Wall clock time and date at job start Thu Apr 9 2020 13:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47048 * 2 1 4 4 N 1.46897 * 109.47345 * 120.00157 * 2 1 3 5 5 C 1.46897 * 110.99919 * 154.99745 * 4 2 1 6 6 H 1.09005 * 109.47319 * 35.00143 * 5 4 2 7 7 C 1.50706 * 109.47175 * 154.99804 * 5 4 2 8 8 H 1.08002 * 119.99589 * 35.42763 * 7 5 4 9 9 C 1.37872 * 120.00155 * 215.42589 * 7 5 4 10 10 N 1.31518 * 119.99820 * 355.39019 * 9 7 5 11 11 Si 1.86798 * 120.00030 * 175.12147 * 9 7 5 12 12 H 1.48502 * 109.47414 * 59.99587 * 11 9 7 13 13 H 1.48507 * 109.47210 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.46864 * 299.99735 * 11 9 7 15 15 C 1.52998 * 109.47329 * 275.00043 * 5 4 2 16 16 C 1.53003 * 117.49909 * 243.74258 * 15 5 4 17 17 C 1.53001 * 117.49955 * 175.08163 * 15 5 4 18 18 H 1.09004 * 109.46975 * 299.99771 * 1 2 3 19 19 H 1.08990 * 109.47512 * 60.00094 * 1 2 3 20 20 H 1.09007 * 109.47241 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.46654 * 240.00256 * 2 1 3 22 22 H 1.08992 * 109.46960 * 180.02562 * 3 2 1 23 23 H 1.09003 * 109.47121 * 300.00243 * 3 2 1 24 24 H 1.08998 * 109.47079 * 59.99811 * 3 2 1 25 25 H 1.00896 * 110.99807 * 278.95024 * 4 2 1 26 26 H 0.96998 * 120.00139 * 4.76074 * 10 9 7 27 27 H 1.08999 * 115.55128 * 29.40758 * 15 5 4 28 28 H 1.09005 * 117.49531 * 359.97438 * 16 15 5 29 29 H 1.08993 * 117.50323 * 145.02361 * 16 15 5 30 30 H 1.09004 * 117.49815 * 214.97933 * 17 15 5 31 31 H 1.09003 * 117.49780 * 359.97357 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.3670 -1.2355 0.9805 6 1 3.9310 -0.5599 0.3372 7 6 4.0735 -1.3750 2.3044 8 1 3.5169 -1.6547 3.1866 9 6 5.4304 -1.1458 2.3892 10 7 6.1241 -0.8943 1.3005 11 14 6.2822 -1.1849 4.0512 12 1 6.1055 -2.5248 4.6666 13 1 7.7305 -0.9101 3.8718 14 1 5.6877 -0.1513 4.9364 15 6 3.2616 -2.6074 0.3115 16 6 3.7754 -3.8169 1.0952 17 6 4.5647 -3.2915 -0.1066 18 1 -0.3633 0.5138 0.8900 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3634 -1.0277 0.0005 21 1 1.8933 -0.5138 -0.8900 22 1 3.1299 1.4425 -0.0005 23 1 1.6766 1.9564 -0.8900 24 1 1.6766 1.9563 0.8900 25 1 2.0021 -0.0816 2.0021 26 1 5.6715 -0.8017 0.4476 27 1 2.3893 -2.7541 -0.3254 28 1 4.1890 -3.6350 2.0872 29 1 3.2416 -4.7592 0.9735 30 1 4.5495 -3.8885 -1.0185 31 1 5.4971 -2.7639 0.0945 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259930682.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:46 Heat of formation + Delta-G solvation = -5.397905 kcal Electronic energy + Delta-G solvation = -11639.651190 eV Core-core repulsion = 9727.605343 eV Total energy + Delta-G solvation = -1912.045847 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.37343 -36.97127 -34.51517 -31.77851 -27.98776 -27.29339 -25.13696 -22.91703 -22.00814 -20.78587 -18.50597 -16.73574 -16.20095 -15.96267 -15.55477 -15.06113 -14.47642 -14.16827 -13.97645 -13.11873 -12.87420 -12.60066 -12.47828 -12.32056 -12.12976 -12.03843 -11.90602 -11.66049 -11.04581 -10.84560 -10.54168 -10.20922 -9.02187 -8.53211 -6.24181 1.54647 1.60327 1.79420 2.56906 3.17361 3.22760 3.63677 4.03722 4.22927 4.28276 4.40690 4.43519 4.54709 4.75106 4.87581 4.89615 4.91862 4.96765 5.01144 5.13786 5.26952 5.36539 5.47672 5.55418 5.65776 6.01595 6.13000 6.58421 6.69596 6.92094 7.54214 8.82692 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.037531 B = 0.014947 C = 0.012455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.871766 B = 1872.892075 C = 2247.629180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.070 3.930 3 C -0.169 4.169 4 N -0.681 5.681 5 C 0.225 3.775 6 H -0.015 1.015 7 C -0.589 4.589 8 H 0.046 0.954 9 C -0.020 4.020 10 N -0.933 5.933 11 Si 1.106 2.894 12 H -0.274 1.274 13 H -0.289 1.289 14 H -0.273 1.273 15 C -0.134 4.134 16 C -0.158 4.158 17 C -0.195 4.195 18 H 0.055 0.945 19 H 0.071 0.929 20 H 0.051 0.949 21 H 0.053 0.947 22 H 0.022 0.978 23 H 0.075 0.925 24 H 0.060 0.940 25 H 0.333 0.667 26 H 0.259 0.741 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.116 0.629 -1.425 7.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.040 4.040 3 C -0.228 4.228 4 N -0.311 5.311 5 C 0.116 3.884 6 H 0.002 0.998 7 C -0.628 4.628 8 H 0.064 0.936 9 C -0.219 4.219 10 N -0.571 5.571 11 Si 0.929 3.071 12 H -0.199 1.199 13 H -0.215 1.215 14 H -0.199 1.199 15 C -0.153 4.153 16 C -0.195 4.195 17 C -0.233 4.233 18 H 0.074 0.926 19 H 0.090 0.910 20 H 0.070 0.930 21 H 0.071 0.929 22 H 0.041 0.959 23 H 0.094 0.906 24 H 0.079 0.921 25 H 0.151 0.849 26 H 0.071 0.929 27 H 0.101 0.899 28 H 0.103 0.897 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.976 0.151 -0.854 6.039 hybrid contribution -0.661 0.712 -0.897 1.322 sum -6.638 0.863 -1.751 6.919 Atomic orbital electron populations 1.21667 0.92947 1.01750 1.01893 1.21655 0.96693 0.92198 0.93439 1.22385 0.99566 0.98148 1.02696 1.60710 1.26159 1.39267 1.05005 1.18712 0.85491 0.89867 0.94358 0.99771 1.22069 0.95771 1.50032 0.94914 0.93588 1.26947 0.95813 0.93017 1.06124 1.70931 1.38767 1.47567 0.99872 0.83056 0.74989 0.77626 0.71406 1.19943 1.21481 1.19876 1.22416 0.95248 0.95724 1.01956 1.22834 1.03553 0.96604 0.96532 1.22992 0.96688 1.04912 0.98711 0.92560 0.91026 0.92952 0.92880 0.95866 0.90638 0.92133 0.84945 0.92875 0.89945 0.89746 0.89065 0.88890 0.90144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.49 9.52 71.98 0.69 -2.81 16 2 C 0.07 2.50 3.01 44.92 0.14 2.64 16 3 C -0.17 -5.63 9.15 71.98 0.66 -4.98 16 4 N -0.68 -29.09 6.05 -473.31 -2.86 -31.96 16 5 C 0.22 11.15 2.09 44.17 0.09 11.24 16 6 H -0.02 -0.85 5.33 -2.38 -0.01 -0.86 16 7 C -0.59 -31.73 5.86 25.60 0.15 -31.58 16 8 H 0.05 2.52 7.82 -2.91 -0.02 2.50 16 9 C -0.02 -1.08 5.36 84.65 0.45 -0.62 16 10 N -0.93 -54.86 12.35 21.45 0.26 -54.60 16 11 Si 1.11 49.50 29.91 68.60 2.05 51.55 16 12 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 13 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 14 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 15 C -0.13 -6.19 5.69 -10.79 -0.06 -6.25 16 16 C -0.16 -7.05 9.68 30.62 0.30 -6.75 16 17 C -0.20 -8.84 10.05 30.62 0.31 -8.54 16 18 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 19 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 20 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 21 H 0.05 2.01 7.55 -2.39 -0.02 2.00 16 22 H 0.02 0.90 7.43 -2.39 -0.02 0.88 16 23 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 24 H 0.06 1.89 8.13 -2.39 -0.02 1.87 16 25 H 0.33 14.40 8.09 -89.70 -0.73 13.68 16 26 H 0.26 15.55 5.58 -92.71 -0.52 15.04 16 27 H 0.08 3.57 8.03 -2.39 -0.02 3.55 16 28 H 0.08 4.19 6.44 -2.38 -0.02 4.18 16 29 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16 30 H 0.09 3.61 8.14 -2.39 -0.02 3.59 16 31 H 0.08 4.18 5.68 -2.39 -0.01 4.17 16 Total: -1.00 -58.85 248.96 2.79 -56.06 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: 0.62 Total: 26.60 kcal Atomic # 6 Polarization: -50.37 SS G_CDS: 2.72 Total: -47.65 kcal Atomic # 7 Polarization: -83.96 SS G_CDS: -2.60 Total: -86.56 kcal Atomic # 14 Polarization: 49.50 SS G_CDS: 2.05 Total: 51.55 kcal Total: -58.85 2.79 -56.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259930682.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.659 kcal (2) G-P(sol) polarization free energy of solvation -58.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds