 31 31 H 1.09000 * 109.47033 * 300.00065 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7207 1.2501 5 6 1.5444 -2.1694 1.2359 6 6 2.0270 -2.8531 -0.0464 7 1 3.1168 -2.8749 -0.0591 8 6 1.4941 -4.2619 -0.0965 9 1 0.8736 -4.6334 0.7056 10 6 1.7997 -5.0768 -1.1659 11 7 2.5556 -4.6245 -2.1424 12 14 1.1386 -6.8228 -1.2286 13 1 -0.3460 -6.7908 -1.2144 14 1 1.6072 -7.4852 -2.4723 15 1 1.6286 -7.5802 -0.0489 16 6 1.5175 -2.0706 -1.2588 17 7 2.0194 -0.6918 -1.1992 18 6 1.6652 0.0504 -2.4165 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5134 0.8902 21 1 -0.3633 0.5141 -0.8898 22 1 3.1299 -0.7090 1.2577 23 1 1.6644 -0.2157 2.1400 24 1 1.9411 -2.6986 2.1023 25 1 0.4549 -2.1820 1.2675 26 1 2.7703 -5.1977 -2.8949 27 1 0.4276 -2.0610 -1.2529 28 1 1.8714 -2.5467 -2.1732 29 1 2.1121 1.0438 -2.3794 30 1 2.0391 -0.4842 -3.2898 31 1 0.5811 0.1419 -2.4837 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259624195.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:27 Heat of formation + Delta-G solvation = -27.826466 kcal Electronic energy + Delta-G solvation = -11875.092409 eV Core-core repulsion = 9962.073987 eV Total energy + Delta-G solvation = -1913.018423 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.27542 -35.53234 -33.93097 -32.09208 -28.67013 -27.41984 -26.15064 -23.50081 -22.51075 -19.20242 -18.40164 -16.87261 -16.42403 -16.00202 -15.36207 -14.91293 -14.29741 -14.12376 -13.73734 -13.28139 -13.03343 -12.90899 -12.80465 -12.51418 -12.46995 -12.02557 -11.80608 -11.59286 -11.24019 -10.78924 -10.61376 -10.41411 -8.93544 -8.08034 -6.23205 1.41274 1.42564 1.50439 2.43178 3.13127 3.38894 4.05010 4.15881 4.32320 4.49624 4.54205 4.63024 4.73431 4.79987 4.88689 5.00000 5.02882 5.10374 5.14888 5.23203 5.34602 5.39314 5.51837 5.62974 5.97430 6.07752 6.25193 6.54164 6.58855 6.90885 7.45304 8.96150 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.054639 B = 0.013460 C = 0.012036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.327438 B = 2079.798859 C = 2325.725568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.079 3.921 3 H 0.092 0.908 4 C -0.105 4.105 5 C -0.107 4.107 6 C 0.050 3.950 7 H -0.008 1.008 8 C -0.539 4.539 9 H 0.053 0.947 10 C 0.013 3.987 11 N -0.915 5.915 12 Si 0.954 3.046 13 H -0.271 1.271 14 H -0.284 1.284 15 H -0.271 1.271 16 C 0.081 3.919 17 N -0.558 5.558 18 C 0.029 3.971 19 H 0.042 0.958 20 H 0.077 0.923 21 H 0.055 0.945 22 H 0.053 0.947 23 H 0.084 0.916 24 H 0.044 0.956 25 H 0.049 0.951 26 H 0.261 0.739 27 H 0.002 0.998 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.050 0.950 31 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.473 8.199 2.762 9.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.029 4.029 3 H 0.110 0.890 4 C -0.143 4.143 5 C -0.144 4.144 6 C 0.031 3.969 7 H 0.010 0.990 8 C -0.577 4.577 9 H 0.071 0.929 10 C -0.186 4.186 11 N -0.555 5.555 12 Si 0.780 3.220 13 H -0.196 1.196 14 H -0.209 1.209 15 H -0.196 1.196 16 C -0.047 4.047 17 N -0.282 5.282 18 C -0.119 4.119 19 H 0.061 0.939 20 H 0.096 0.904 21 H 0.074 0.926 22 H 0.072 0.928 23 H 0.102 0.898 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.020 0.980 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -2.876 8.128 2.613 9.009 hybrid contribution -1.008 -1.195 -0.431 1.622 sum -3.884 6.933 2.182 8.241 Atomic orbital electron populations 1.22409 0.97468 1.01564 1.02411 1.21737 0.93120 0.97687 0.90384 0.89042 1.21594 1.00354 0.95277 0.97073 1.21595 0.99450 0.95469 0.97909 1.18614 0.94300 0.92615 0.91377 0.99019 1.21565 1.31726 0.98599 1.05826 0.92919 1.25787 0.95188 1.02227 0.95380 1.70032 1.37883 1.37471 1.10072 0.85677 0.78840 0.80091 0.77441 1.19616 1.20900 1.19618 1.21968 0.94317 0.86336 1.02049 1.62202 1.60193 1.03000 1.02817 1.22322 0.98479 0.98767 0.92366 0.93889 0.90410 0.92561 0.92793 0.89756 0.93714 0.93249 0.93014 0.98012 0.91705 0.89970 0.93114 0.95666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.58 8.18 71.98 0.59 -4.99 16 2 C 0.08 2.67 2.93 44.94 0.13 2.80 16 3 H 0.09 2.63 8.12 -2.38 -0.02 2.61 16 4 C -0.11 -3.67 5.61 30.65 0.17 -3.50 16 5 C -0.11 -4.55 4.92 30.67 0.15 -4.40 16 6 C 0.05 2.62 2.26 -11.49 -0.03 2.59 16 7 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 8 C -0.54 -30.60 8.56 25.60 0.22 -30.38 16 9 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 10 C 0.01 0.74 5.30 84.66 0.45 1.19 16 11 N -0.92 -54.27 11.34 21.45 0.24 -54.03 16 12 Si 0.95 44.28 29.54 68.60 2.03 46.31 16 13 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 14 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 15 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 16 C 0.08 4.02 4.22 86.33 0.36 4.39 16 17 N -0.56 -22.97 4.86 -897.16 -4.36 -27.32 16 18 C 0.03 0.99 9.32 127.69 1.19 2.18 16 19 H 0.04 1.57 4.80 -2.39 -0.01 1.56 16 20 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 21 H 0.06 1.62 6.54 -2.39 -0.02 1.61 16 22 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 23 H 0.08 2.35 8.14 -2.39 -0.02 2.34 16 24 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.05 2.06 6.56 -2.39 -0.02 2.05 16 26 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 27 H 0.00 0.09 6.19 -2.39 -0.01 0.07 16 28 H 0.06 3.69 6.06 -2.39 -0.01 3.67 16 29 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.05 1.83 8.09 -2.38 -0.02 1.81 16 31 H 0.02 0.81 6.46 -2.39 -0.02 0.80 16 Total: -1.00 -61.70 236.09 2.24 -59.46 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: 1.09 Total: 5.69 kcal Atomic # 6 Polarization: -33.35 SS G_CDS: 3.24 Total: -30.11 kcal Atomic # 7 Polarization: -77.24 SS G_CDS: -4.12 Total: -81.35 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -61.70 2.24 -59.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259624195.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.634 kcal (2) G-P(sol) polarization free energy of solvation -61.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds